Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G53600 AT1G53600 |
| fragaria_vesca | FvH4_3g16920 |
| malus_domestica | MD03G1255800.v1.1 |
| prunus_persica | Prupe.4G151400_v2.0.a1 |
| pyrus_communis | pycom03g20240 |
| rosa_chinensis | RchiOBHm_Chr5g0028141 |
| rosa_laevigata | RLG00000033071 |
| rosa_multiflora | Rmu_co8381305.1_g000001 Rmu_sc0002598.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00051540 |
| rosa_rugosa | Rorug05G0104400 |
| rosa_samantha | Rh5AG197600 Rh5BG196200 Rh5CG216200 Rh5DG197900 |
| rosa_wichuraiana | Rw5G018060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 72 |
| Acc36I | ACCTGC | 1 cut(s) | 1031 |
| AccBSI | CCGCTC | 1 cut(s) | 1352 |
| AccI | GTMKAC | 1 cut(s) | 95 |
| AciI | CCGC | 4 cut(s) | 517, 563, 581, 1350 |
| AclWI | GGATC | 5 cut(s) | 1366, 1484, 1728, 2126, 2158 |
| AcoI | YGGCCR | 2 cut(s) | 277, 1347 |
| AcsI | RAATTY | 4 cut(s) | 679, 934, 1027, 1996 |
| AcuI | CTGAAG | 2 cut(s) | 1320, 1409 |
| AfaI | GTAC | 2 cut(s) | 406, 740 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1814, 1815, 1816, 1927 |
| AgeI | ACCGGT | 1 cut(s) | 523 |
| AhlI | ACTAGT | 1 cut(s) | 1654 |
| AjnI | CCWGG | 7 cut(s) | 242, 412, 505, 1022, 1295, 1711, 2020 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1463, 1495, 1602, 1634 |
| Alw21I | GWGCWC | 2 cut(s) | 1329, 1831 |
| Alw26I | GTCTC | 1 cut(s) | 1438 |
| AlwI | GGATC | 5 cut(s) | 1366, 1484, 1728, 2126, 2158 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1891 |
| AoxI | GGCC | 3 cut(s) | 277, 1298, 1347 |
| ApeKI | GCWGC | 4 cut(s) | 81, 135, 2025, 2028 |
| ApoI | RAATTY | 4 cut(s) | 679, 934, 1027, 1996 |
| AsiGI | ACCGGT | 1 cut(s) | 523 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 876 |
| AsuHPI | GGTGA | 5 cut(s) | 197, 232, 1405, 1488, 2174 |
| AsuII | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| AsuNHI | GCTAGC | 3 cut(s) | 131, 1841, 2143 |
| BalI | TGGCCA | 1 cut(s) | 279 |
| BanII | GRGCYC | 3 cut(s) | 1809, 1831, 1852 |
| Bbv12I | GWGCWC | 2 cut(s) | 1329, 1831 |
| BbvI | GCAGC | 4 cut(s) | 68, 147, 2012, 2040 |
| BccI | CCATC | 5 cut(s) | 635, 728, 1175, 1964, 2091 |
| BceAI | ACGGC | 3 cut(s) | 738, 1685, 1783 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 286, 320 |
| BciT130I | CCWGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| BclI | TGATCA | 4 cut(s) | 348, 444, 1893, 2164 |
| BcoDI | GTCTC | 1 cut(s) | 1438 |
| BcuI | ACTAGT | 1 cut(s) | 1654 |
| BfmI | CTRYAG | 2 cut(s) | 55, 2026 |
| BfuAI | ACCTGC | 1 cut(s) | 1031 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1346 |
| BisI | GCNGC | 5 cut(s) | 82, 136, 1350, 2026, 2029 |
| BlsI | GCNGC | 5 cut(s) | 83, 137, 1351, 2027, 2030 |
| Bme1390I | CCNGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| BmiI | GGNNCC | 2 cut(s) | 522, 1905 |
