Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386063.1

Orthogroup ID

OG0009782

Physical Location & Seq

Genomic Coordinates Forward (+)

65 .. 1192

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386063.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 725 bp

atgtatggcactaactgtccaattctacctggaaagaacttcacttacaatatccaagtgaaggatcagattggtagctttttctacttcccctcatttttgttccacaaagctgctggaggctttggtggcatcagaatctggagccgtcctaagattccggttcctttccctaatcctgctggagaccacactgtactagctggcgactggtttaaagctagtcattatatactgagacgatacttcttggagcgtggtcgcaatcttcccttgcctgatggtcttctcatcaacggtcgtggatggaatggatacacattcactgttgaaccaggcaagacatataggtttaggatatcaaatgtagggcttacgacatcccttaactttagaattcaaggacataagatgaaattggtggaggtggaaggatctcatacacttcagaacacatatgatgcacttgatatccatctggggcagtcctattctgtcctggtcacagctgatcagccagctcaggactactacgtggtcgtctcttcccgcttcaccaccaagatactcaccaccacagccattcttcactacagcaattcgcgcaagggagtttcaggtcctatcccttgggggcctaccaatgaggttgcttggtccctcaaccaagcaagatctatacgatggaatttgacagctagtggacctaggcctaatcctcaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

242

Amino Acids

27.15

Weight (kDa)

