Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005094

Physical Location & Seq

Genomic Coordinates Reverse (-)

48143472 .. 48145186

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGTATGACTCCAAAACCAATAGCCCATGCGAAAATTACGAAACATGCCACTGAGACTCACATAACCCATTTCTCCCAAAATCAGAACGGTTCCAAAATTGAAACCATCCCAAAATCCAAATCCTCCCTAAATCAATCTAGGGCTGCAACGAAGGTAGGGGACGAAGCAGCTGGCAGATCGAGGCGGCGAAGCAACCGGCGAAGGGAGGCTGCGAATCCGGCGAAACAAGGCTGCCAAACCGGCGAGGAAGCGCGAGACCCAGGCGGAGAAGTGAAGCCTTTGACTGCCGAGGAATTGGAGCAGTACGAGTCCATTTCGGAGTCCTCCGACTCTGACTCCGATGACGGCCTCGAAGACGAGGAAGAGGACGGCGACGAAGACGAGGATGACGACGACGACGACAACGACGCGGATGATGAAGACGATGAGGATGAAGATGACGACGACGATGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGATGAGGACGACGAAGAAGACGAGGAAGAGGCTGAAGGAGGCGATGACGACGACGACGGCGAGGGAGATGACGACGACGACGAGGGCGAGGATGAGATTTACGTTTCTCAGGTTACCGGAGCTCTGAGAGCTGGGGCGGTGGAGTACCCCGAGCGACTGGGCCAGCCTGTGTGCCAGTACTATATGAGGACGGGGATGTCCAAATTTGGCGCCACTTGTAAGTATCACCATCCTAAGCAGGGAGGAGGCTCTGCGGCCCCTGTATCACTAAATTACTATGGATACCCATTACGACCGGATGGAGCTAATGAAAGCAATGCTAAAGTGAGCAAACGCGAGAAGGCCAGGCTAGTATACTACTGGGGGCCAATACACTACTGCGGATCAGTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0006082 GO:0006629 GO:0007275 GO:0007399 GO:0007417 GO:0008150 GO:0008152 GO:0008202 GO:0008206 GO:0008422 GO:0009056 GO:0009987 GO:0015926 GO:0016020 GO:0016021 GO:0016137 GO:0016139 GO:0016787 GO:0016798 GO:0019752 GO:0021953 GO:0021954 GO:0022008 GO:0030154 GO:0030182 GO:0031224 GO:0032501 GO:0032502 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044425 GO:0048468 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0071704 GO:1901135 GO:1901136 GO:1901360 GO:1901575 GO:1901615 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00511 ko00600 ko01100 map00511 map00600 map01100

Pfam Domains

Protein Families

DUF608 Glyco_hydr_116N

Protein Analysis

299

Amino Acids

32.79

Weight (kDa)