| BmrFI | CCNGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| BmrI | ACTGGG | 2 cut(s) | 665, 1539 |
| BmtI | GCTAGC | 3 cut(s) | 135, 1845, 2147 |
| BmuI | ACTGGG | 2 cut(s) | 665, 1539 |
| BpmI | CTGGAG | 1 cut(s) | 719 |
| Bpu14I | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| BpuEI | CTTGAG | 2 cut(s) | 84, 1126 |
| BsaAI | YACGTR | 1 cut(s) | 995 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1370, 1470 |
| BsaI | GGTCTC | 1 cut(s) | 1438 |
| BsaJI | CCNNGG | 2 cut(s) | 413, 1747 |
| BsaWI | WCCGGW | 1 cut(s) | 523 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 140, 170, 358, 388, 1965, 1995 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1814, 1815, 1816, 1927 |
| Bse118I | RCCGGY | 1 cut(s) | 523 |
| Bse1I | ACTGG | 5 cut(s) | 454, 660, 1341, 1534, 1722 |
| Bse3DI | GCAATG | 2 cut(s) | 732, 1694 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1370, 1470 |
| BseBI | CCWGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| BseDI | CCNNGG | 2 cut(s) | 413, 1747 |
| BseGI | GGATG | 8 cut(s) | 45, 474, 1111, 1167, 1204, 1371, 1975, 1992 |
| BseJI | GATNNNNATC | 2 cut(s) | 1370, 1470 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1814, 1815, 1816, 1927 |
| BseMI | GCAATG | 2 cut(s) | 732, 1694 |
| BseMII | CTCAG | 5 cut(s) | 474, 615, 1182, 1342, 1898 |
| BseNI | ACTGG | 5 cut(s) | 454, 660, 1341, 1534, 1722 |
| BseRI | GAGGAG | 1 cut(s) | 1268 |
| BseXI | GCAGC | 4 cut(s) | 68, 147, 2012, 2040 |
| BseYI | CCCAGC | 2 cut(s) | 1814, 2031 |
| BshFI | GGCC | 3 cut(s) | 279, 1300, 1349 |
| BshTI | ACCGGT | 1 cut(s) | 523 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1329, 1831 |
| BsiSI | CCGG | 1 cut(s) | 524 |
| BslFI | GGGAC | 1 cut(s) | 1665 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1814, 1815, 1816, 1927 |
| BsmAI | GTCTC | 1 cut(s) | 1438 |
| BsmFI | GGGAC | 1 cut(s) | 1665 |
| BsnI | GGCC | 3 cut(s) | 279, 1300, 1349 |
| Bso31I | GGTCTC | 1 cut(s) | 1438 |
| Bsp119I | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1329, 1809, 1831, 1852 |
| BspACI | CCGC | 4 cut(s) | 517, 563, 581, 1350 |
| BspANI | GGCC | 3 cut(s) | 279, 1300, 1349 |
| BspCNI | CTCAG | 5 cut(s) | 475, 616, 1183, 1341, 1897 |
| BspLI | GGNNCC | 2 cut(s) | 522, 1905 |
| BspMAI | CTGCAG | 1 cut(s) | 2030 |
| BspMI | ACCTGC | 1 cut(s) | 1031 |
| BspOI | GCTAGC | 3 cut(s) | 135, 1845, 2147 |
| BspPI | GGATC | 5 cut(s) | 1366, 1484, 1728, 2126, 2158 |
| BspQI | GCTCTTC | 1 cut(s) | 1836 |
| BspT104I | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| BspTNI | GGTCTC | 1 cut(s) | 1438 |
| BsrBI | CCGCTC | 1 cut(s) | 1352 |
| BsrDI | GCAATG | 2 cut(s) | 732, 1694 |
| BsrFI | RCCGGY | 1 cut(s) | 523 |
| BsrI | ACTGG | 5 cut(s) | 454, 660, 1341, 1534, 1722 |
| BssAI | RCCGGY | 1 cut(s) | 523 |