9.92

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22010
fragaria_vesca	FvH4_3g01840
malus_domestica	MD05G1348500.v1.1 MD10G1323500.v1.1
prunus_persica	Prupe.4G018800_v2.0.a1 Prupe.4G018800_v2.0.a1 Prupe.4G214400_v2.0.a1
pyrus_communis	pycom05g31590 pycom10g27380
rosa_chinensis	RchiOBHm_Chr5g0002711
rosa_laevigata	RLG00000031053
rosa_multiflora	Rmu_co8386063.1_g000001 Rmu_sc0037618.1_g000001 Rmu_sc0039838.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073170
rosa_rugosa	Rorug04G0398600
rosa_samantha	Rh5AG021800 Rh5BG024700 Rh5CG024100 Rh5DG023100
rosa_wichuraiana	Rw5G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	604
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	2 cut(s)	72, 442
AcsI	RAATTY	2 cut(s)	396, 688
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	332, 401
AjnI	CCWGG	3 cut(s)	28, 334, 498
AluBI	AGCT	7 cut(s)	78, 113, 203, 221, 509, 521, 698
AluI	AGCT	7 cut(s)	78, 113, 203, 221, 509, 521, 698
Alw26I	GTCTC	3 cut(s)	180, 232, 547
AlwI	GGATC	2 cut(s)	72, 442
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	2 cut(s)	635, 710
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	2 cut(s)	396, 688
AspA2I	CCTAGG	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	4 cut(s)	620, 635, 657, 704
AsuHPI	GGTGA	2 cut(s)	547, 562
AvaII	GGWCC	3 cut(s)	620, 657, 704
AvrII	CCTAGG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	4 cut(s)	275, 300, 483, 678
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	3 cut(s)	30, 336, 500
BciVI	GTATCC	1 cut(s)	308
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	180, 232, 547
BfaI	CTAG	4 cut(s)	200, 222, 699, 708
BfmI	CTRYAG	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	674
BisI	GCNGC	1 cut(s)	114
BlnI	CCTAGG	1 cut(s)	707
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	3 cut(s)	30, 336, 500
Bme18I	GGWCC	3 cut(s)	620, 657, 704
BmgT120I	GGNCC	4 cut(s)	620, 635, 657, 704
BmiI	GGNNCC	4 cut(s)	146, 165, 636, 659
BmrFI	CCNGG	3 cut(s)	30, 336, 500
BmsI	GCATC	2 cut(s)	141, 451
BpiI	GAAGAC	1 cut(s)	278
BpmI	CTGGAG	3 cut(s)	138, 163, 204
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	705
BsaAI	YACGTR	1 cut(s)	535
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	629, 707
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	3 cut(s)	30, 336, 500
BseDI	CCNNGG	2 cut(s)	629, 707
BseGI	GGATG	2 cut(s)	311, 380
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	227, 536
BseNI	ACTGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	604
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	637, 712
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	3 cut(s)	180, 232, 547
BsmBI	CGTCTC	2 cut(s)	232, 547
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	637, 712
Bso31I	GGTCTC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	64, 434, 511, 674
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	2 cut(s)	637, 712
BspCNI	CTCAG	2 cut(s)	228, 535
BspFNI	CGCG	1 cut(s)	604
BspLI	GGNNCC	4 cut(s)	146, 165, 636, 659
BspPI	GGATC	2 cut(s)	72, 442
BspTNI	GGTCTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	629, 707
BssMI	GATC	4 cut(s)	64, 434, 511, 674
BssT1I	CCWWGG	2 cut(s)	629, 707
Bst2UI	CCWGG	3 cut(s)	30, 336, 500
Bst4CI	ACNGT	4 cut(s)	17, 196, 299, 328
Bst6I	CTCTTC	1 cut(s)	550
BstBAI	YACGTR	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	205, 519
BstDEI	CTNAG	3 cut(s)	153, 236, 522
BstF5I	GGATG	2 cut(s)	311, 380
BstFNI	CGCG	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	67, 437, 514, 677
BstMAI	GTCTC	3 cut(s)	180, 232, 547
BstMBI	GATC	4 cut(s)	64, 434, 511, 674
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 603
BstNI	CCWGG	3 cut(s)	30, 336, 500
BstSCI	CCNGG	3 cut(s)	28, 334, 498
BstSFI	CTRYAG	1 cut(s)	592
BstUI	CGCG	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	434, 674
BstYI	RGATCY	2 cut(s)	434, 674
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	637, 712
BtsCI	GGATG	2 cut(s)	311, 380
BtsIMutI	CAGTG	2 cut(s)	192, 324
Cac8I	GCNNGC	2 cut(s)	205, 519
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	4 cut(s)	620, 635, 657, 704
Csp6I	GTAC	1 cut(s)	197
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	153, 236, 522
DpnI	GATC	4 cut(s)	66, 436, 513, 676
DpnII	GATC	4 cut(s)	64, 434, 511, 674
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	629, 707
Eco147I	AGGCCT	1 cut(s)	712
Eco31I	GGTCTC	1 cut(s)	180
Eco32I	GATATC	2 cut(s)	360, 472
Eco47I	GGWCC	3 cut(s)	620, 657, 704
Eco57I	CTGAAG	1 cut(s)	431
EcoO109I	RGGNCCY	2 cut(s)	620, 635
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	3 cut(s)	28, 334, 498
EcoRV	GATATC	2 cut(s)	360, 472
EcoT14I	CCWWGG	2 cut(s)	629, 707
ErhI	CCWWGG	2 cut(s)	629, 707
Esp3I	CGTCTC	2 cut(s)	232, 547
FaqI	GGGAC	1 cut(s)	643
FauI	CCCGC	1 cut(s)	557
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	318, 367
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	4 cut(s)	200, 222, 699, 708
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	1 cut(s)	114
GsuI	CTGGAG	3 cut(s)	138, 163, 204
HaeIII	GGCC	2 cut(s)	637, 712
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	606
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	138, 157
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	547, 562
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	3 cut(s)	69, 137, 450
Hpy188III	TCNNGA	2 cut(s)	142, 524
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	2 cut(s)	55, 425
HpyCH4III	ACNGT	4 cut(s)	17, 196, 299, 328
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 603
HpyF3I	CTNAG	3 cut(s)	153, 236, 522
HpySE526I	ACGT	1 cut(s)	534
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	64, 434, 511, 674
LmnI	GCTCC	2 cut(s)	144, 253
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	141, 451
MaeI	CTAG	4 cut(s)	200, 222, 699, 708
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	4 cut(s)	66, 436, 513, 676
MboI	GATC	4 cut(s)	64, 434, 511, 674
MboII	GAAGA	4 cut(s)	260, 278, 537, 578
MflI	RGATCY	2 cut(s)	434, 674
MluCI	AATT	5 cut(s)	21, 396, 416, 598, 688
MnlI	CCTC	5 cut(s)	103, 113, 418, 640, 671
MseI	TTAA	2 cut(s)	216, 387
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	30, 336, 500
MvaI	CCWGG	3 cut(s)	30, 336, 500
MvnI	CGCG	1 cut(s)	604
MwoI	GCNNNNNNNGC	2 cut(s)	129, 603
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	4 cut(s)	64, 434, 511, 674
NlaIV	GGNNCC	4 cut(s)	146, 165, 636, 659
NmuCI	GTSAC	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	138, 157
PkrI	GCNGC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	3 cut(s)	28, 334, 498
PspGI	CCWGG	3 cut(s)	28, 334, 498
PspN4I	GGNNCC	4 cut(s)	146, 165, 636, 659
PspPI	GGNCC	4 cut(s)	620, 635, 657, 704
PspPPI	RGGWCCY	1 cut(s)	620
PsrI	GAACNNNNNNTAC	2 cut(s)	29, 61
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	2 cut(s)	434, 674
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	216, 387
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	4 cut(s)	64, 434, 511, 674
Sau96I	GGNCC	4 cut(s)	620, 635, 657, 704
ScrFI	CCNGG	3 cut(s)	30, 336, 500
SfaNI	GCATC	2 cut(s)	141, 451
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	3 cut(s)	620, 657, 704
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
Sse9I	AATT	5 cut(s)	21, 396, 416, 598, 688
SseBI	AGGCCT	1 cut(s)	712
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	4 cut(s)	200, 222, 699, 708
StuI	AGGCCT	1 cut(s)	712
StyD4I	CCNGG	3 cut(s)	28, 334, 498
StyI	CCWWGG	2 cut(s)	629, 707
TaaI	ACNGT	4 cut(s)	17, 196, 299, 328
TaiI	ACGT	1 cut(s)	537
TasI	AATT	5 cut(s)	21, 396, 416, 598, 688
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	138, 157
Tru1I	TTAA	2 cut(s)	216, 387
Tru9I	TTAA	2 cut(s)	216, 387
TscAI	CASTG	2 cut(s)	199, 331
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	199, 331
VpaK11BI	GGWCC	3 cut(s)	620, 657, 704
XapI	RAATTY	2 cut(s)	396, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	707
XspI	CTAG	4 cut(s)	200, 222, 699, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.