4.18

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24180 AT3G24180
fragaria_vesca	FvH4_4g00440 FvH4_4g00440 FvH4_4g00440 FvH4_4g00440 FvH4_4g00440
malus_domestica	MD04G1004800.v1.1
prunus_persica	Prupe.1G004700_v2.0.a1 Prupe.1G004700_v2.0.a1 Prupe.1G004700_v2.0.a1
pyrus_communis	pycom04g00480
rosa_chinensis	RchiOBHm_Chr4g0385861
rosa_laevigata	RLG00000010208
rosa_multiflora	Rmu_co8376727.1_g000001 Rmu_co8521537.1_g000001 Rmu_sc0004773.1_g000004 Rmu_sc0008728.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333460
rosa_rugosa	Rorug01G0169800 Rorug03G0301400 Rorug03G0301500 Rorug03G0301600 Rorug03G0301700 Rorug05G0362900
rosa_samantha	Rh4AG006800 Rh4BG004300 Rh4CG007300 Rh4DG006300
rosa_wichuraiana	Rw4G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	452, 700
AccB1I	GGYRCC	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	858
AccII	CGCG	3 cut(s)	256, 413, 840
AciI	CCGC	6 cut(s)	187, 267, 413, 641, 758, 885
AclWI	GGATC	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	707
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	5 cut(s)	308, 468, 650, 683, 894
AfiI	CCNNNNNNNGG	2 cut(s)	205, 743
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	3 cut(s)	262, 456, 848
AluBI	AGCT	4 cut(s)	173, 626, 635, 809
AluI	AGCT	4 cut(s)	173, 626, 635, 809
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	50, 252
AlwI	GGATC	1 cut(s)	895
Ama87I	CYCGRG	1 cut(s)	653
AoxI	GGCC	6 cut(s)	349, 481, 664, 759, 846, 869
ApeKI	GCWGC	4 cut(s)	146, 170, 212, 234
ApoI	RAATTY	1 cut(s)	707
AspLEI	GCGC	2 cut(s)	256, 716
AspS9I	GGNCC	4 cut(s)	482, 664, 760, 869
AsuHPI	GGTGA	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	653
BanI	GGYRCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	628
BbsI	GAAGAC	4 cut(s)	363, 387, 429, 528
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	4 cut(s)	133, 182, 199, 221
BccI	CCATC	3 cut(s)	116, 741, 797
BceAI	ACGGC	3 cut(s)	364, 388, 577
BciT130I	CCWGG	3 cut(s)	264, 458, 850
BciVI	GTATCC	1 cut(s)	779
BcoDI	GTCTC	2 cut(s)	50, 252
BfaI	CTAG	2 cut(s)	141, 854
BfoI	RGCGCY	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	779
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	6 cut(s)	147, 171, 188, 213, 235, 759
BlsI	GCNGC	6 cut(s)	148, 172, 189, 214, 236, 760
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	3 cut(s)	264, 458, 850
BmeT110I	CYCGRG	1 cut(s)	653
BmgT120I	GGNCC	4 cut(s)	482, 664, 760, 869
BmiI	GGNNCC	4 cut(s)	94, 715, 762, 870
BmrFI	CCNGG	3 cut(s)	264, 458, 850
BmrI	ACTGGG	2 cut(s)	671, 874
BmuI	ACTGGG	2 cut(s)	671, 874
BpiI	GAAGAC	4 cut(s)	363, 387, 429, 528
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	262, 291
BsaWI	WCCGGW	4 cut(s)	476, 487, 620, 799
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 743
Bse118I	RCCGGY	2 cut(s)	198, 242
Bse1I	ACTGG	3 cut(s)	666, 679, 869
Bse3DI	GCAATG	1 cut(s)	826
BseBI	CCWGG	3 cut(s)	264, 458, 850
BseDI	CCNNGG	2 cut(s)	262, 291
BseGI	GGATG	8 cut(s)	108, 394, 421, 439, 601, 705, 733, 808
BseLI	CCNNNNNNNGG	2 cut(s)	205, 743
BseMI	GCAATG	1 cut(s)	826
BseMII	CTCAG	3 cut(s)	45, 620, 626
BseNI	ACTGG	3 cut(s)	666, 679, 869
BseRI	GAGGAG	1 cut(s)	762
BseXI	GCAGC	4 cut(s)	133, 182, 199, 221
BseYI	CCCAGC	1 cut(s)	635
Bsh1236I	CGCG	3 cut(s)	256, 413, 840
Bsh1285I	CGRYCG	1 cut(s)	800
BshFI	GGCC	6 cut(s)	351, 483, 666, 761, 848, 871
BshNI	GGYRCC	1 cut(s)	713
BsiEI	CGRYCG	1 cut(s)	800
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	653
BsiSI	CCGG	7 cut(s)	199, 221, 243, 477, 488, 621, 800
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	205, 743