| BssECI | CCNNGG | 2 cut(s) | 413, 1747 |
| BssT1I | CCWWGG | 1 cut(s) | 1747 |
| Bst2UI | CCWGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| Bst4CI | ACNGT | 4 cut(s) | 497, 709, 1083, 1507 |
| Bst6I | CTCTTC | 3 cut(s) | 570, 1836, 2009 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1696, 1877 |
| BstBAI | YACGTR | 1 cut(s) | 995 |
| BstBI | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| BstDEI | CTNAG | 7 cut(s) | 228, 483, 624, 984, 1191, 1328, 1884 |
| BstF5I | GGATG | 8 cut(s) | 45, 474, 1111, 1167, 1204, 1371, 1975, 1992 |
| BstMAI | GTCTC | 1 cut(s) | 1438 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 285, 294, 851, 1214, 1346, 1696, 1804, 1847, 1877 |
| BstNI | CCWGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| BstNSI | RCATGY | 1 cut(s) | 1585 |
| BstSCI | CCNGG | 7 cut(s) | 242, 412, 505, 1022, 1295, 1711, 2020 |
| BstSFI | CTRYAG | 2 cut(s) | 55, 2026 |
| BstSNI | TACGTA | 1 cut(s) | 995 |
| BstV1I | GCAGC | 4 cut(s) | 68, 147, 2012, 2040 |
| BstX2I | RGATCY | 2 cut(s) | 1371, 1476 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 513 |
| BstYI | RGATCY | 2 cut(s) | 1371, 1476 |
| BsuRI | GGCC | 3 cut(s) | 279, 1300, 1349 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtsCI | GGATG | 8 cut(s) | 45, 474, 1111, 1167, 1204, 1371, 1975, 1992 |
| BtsI | GCAGTG | 1 cut(s) | 1327 |
| BtsIMutI | CAGTG | 5 cut(s) | 447, 518, 1327, 1336, 1385 |
| BveI | ACCTGC | 1 cut(s) | 1031 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1891 |
| Cfr10I | RCCGGY | 1 cut(s) | 523 |
| CseI | GACGC | 1 cut(s) | 851 |
| Csp6I | GTAC | 2 cut(s) | 405, 739 |
| CspAI | ACCGGT | 1 cut(s) | 523 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1296, 1331 |
| CviQI | GTAC | 2 cut(s) | 405, 739 |
| DdeI | CTNAG | 7 cut(s) | 228, 483, 624, 984, 1191, 1328, 1884 |
| DraI | TTTAAA | 1 cut(s) | 1078 |
| EaeI | YGGCCR | 2 cut(s) | 277, 1347 |
| Eam1104I | CTCTTC | 3 cut(s) | 570, 1836, 2009 |
| EarI | CTCTTC | 3 cut(s) | 570, 1836, 2009 |
| Ecl136II | GAGCTC | 1 cut(s) | 1829 |
| Eco105I | TACGTA | 1 cut(s) | 995 |
| Eco130I | CCWWGG | 1 cut(s) | 1747 |
| Eco147I | AGGCCT | 1 cut(s) | 1300 |
| Eco24I | GRGCYC | 3 cut(s) | 1809, 1831, 1852 |
| Eco31I | GGTCTC | 1 cut(s) | 1438 |
| Eco32I | GATATC | 1 cut(s) | 1131 |
| Eco53kI | GAGCTC | 1 cut(s) | 1829 |
| Eco57I | CTGAAG | 2 cut(s) | 1320, 1409 |
| EcoICRI | GAGCTC | 1 cut(s) | 1829 |
| EcoRI | GAATTC | 2 cut(s) | 1027, 1996 |
| EcoRII | CCWGG | 7 cut(s) | 242, 412, 505, 1022, 1295, 1711, 2020 |
| EcoRV | GATATC | 1 cut(s) | 1131 |
| EcoT14I | CCWWGG | 1 cut(s) | 1747 |
| EcoT38I | GRGCYC | 3 cut(s) | 1809, 1831, 1852 |
| ErhI | CCWWGG | 1 cut(s) | 1747 |
| FaqI | GGGAC | 1 cut(s) | 1665 |
| FauI | CCCGC | 2 cut(s) | 510, 556 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| FbaI | TGATCA | 4 cut(s) | 348, 444, 1893, 2164 |
