Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8381305.1

Orthogroup ID

OG0014592

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1157

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8381305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1156 bp

atgccaggtcagtggcgggaaccggtttgttcaaatgcgttgatgaatgggtatttgaaggcgggaagaatcgaagaggcggttagagttttcgagggaatgtcagagagaaatgtggtttctgagagttgcatggttgatgggtattgcaaactgggaaggattgatgatgctagaaatttgtttgatgtgatgctggagaggactgtggttacttggacggcaatgattgatgggtacatgaagaagggaatgttcgaaaggggttttgaattgttttcggatatgagaagggaggggatagtggaggtcaattccactaccatgagcataatgtttgacgcttgtggtgcttttgctagatgtggagaagggattcagatgcacgggttagtttcccgaatgggatttgattatgatgtctttttaggaaattctattatcattatgtattgtaggtttggttttgtagatgaagctactaagataatacgtatgatgagcaagacaaatatagtttcctggaattccttaatcgcaggttatgttcaatgtgccgaagttgaagtagcttttaaactgtttgagatgatgcctgaaaaggatgtagtttcatggacgaccatgatatcaggattctcaagcaagggcatgactaggaaagccatccaattgtttttgttgatgcctgagaaggatgatgttgcttggactgctctagtttcaggttttgtaaataatgaggaatatgaggaggctctccattggtttatcaagatgcttcggaaaacaaccaggcctaatccacttactttgagcagtgtgctcagtgcttcagccagtttggccgctctaaatgaggggatgcagatccattctttttcactgaaggtgaatatggaaaataatttatctgttcgaaatgctctggtctcaatgtattcgaagtgtgggaatgtcattgatgccaatcggatcttcacaagtatcttttcacccaatactgtttcattcaactccatgattactgggtttgcccaaaatggttttggggaagaagccctgaacttgttttggagcatgcagaatgtaggttgcgagccaaaccaaatcacatttctgggtgttctttcagcttgtgtccatgtgggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

385

Amino Acids

43.12

Weight (kDa)

