Rh5AG021800

L-ascorbate oxidase homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
1521179 .. 1525813
4635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG021800.1

Sequence Viewer

Length: 1344 bp
ATGTATGGCACTAACTGTCCAATTCTACCTGGAAAGAACTTCACTTACAATATCCAAGTGAAGGATCAGATTGGTAGCTTTTTCTACTTCCCCTCATTTTTGTTCCACAAAGCTGCTGGAGGCTTTGGTGGCATCAGAATCTGGAGCCGTCCTAAGATTCCGGTTCCTTTCCCTAATCCTGCTGGAGACCACACTGTACTAGCTGGCGACTGGTTTAAAACTAGTCATTATATACTGAGACGATACTTCTTGGAGCGTGGTCGCAATCTTCCCTTGCCTGATGGTCTTCTCATCAACGGTCGTGGATGGAATGGATACACATTCACTGTTGAACCAGGCAAGACATATAGGTTTAGGATATCAAATGTAGGGCTTACGACATCCCTTAACTTTAGAATTCAAGGACATAAGATGAAATTGGTGGAGGTGGAAGGATCTCATACACTTCAGAACACATATGATGCACTTGATATCCATCTGGGGCAGTCCTATTCTGTCCTGGTCACAGCTGATCAGCCAGCTCAGGACTACTACGTGGTCGTCTCTTCCCGCTTCACCACCAAGATACTCACCACCACAGCCATTCTTCACTACAGCAATTCGCGCAAGGGAGTTTCAGGTCCTATCCCTTGGGGGCCTACCAATGAGGTTGCTTGGTCCCTCAACCAAGCAAGATCTATACGATGGAATTTGACAGCTAGTGGACCTAGGCCTAATCCTCAAGGCTCATACCACTATGGAATGATCAAGCCAGCCAGGACAATTATGCTTGCAAACTCTGCACCCTATATCAATGGCAAGCAGAGGTATGCAGTCAACGGTGTCTCTTATGTTCCACCAGACACTCCTTTGAAACTGGCTGATTACTTCAACATTCCGGGAGTTTACAATCTCGGAAGCATTCCTACCAATCCTCCAGGAGGAAATGGTGGCTACCTGCAAACCTCAGTCATGCACGCCAACTTCCGAGAATTTGTTGAGATTGTTTTCCAAAATTGGGAAGATTCTGTGCAATCATGGCACATTGACGGCTATTCGTTCTTTGTACTGGGGATGGATGGAGGACAATGGACTCAAGGAAGTAGAGCACGTTACAATTTGAGAGACACAGTTGCGCGCTCCACTGTTCAGGTGTATCCAAGGTCATGGACTGCAATCTCCGTGGCATTGGACAATGTGGGAATGTGGAATGTGAGGTCTCAGAATTGGGCAAGGCAGTACTTGGGACAGCAGTTCTATCTGAGAGTATACTCTCCTGCTCATTCATGGAGAGATGAATTACCAATTCCAAGAAATGCTATTCTTTGTGGCAGGGCAAGAGGTCGCCACACCAGGCCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

50.52

Weight (kDa)