| FblI | GTMKAC | 1 cut(s) | 95 |
| Fnu4HI | GCNGC | 5 cut(s) | 82, 136, 1350, 2026, 2029 |
| FokI | GGATG | 8 cut(s) | 32, 481, 1118, 1154, 1211, 1378, 1982, 1999 |
| FriOI | GRGCYC | 3 cut(s) | 1809, 1831, 1852 |
| Fsp4HI | GCNGC | 5 cut(s) | 82, 136, 1350, 2026, 2029 |
| GluI | GCNGC | 5 cut(s) | 82, 136, 1350, 2026, 2029 |
| GsaI | CCCAGC | 2 cut(s) | 1818, 2035 |
| GsuI | CTGGAG | 1 cut(s) | 719 |
| HaeIII | GGCC | 3 cut(s) | 279, 1300, 1349 |
| HapII | CCGG | 1 cut(s) | 524 |
| HgaI | GACGC | 1 cut(s) | 851 |
| HindIII | AAGCTT | 1 cut(s) | 387 |
| HinfI | GANTC | 6 cut(s) | 203, 570, 877, 1137, 1786, 2017 |
| HpaII | CCGG | 1 cut(s) | 524 |
| HphI | GGTGA | 5 cut(s) | 197, 232, 1405, 1488, 2174 |
| Hpy166II | GTNNAC | 2 cut(s) | 96, 148 |
| Hpy188I | TCNGA | 7 cut(s) | 366, 607, 625, 784, 882, 1287, 1476 |
| Hpy188III | TCNNGA | 6 cut(s) | 900, 1134, 1276, 1862, 2087, 2116 |
| Hpy8I | GTNNAC | 2 cut(s) | 96, 148 |
| Hpy99I | CGWCG | 1 cut(s) | 479 |
| HpyCH4III | ACNGT | 4 cut(s) | 497, 709, 1083, 1507 |
| HpyCH4IV | ACGT | 4 cut(s) | 67, 327, 994, 1858 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 285, 294, 851, 1214, 1346, 1696, 1804, 1847, 1877 |
| HpyF3I | CTNAG | 7 cut(s) | 228, 483, 624, 984, 1191, 1328, 1884 |
| HpySE526I | ACGT | 4 cut(s) | 67, 327, 994, 1858 |
| Ksp22I | TGATCA | 4 cut(s) | 348, 444, 1893, 2164 |
| LguI | GCTCTTC | 1 cut(s) | 1836 |
| LmnI | GCTCC | 4 cut(s) | 366, 1578, 1826, 1903 |
| Lsp1109I | GCAGC | 4 cut(s) | 68, 147, 2012, 2040 |
| MaeII | ACGT | 4 cut(s) | 67, 327, 994, 1858 |
| MaeIII | GTNAC | 2 cut(s) | 712, 2035 |
| MbiI | CCGCTC | 1 cut(s) | 1352 |
| MboII | GAAGA | 8 cut(s) | 189, 579, 587, 757, 1471, 1568, 1823, 2026 |
| MfeI | CAATTG | 1 cut(s) | 1172 |
| MflI | RGATCY | 2 cut(s) | 1371, 1476 |
| MhlI | GDGCHC | 4 cut(s) | 1329, 1809, 1831, 1852 |
| MlsI | TGGCCA | 1 cut(s) | 279 |
| MluNI | TGGCCA | 1 cut(s) | 279 |
| MlyI | GAGTC | 2 cut(s) | 212, 2026 |
| Mox20I | TGGCCA | 1 cut(s) | 279 |
| MroXI | GAANNNNTTC | 1 cut(s) | 876 |
| MscI | TGGCCA | 1 cut(s) | 279 |
| MseI | TTAA | 4 cut(s) | 1034, 1077, 1659, 1680 |
| MslI | CAYNNNNRTG | 2 cut(s) | 824, 2126 |
| Msp20I | TGGCCA | 1 cut(s) | 279 |
| MspA1I | CMGCKG | 1 cut(s) | 2031 |
| MspI | CCGG | 1 cut(s) | 524 |
| MspR9I | CCNGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| MunI | CAATTG | 1 cut(s) | 1172 |
| MvaI | CCWGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 285, 294, 851, 1214, 1346, 1696, 1804, 1847, 1877 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NheI | GCTAGC | 3 cut(s) | 131, 1841, 2143 |
| NlaIV | GGNNCC | 2 cut(s) | 522, 1905 |
| NmuCI | GTSAC | 1 cut(s) | 2035 |
| NspI | RCATGY | 1 cut(s) | 1585 |