5.34

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53600 AT1G53600
fragaria_vesca	FvH4_3g16920
malus_domestica	MD03G1255800.v1.1
prunus_persica	Prupe.4G151400_v2.0.a1
pyrus_communis	pycom03g20240
rosa_chinensis	RchiOBHm_Chr5g0028141
rosa_laevigata	RLG00000033071
rosa_multiflora	Rmu_co8381305.1_g000001 Rmu_sc0002598.1_g000012
rosa_roxburghii	Rroxscaffold_1G00051540
rosa_rugosa	Rorug05G0104400
rosa_samantha	Rh5AG197600 Rh5BG196200 Rh5CG216200 Rh5DG197900
rosa_wichuraiana	Rw5G018060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
AccBSI	CCGCTC	1 cut(s)	851
AciI	CCGC	4 cut(s)	16, 62, 80, 849
AclWI	GGATC	2 cut(s)	865, 983
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	3 cut(s)	178, 433, 526
AcuI	CTGAAG	2 cut(s)	819, 908
AfaI	GTAC	1 cut(s)	239
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	6 cut(s)	33, 58, 272, 551, 566, 1015
AjnI	CCWGG	3 cut(s)	4, 521, 794
AjuI	GAANNNNNNNTTGG	4 cut(s)	962, 994, 1101, 1133
AluBI	AGCT	3 cut(s)	479, 572, 1136
AluI	AGCT	3 cut(s)	479, 572, 1136
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	1 cut(s)	937
AlwI	GGATC	2 cut(s)	865, 983
AoxI	GGCC	2 cut(s)	797, 846
ApoI	RAATTY	3 cut(s)	178, 433, 526
AsiGI	ACCGGT	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	375
AsuHPI	GGTGA	2 cut(s)	904, 987
AsuII	TTCGAA	3 cut(s)	258, 919, 944
Bbv12I	GWGCWC	1 cut(s)	828
BccI	CCATC	3 cut(s)	134, 227, 674
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	3 cut(s)	6, 523, 796
BcoDI	GTCTC	1 cut(s)	937
BfaI	CTAG	5 cut(s)	174, 360, 657, 719, 1154
BfuAI	ACCTGC	1 cut(s)	530
BglI	GCCNNNNNGGC	1 cut(s)	845
BisI	GCNGC	1 cut(s)	849
BlsI	GCNGC	1 cut(s)	850
Bme1390I	CCNGG	3 cut(s)	6, 523, 796
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	3 cut(s)	6, 523, 796
BmrI	ACTGGG	2 cut(s)	164, 1038
BmsI	GCATC	8 cut(s)	160, 183, 372, 582, 675, 768, 855, 955
BmuI	ACTGGG	2 cut(s)	164, 1038
BpmI	CTGGAG	1 cut(s)	218
Bpu14I	TTCGAA	3 cut(s)	258, 919, 944
BpuEI	CTTGAG	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	494
BsaBI	GATNNNNATC	2 cut(s)	869, 969
BsaI	GGTCTC	1 cut(s)	937
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	159, 840, 1033
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	2 cut(s)	869, 969
BseBI	CCWGG	3 cut(s)	6, 523, 796
BseGI	GGATG	4 cut(s)	610, 666, 703, 870
BseJI	GATNNNNATC	2 cut(s)	869, 969
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	114, 681, 841
BseNI	ACTGG	3 cut(s)	159, 840, 1033
BseRI	GAGGAG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	799, 848
BshTI	ACCGGT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	937
BsnI	GGCC	2 cut(s)	799, 848
Bso31I	GGTCTC	1 cut(s)	937
Bsp119I	TTCGAA	3 cut(s)	258, 919, 944
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	2 cut(s)	870, 975
BspACI	CCGC	4 cut(s)	16, 62, 80, 849
BspANI	GGCC	2 cut(s)	799, 848
BspCNI	CTCAG	3 cut(s)	115, 682, 840
BspLI	GGNNCC	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	865, 983
BspT104I	TTCGAA	3 cut(s)	258, 919, 944
BspTNI	GGTCTC	1 cut(s)	937
BsrBI	CCGCTC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	159, 840, 1033
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	2 cut(s)	870, 975
Bst2UI	CCWGG	3 cut(s)	6, 523, 796
Bst4CI	ACNGT	3 cut(s)	208, 582, 1006
Bst6I	CTCTTC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	494
BstBI	TTCGAA	3 cut(s)	258, 919, 944
BstC8I	GCNNGC	2 cut(s)	1082, 1100
BstDEI	CTNAG	4 cut(s)	123, 483, 690, 827
BstF5I	GGATG	4 cut(s)	610, 666, 703, 870
BstKTI	GATC	2 cut(s)	873, 978
BstMAI	GTCTC	1 cut(s)	937
BstMBI	GATC	2 cut(s)	870, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 713, 845
BstNI	CCWGG	3 cut(s)	6, 523, 796
BstNSI	RCATGY	1 cut(s)	1084
BstSCI	CCNGG	3 cut(s)	4, 521, 794
BstSNI	TACGTA	1 cut(s)	494
BstX2I	RGATCY	2 cut(s)	870, 975
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstYI	RGATCY	2 cut(s)	870, 975
BsuRI	GGCC	2 cut(s)	799, 848
BtsCI	GGATG	4 cut(s)	610, 666, 703, 870
BtsI	GCAGTG	1 cut(s)	826
BtsIMutI	CAGTG	4 cut(s)	17, 826, 835, 884
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	1082, 1100
Cfr10I	RCCGGY	1 cut(s)	22
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	238
CspAI	ACCGGT	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	9 cut(s)	133, 241, 325, 615, 625, 652, 1021, 1081, 1145