BsmAI	GTCTC	2 cut(s)	50, 252
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	6 cut(s)	351, 483, 666, 761, 848, 871
Bso31I	GGTCTC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	653
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	2 cut(s)	179, 887
BspACI	CCGC	6 cut(s)	187, 267, 413, 641, 758, 885
BspANI	GGCC	6 cut(s)	351, 483, 666, 761, 848, 871
BspCNI	CTCAG	3 cut(s)	46, 621, 625
BspFNI	CGCG	3 cut(s)	256, 413, 840
BspLI	GGNNCC	4 cut(s)	94, 715, 762, 870
BspPI	GGATC	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	826
BsrFI	RCCGGY	2 cut(s)	198, 242
BsrI	ACTGG	3 cut(s)	666, 679, 869
BssAI	RCCGGY	2 cut(s)	198, 242
BssECI	CCNNGG	2 cut(s)	262, 291
BssMI	GATC	2 cut(s)	179, 887
BssNAI	GTATAC	1 cut(s)	859
BssNI	GRCGYC	1 cut(s)	714
Bst1107I	GTATAC	1 cut(s)	859
Bst2UI	CCWGG	3 cut(s)	264, 458, 850
Bst4CI	ACNGT	2 cut(s)	92, 471
Bst6I	CTCTTC	2 cut(s)	360, 525
BstACI	GRCGYC	1 cut(s)	714
BstC8I	GCNNGC	2 cut(s)	175, 668
BstDEI	CTNAG	4 cut(s)	54, 612, 629, 738
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	8 cut(s)	108, 394, 421, 439, 601, 705, 733, 808
BstFNI	CGCG	3 cut(s)	256, 413, 840
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	2 cut(s)	256, 716
BstKTI	GATC	2 cut(s)	182, 890
BstMAI	GTCTC	2 cut(s)	50, 252
BstMBI	GATC	2 cut(s)	179, 887
BstMCI	CGRYCG	1 cut(s)	800
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 243, 632
BstNI	CCWGG	3 cut(s)	264, 458, 850
BstNSI	RCATGY	1 cut(s)	50
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	3 cut(s)	262, 456, 848
BstUI	CGCG	3 cut(s)	256, 413, 840
BstV1I	GCAGC	4 cut(s)	133, 182, 199, 221
BstV2I	GAAGAC	4 cut(s)	363, 387, 429, 528
BstZ17I	GTATAC	1 cut(s)	859
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	6 cut(s)	351, 483, 666, 761, 848, 871
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	8 cut(s)	108, 394, 421, 439, 601, 705, 733, 808
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	175, 668
CfoI	GCGC	2 cut(s)	256, 716
Cfr10I	RCCGGY	2 cut(s)	198, 242
Cfr13I	GGNCC	4 cut(s)	482, 664, 760, 869
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	5 cut(s)	307, 467, 649, 682, 893
CviAII	CATG	2 cut(s)	29, 47
CviQI	GTAC	5 cut(s)	307, 467, 649, 682, 893
DdeI	CTNAG	4 cut(s)	54, 612, 629, 738
DinI	GGCGCC	1 cut(s)	715
DpnI	GATC	2 cut(s)	181, 889
DpnII	GATC	2 cut(s)	179, 887
DrdI	GACNNNNNNGTC	2 cut(s)	452, 700
DseDI	GACNNNNNNGTC	2 cut(s)	452, 700
Eam1104I	CTCTTC	2 cut(s)	360, 525
EarI	CTCTTC	2 cut(s)	360, 525
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	626
Eco24I	GRGCYC	1 cut(s)	628
Eco31I	GGTCTC	1 cut(s)	252
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	653
Eco91I	GGTNACC	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	3 cut(s)	262, 456, 848
EcoT38I	GRGCYC	1 cut(s)	628
EgeI	GGCGCC	1 cut(s)	715
EheI	GGCGCC	1 cut(s)	715
FaeI	CATG	2 cut(s)	32, 50
FaiI	YATR	8 cut(s)	8, 30, 48, 65, 687, 689, 783, 859
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	28, 46
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	6 cut(s)	147, 171, 188, 213, 235, 759
FokI	GGATG	8 cut(s)	95, 401, 428, 446, 608, 712, 720, 815
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	6 cut(s)	147, 171, 188, 213, 235, 759
FspBI	CTAG	2 cut(s)	141, 854
GlaI	GCGC	2 cut(s)	255, 715
GluI	GCNGC	6 cut(s)	147, 171, 188, 213, 235, 759
GsaI	CCCAGC	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	6 cut(s)	351, 483, 666, 761, 848, 871
HapII	CCGG	7 cut(s)	199, 221, 243, 477, 488, 621, 800
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	2 cut(s)	256, 716