| NspV | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| PaeI | GCATGC | 1 cut(s) | 1585 |
| PceI | AGGCCT | 1 cut(s) | 1300 |
| PciSI | GCTCTTC | 1 cut(s) | 1836 |
| PdmI | GAANNNNTTC | 1 cut(s) | 876 |
| PfeI | GAWTC | 4 cut(s) | 570, 877, 1137, 1786 |
| PfoI | TCCNGGA | 1 cut(s) | 1022 |
| PinAI | ACCGGT | 1 cut(s) | 523 |
| PkrI | GCNGC | 5 cut(s) | 83, 137, 1351, 2027, 2030 |
| PleI | GAGTC | 2 cut(s) | 211, 2025 |
| PpsI | GAGTC | 2 cut(s) | 211, 2025 |
| Ppu21I | YACGTR | 1 cut(s) | 995 |
| PsiI | TTATAA | 1 cut(s) | 72 |
| Psp124BI | GAGCTC | 1 cut(s) | 1831 |
| Psp6I | CCWGG | 7 cut(s) | 242, 412, 505, 1022, 1295, 1711, 2020 |
| PspFI | CCCAGC | 2 cut(s) | 1814, 2031 |
| PspGI | CCWGG | 7 cut(s) | 242, 412, 505, 1022, 1295, 1711, 2020 |
| PspN4I | GGNNCC | 2 cut(s) | 522, 1905 |
| PstI | CTGCAG | 1 cut(s) | 2030 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1891 |
| PsuI | RGATCY | 2 cut(s) | 1371, 1476 |
| PvuII | CAGCTG | 1 cut(s) | 2031 |
| RsaI | GTAC | 2 cut(s) | 406, 740 |
| RsaNI | GTAC | 2 cut(s) | 405, 739 |
| RseI | CAYNNNNRTG | 2 cut(s) | 824, 2126 |
| SacI | GAGCTC | 1 cut(s) | 1831 |
| SapI | GCTCTTC | 1 cut(s) | 1836 |
| SaqAI | TTAA | 4 cut(s) | 1034, 1077, 1659, 1680 |
| SatI | GCNGC | 5 cut(s) | 82, 136, 1350, 2026, 2029 |
| SchI | GAGTC | 2 cut(s) | 212, 2026 |
| ScrFI | CCNGG | 7 cut(s) | 244, 414, 507, 1024, 1297, 1713, 2022 |
| SduI | GDGCHC | 4 cut(s) | 1329, 1809, 1831, 1852 |
| SfcI | CTRYAG | 2 cut(s) | 55, 2026 |
| SfuI | TTCGAA | 3 cut(s) | 759, 1420, 1445 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 824, 2126 |
| SmlI | CTYRAG | 2 cut(s) | 99, 1141 |
| SmoI | CTYRAG | 2 cut(s) | 99, 1141 |
| SnaBI | TACGTA | 1 cut(s) | 995 |
| SpeI | ACTAGT | 1 cut(s) | 1654 |
| SphI | GCATGC | 1 cut(s) | 1585 |
| SseBI | AGGCCT | 1 cut(s) | 1300 |
| SsiI | CCGC | 4 cut(s) | 517, 563, 581, 1350 |
| SstI | GAGCTC | 1 cut(s) | 1831 |
| StuI | AGGCCT | 1 cut(s) | 1300 |
| StyD4I | CCNGG | 7 cut(s) | 242, 412, 505, 1022, 1295, 1711, 2020 |
| StyI | CCWWGG | 1 cut(s) | 1747 |
| TaaI | ACNGT | 4 cut(s) | 497, 709, 1083, 1507 |
| TaiI | ACGT | 4 cut(s) | 70, 330, 997, 1861 |
| TauI | GCSGC | 1 cut(s) | 1352 |
| TfiI | GAWTC | 4 cut(s) | 570, 877, 1137, 1786 |
| Tru1I | TTAA | 4 cut(s) | 1034, 1077, 1659, 1680 |
| Tru9I | TTAA | 4 cut(s) | 1034, 1077, 1659, 1680 |
| TscAI | CASTG | 5 cut(s) | 454, 518, 1327, 1336, 1392 |
| TseFI | GTSAC | 1 cut(s) | 2035 |
| TseI | GCWGC | 4 cut(s) | 81, 135, 2025, 2028 |
| Tsp45I | GTSAC | 1 cut(s) | 2035 |
| TspRI | CASTG | 5 cut(s) | 454, 518, 1327, 1336, 1392 |
| XapI | RAATTY | 4 cut(s) | 679, 934, 1027, 1996 |
| XceI | RCATGY | 1 cut(s) | 1585 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1547, 2028 |
| XmiI | GTMKAC | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 1 cut(s) | 876 |