Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039838.1

Orthogroup ID

OG0009782

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 646

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039838.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 203 bp

ttcatggcgctaatggtgaagacccatataagttaatcacctggaaaatcacttacggcgacatttatcctctgggtgttaagcaacaggggatcttgatcaatgaccaatttccagggcctcaaattgatgctgtgacaaatatgaacttggttatcagtgtgttcaattacttgagtgaaccatttcttatttcttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

66

Amino Acids

7.45

Weight (kDa)

4.52

Isoelectric Point (pI)

19.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22010
fragaria_vesca	FvH4_3g01840
malus_domestica	MD05G1348500.v1.1 MD10G1323500.v1.1
prunus_persica	Prupe.4G018800_v2.0.a1 Prupe.4G018800_v2.0.a1 Prupe.4G214400_v2.0.a1
pyrus_communis	pycom05g31590 pycom10g27380
rosa_chinensis	RchiOBHm_Chr5g0002711
rosa_laevigata	RLG00000031053
rosa_multiflora	Rmu_co8386063.1_g000001 Rmu_sc0037618.1_g000001 Rmu_sc0039838.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073170
rosa_rugosa	Rorug04G0398600
rosa_samantha	Rh5AG021800 Rh5BG024700 Rh5CG024100 Rh5DG023100
rosa_wichuraiana	Rw5G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	168
AjnI	CCWGG	2 cut(s)	40, 114
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	118
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	28, 30
BbsI	GAAGAC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	42, 116
BclI	TGATCA	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	42, 116
BmgT120I	GGNCC	1 cut(s)	118
BmrFI	CCNGG	2 cut(s)	42, 116
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	42, 116
BseDI	CCNNGG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	92, 98
BspANI	GGCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	92, 98
Bst2UI	CCWGG	2 cut(s)	42, 116
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	95, 101
BstMBI	GATC	2 cut(s)	92, 98
BstNI	CCWGG	2 cut(s)	42, 116
BstSCI	CCNGG	2 cut(s)	40, 114
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	1 cut(s)	4
CviJI	RGCY	1 cut(s)	120
CviKI_1	RGCY	1 cut(s)	120
DpnI	GATC	2 cut(s)	94, 100
DpnII	GATC	2 cut(s)	92, 98
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	40, 114
FaeI	CATG	1 cut(s)	7
FaiI	YATR	4 cut(s)	5, 27, 29, 145
FatI	CATG	1 cut(s)	3
FbaI	TGATCA	1 cut(s)	98
GlaI	GCGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HphI	GGTGA	2 cut(s)	28, 30
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	7
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	98
Kzo9I	GATC	2 cut(s)	92, 98
LpnPI	CCDG	6 cut(s)	27, 54, 58, 73, 101, 128
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	2 cut(s)	94, 100
MboI	GATC	2 cut(s)	92, 98
MboII	GAAGA	1 cut(s)	31
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	3 cut(s)	109, 125, 168
MnlI	CCTC	2 cut(s)	80, 131
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	2 cut(s)	34, 80
MspR9I	CCNGG	2 cut(s)	42, 116
MvaI	CCWGG	2 cut(s)	42, 116
NdeII	GATC	2 cut(s)	92, 98
NlaIII	CATG	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	40, 114
PspGI	CCWGG	2 cut(s)	40, 114
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	34, 80
Sau3AI	GATC	2 cut(s)	92, 98
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	42, 116
SetI	ASST	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	109, 125, 168
StyD4I	CCNGG	2 cut(s)	40, 114
TasI	AATT	3 cut(s)	109, 125, 168
Tru1I	TTAA	2 cut(s)	34, 80
Tru9I	TTAA	2 cut(s)	34, 80
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.