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	2 cut(s)	32, 50
Hin6I	GCGC	2 cut(s)	254, 714
HinP1I	GCGC	2 cut(s)	254, 714
HinfI	GANTC	7 cut(s)	10, 58, 217, 311, 323, 332, 338
HpaII	CCGG	7 cut(s)	199, 221, 243, 477, 488, 621, 800
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	2 cut(s)	859, 895
Hpy188I	TCNGA	6 cut(s)	87, 322, 331, 337, 343, 630
Hpy8I	GTNNAC	2 cut(s)	859, 895
HpyAV	CCTTC	4 cut(s)	148, 198, 533, 838
HpyCH4III	ACNGT	2 cut(s)	92, 471
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 243, 632
HpyF3I	CTNAG	4 cut(s)	54, 612, 629, 738
HpySE526I	ACGT	1 cut(s)	606
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	2 cut(s)	32, 50
HspAI	GCGC	2 cut(s)	254, 714
KasI	GGCGCC	1 cut(s)	713
Kzo9I	GATC	2 cut(s)	179, 887
LmnI	GCTCC	3 cut(s)	301, 623, 806
Lsp1109I	GCAGC	4 cut(s)	133, 182, 199, 221
MaeI	CTAG	2 cut(s)	141, 854
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	2 cut(s)	181, 889
MboI	GATC	2 cut(s)	179, 887
MboII	GAAGA	8 cut(s)	368, 377, 392, 434, 449, 530, 533, 542
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	5 cut(s)	36, 99, 296, 707, 775
Mly113I	GGCGCC	1 cut(s)	714
MlyI	GAGTC	6 cut(s)	4, 52, 320, 326, 332, 332
MmeI	TCCRAC	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	7 cut(s)	199, 221, 243, 477, 488, 621, 800
MspR9I	CCNGG	3 cut(s)	264, 458, 850
MvaI	CCWGG	3 cut(s)	264, 458, 850
MvnI	CGCG	3 cut(s)	256, 413, 840
MwoI	GCNNNNNNNGC	3 cut(s)	221, 243, 632
NarI	GGCGCC	1 cut(s)	714
NdeII	GATC	2 cut(s)	179, 887
NlaIII	CATG	2 cut(s)	32, 50
NlaIV	GGNNCC	4 cut(s)	94, 715, 762, 870
NmeAIII	GCCGAG	1 cut(s)	316
NspI	RCATGY	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	8 cut(s)	390, 399, 405, 510, 522, 561, 582, 588
PfeI	GAWTC	1 cut(s)	217
PflFI	GACNNNGTC	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	148, 172, 189, 214, 236, 760
PleI	GAGTC	6 cut(s)	4, 52, 319, 326, 331, 332
PluTI	GGCGCC	1 cut(s)	717
PpsI	GAGTC	6 cut(s)	4, 52, 319, 326, 331, 332
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	3 cut(s)	262, 456, 848
PspEI	GGTNACC	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	3 cut(s)	262, 456, 848
PspN4I	GGNNCC	4 cut(s)	94, 715, 762, 870
PspPI	GGNCC	4 cut(s)	482, 664, 760, 869
PsyI	GACNNNGTC	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	5 cut(s)	308, 468, 650, 683, 894
RsaNI	GTAC	5 cut(s)	307, 467, 649, 682, 893
SacI	GAGCTC	1 cut(s)	628
SatI	GCNGC	6 cut(s)	147, 171, 188, 213, 235, 759
Sau3AI	GATC	2 cut(s)	179, 887
Sau96I	GGNCC	4 cut(s)	482, 664, 760, 869
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	6 cut(s)	4, 52, 320, 326, 332, 332
ScrFI	CCNGG	3 cut(s)	264, 458, 850
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	8 cut(s)	159, 175, 465, 609, 618, 628, 637, 811
SfoI	GGCGCC	1 cut(s)	715
Sse9I	AATT	5 cut(s)	36, 99, 296, 707, 775
SsiI	CCGC	6 cut(s)	187, 267, 413, 641, 758, 885
SspDI	GGCGCC	1 cut(s)	713
SspMI	CTAG	2 cut(s)	141, 854
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	3 cut(s)	262, 456, 848
TaaI	ACNGT	2 cut(s)	92, 471
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	2 cut(s)	182, 354
TasI	AATT	5 cut(s)	36, 99, 296, 707, 775
TatI	WGTACW	2 cut(s)	681, 892
TauI	GCSGC	2 cut(s)	190, 761
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	4 cut(s)	146, 170, 212, 234
TspDTI	ATGAA	3 cut(s)	435, 450, 828
TspRI	CASTG	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	707
XceI	RCATGY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	858
XspI	CTAG	2 cut(s)	141, 854
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.