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	4 cut(s)	123, 483, 690, 827
DpnI	GATC	2 cut(s)	872, 977
DpnII	GATC	2 cut(s)	870, 975
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	846
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco105I	TACGTA	1 cut(s)	494
Eco147I	AGGCCT	1 cut(s)	799
Eco31I	GGTCTC	1 cut(s)	937
Eco32I	GATATC	1 cut(s)	630
Eco57I	CTGAAG	2 cut(s)	819, 908
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	4, 521, 794
EcoRV	GATATC	1 cut(s)	630
FaeI	CATG	9 cut(s)	136, 244, 328, 618, 628, 655, 1024, 1084, 1148
FatI	CATG	9 cut(s)	132, 240, 324, 614, 624, 651, 1020, 1080, 1144
FauI	CCCGC	2 cut(s)	9, 55
Fnu4HI	GCNGC	1 cut(s)	849
FokI	GGATG	4 cut(s)	617, 653, 710, 877
Fsp4HI	GCNGC	1 cut(s)	849
FspBI	CTAG	5 cut(s)	174, 360, 657, 719, 1154
GluI	GCNGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	799, 848
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	9 cut(s)	136, 244, 328, 618, 628, 655, 1024, 1084, 1148
HinfI	GANTC	3 cut(s)	69, 376, 636
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	904, 987
Hpy188I	TCNGA	6 cut(s)	106, 124, 283, 381, 786, 975
Hpy188III	TCNNGA	3 cut(s)	399, 633, 775
HpyAV	CCTTC	7 cut(s)	52, 153, 241, 285, 365, 688, 883
HpyCH4III	ACNGT	3 cut(s)	208, 582, 1006
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	5 cut(s)	132, 150, 385, 868, 1084
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 713, 845
HpyF3I	CTNAG	4 cut(s)	123, 483, 690, 827
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	9 cut(s)	136, 244, 328, 618, 628, 655, 1024, 1084, 1148
Kzo9I	GATC	2 cut(s)	870, 975
LmnI	GCTCC	1 cut(s)	1077
LweI	GCATC	8 cut(s)	160, 183, 372, 582, 675, 768, 855, 955
MaeI	CTAG	5 cut(s)	174, 360, 657, 719, 1154
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	872, 977
MbiI	CCGCTC	1 cut(s)	851
MboI	GATC	2 cut(s)	870, 975
MboII	GAAGA	5 cut(s)	78, 86, 256, 970, 1067
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	2 cut(s)	870, 975
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	7 cut(s)	178, 272, 313, 433, 526, 671, 907
MnlI	CCTC	9 cut(s)	70, 88, 195, 289, 301, 736, 745, 748, 853
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	2 cut(s)	533, 576
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	3 cut(s)	6, 523, 796
MunI	CAATTG	1 cut(s)	671
MvaI	CCWGG	3 cut(s)	6, 523, 796
MwoI	GCNNNNNNNGC	3 cut(s)	350, 713, 845
NdeII	GATC	2 cut(s)	870, 975
NlaIII	CATG	9 cut(s)	136, 244, 328, 618, 628, 655, 1024, 1084, 1148
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	1084
NspV	TTCGAA	3 cut(s)	258, 919, 944
PaeI	GCATGC	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	69, 376, 636
PfoI	TCCNGGA	1 cut(s)	521
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	850
Ppu21I	YACGTR	1 cut(s)	494
Psp6I	CCWGG	3 cut(s)	4, 521, 794
PspGI	CCWGG	3 cut(s)	4, 521, 794
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	870, 975
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	533, 576
SatI	GCNGC	1 cut(s)	849
Sau3AI	GATC	2 cut(s)	870, 975
ScrFI	CCNGG	3 cut(s)	6, 523, 796
SduI	GDGCHC	1 cut(s)	828
SfaNI	GCATC	8 cut(s)	160, 183, 372, 582, 675, 768, 855, 955
SfuI	TTCGAA	3 cut(s)	258, 919, 944
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SnaBI	TACGTA	1 cut(s)	494
SphI	GCATGC	1 cut(s)	1084
Sse9I	AATT	7 cut(s)	178, 272, 313, 433, 526, 671, 907
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	4 cut(s)	16, 62, 80, 849
SspMI	CTAG	5 cut(s)	174, 360, 657, 719, 1154
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	3 cut(s)	4, 521, 794
TaaI	ACNGT	3 cut(s)	208, 582, 1006
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	5 cut(s)	72, 93, 258, 919, 944
TasI	AATT	7 cut(s)	178, 272, 313, 433, 526, 671, 907
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	3 cut(s)	69, 376, 636
Tru1I	TTAA	2 cut(s)	533, 576
Tru9I	TTAA	2 cut(s)	533, 576
TscAI	CASTG	4 cut(s)	17, 826, 835, 891
TspDTI	ATGAA	5 cut(s)	59, 257, 489, 603, 999
TspRI	CASTG	4 cut(s)	17, 826, 835, 891
XapI	RAATTY	3 cut(s)	178, 433, 526
XceI	RCATGY	1 cut(s)	1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	5 cut(s)	174, 360, 657, 719, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.