9.89

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 2 - 50 1.2e-11 Multicopper oxidase
Cu-oxidase PF00394 63 - 201 4.5e-44 Multicopper oxidase
Cu-oxidase_2 PF07731 281 - 419 1.9e-32 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 945
AccI GTMKAC 1 cut(s) 1248
AccII CGCG 2 cut(s) 604, 1117
AciI CCGC 1 cut(s) 550
AclWI GGATC 2 cut(s) 72, 442
AcsI RAATTY 3 cut(s) 396, 688, 971
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 3 cut(s) 198, 1047, 1220
AfiI CCNNNNNNNGG 3 cut(s) 61, 920, 997
AgsI TTSAA 4 cut(s) 332, 401, 853, 871
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 6 cut(s) 28, 334, 498, 755, 916, 1331
AluBI AGCT 6 cut(s) 78, 113, 203, 509, 521, 698
AluI AGCT 6 cut(s) 78, 113, 203, 509, 521, 698
Alw21I GWGCWC 1 cut(s) 1090
Alw26I GTCTC 6 cut(s) 180, 232, 547, 829, 1098, 1203
AlwI GGATC 2 cut(s) 72, 442
AlwNI CAGNNNCTG 1 cut(s) 141
AoxI GGCC 3 cut(s) 635, 710, 1334
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 3 cut(s) 396, 688, 971
AspA2I CCTAGG 1 cut(s) 707
AspLEI GCGC 3 cut(s) 606, 1117, 1119
AspS9I GGNCC 4 cut(s) 620, 635, 657, 704
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 2 cut(s) 547, 562
AvaII GGWCC 3 cut(s) 620, 657, 704
AvrII CCTAGG 1 cut(s) 707
BarI GAAGNNNNNNTAC 2 cut(s) 889, 921
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 1090
BbvI GCAGC 1 cut(s) 100
BccI CCATC 6 cut(s) 275, 300, 483, 678, 1048, 1052
BceAI ACGGC 2 cut(s) 132, 1045
BciT130I CCWGG 6 cut(s) 30, 336, 500, 757, 918, 1333
BciVI GTATCC 2 cut(s) 308, 1146
BclI TGATCA 2 cut(s) 511, 744
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 6 cut(s) 180, 232, 547, 829, 1098, 1203
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 4 cut(s) 200, 222, 699, 708
BfmI CTRYAG 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 945
BfuI GTATCC 2 cut(s) 308, 1146
BglII AGATCT 1 cut(s) 674
BisI GCNGC 1 cut(s) 114
BlnI CCTAGG 1 cut(s) 707
BlsI GCNGC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 1220
Bme1390I CCNGG 7 cut(s) 30, 336, 500, 757, 879, 918, 1333
Bme18I GGWCC 3 cut(s) 620, 657, 704
BmgT120I GGNCC 4 cut(s) 620, 635, 657, 704
BmiI GGNNCC 4 cut(s) 146, 165, 636, 659
BmrFI CCNGG 7 cut(s) 30, 336, 500, 757, 879, 918, 1333
BmrI ACTGGG 1 cut(s) 1058
BmsI GCATC 2 cut(s) 141, 451
BmuI ACTGGG 1 cut(s) 1058
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 4 cut(s) 138, 163, 204, 900
Bpu10I CCTNAGC 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 705, 1059
BpuMI CCSGG 1 cut(s) 879
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 474
BsaI GGTCTC 2 cut(s) 180, 1203
BsaJI CCNNGG 4 cut(s) 629, 707, 1139, 1161
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 898, 928
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 920, 997
Bse1I ACTGG 3 cut(s) 215, 861, 1053
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 6 cut(s) 30, 336, 500, 757, 918, 1333
BseDI CCNNGG 4 cut(s) 629, 707, 1139, 1161
BseGI GGATG 4 cut(s) 311, 380, 1059, 1063
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 61, 920, 997
BseMII CTCAG 5 cut(s) 227, 536, 960, 1214, 1232
BseNI ACTGG 3 cut(s) 215, 861, 1053
BsePI GCGCGC 1 cut(s) 1115
BseXI GCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 2 cut(s) 604, 1117
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 3 cut(s) 637, 712, 1336
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 1090
BsiSI CCGG 2 cut(s) 161, 878
BslFI GGGAC 2 cut(s) 643, 1239
BslI CCNNNNNNNGG 3 cut(s) 61, 920, 997
BsmAI GTCTC 6 cut(s) 180, 232, 547, 829, 1098, 1203
BsmBI CGTCTC 2 cut(s) 232, 547
BsmFI GGGAC 2 cut(s) 643, 1239
BsmI GAATGC 1 cut(s) 900
BsnI GGCC 3 cut(s) 637, 712, 1336
Bso31I GGTCTC 2 cut(s) 180, 1203
Bsp1286I GDGCHC 1 cut(s) 1090
Bsp143I GATC 5 cut(s) 64, 434, 511, 674, 744
BspACI CCGC 1 cut(s) 550
BspANI GGCC 3 cut(s) 637, 712, 1336
BspCNI CTCAG 5 cut(s) 228, 535, 959, 1213, 1233
BspFNI CGCG 2 cut(s) 604, 1117
BspLI GGNNCC 4 cut(s) 146, 165, 636, 659
BspMI ACCTGC 1 cut(s) 945
BspPI GGATC 2 cut(s) 72, 442
BspTNI GGTCTC 2 cut(s) 180, 1203
BsrI ACTGG 3 cut(s) 215, 861, 1053
BssECI CCNNGG 4 cut(s) 629, 707, 1139, 1161
BssHII GCGCGC 1 cut(s) 1115
BssMI GATC 5 cut(s) 64, 434, 511, 674, 744
BssNAI GTATAC 1 cut(s) 1249
BssT1I CCWWGG 3 cut(s) 629, 707, 1139
Bst1107I GTATAC 1 cut(s) 1249
Bst2UI CCWGG 6 cut(s) 30, 336, 500, 757, 918, 1333
Bst4CI ACNGT 7 cut(s) 17, 196, 299, 328, 821, 1111, 1126
Bst6I CTCTTC 1 cut(s) 550
BstAPI GCANNNNNTGC 1 cut(s) 779
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 7 cut(s) 205, 519, 753, 771, 800, 957, 1117
BstDEI CTNAG 6 cut(s) 153, 236, 522, 946, 1200, 1241
BstDSI CCRYGG 1 cut(s) 1161
BstENI CCTNNNNNAGG 1 cut(s) 918
BstF5I GGATG 4 cut(s) 311, 380, 1059, 1063
BstFNI CGCG 2 cut(s) 604, 1117
BstHHI GCGC 3 cut(s) 606, 1117, 1119
BstKTI GATC 5 cut(s) 67, 437, 514, 677, 747
BstMAI GTCTC 6 cut(s) 180, 232, 547, 829, 1098, 1203
BstMBI GATC 5 cut(s) 64, 434, 511, 674, 744
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 4 cut(s) 129, 603, 779, 1018
BstNI CCWGG 6 cut(s) 30, 336, 500, 757, 918, 1333
BstSCI CCNGG 7 cut(s) 28, 334, 498, 755, 877, 916, 1331
BstSFI CTRYAG 1 cut(s) 592
BstUI CGCG 2 cut(s) 604, 1117
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 434, 674
BstXI CCANNNNNNTGG 1 cut(s) 1146
BstYI RGATCY 2 cut(s) 434, 674
BstZ17I GTATAC 1 cut(s) 1249
BsuI GTATCC 2 cut(s) 308, 1146
BsuRI GGCC 3 cut(s) 637, 712, 1336
BtgI CCRYGG 1 cut(s) 1161
BtsCI GGATG 4 cut(s) 311, 380, 1059, 1063
BtsIMutI CAGTG 3 cut(s) 192, 324, 1122
BveI ACCTGC 1 cut(s) 945
Cac8I GCNNGC 7 cut(s) 205, 519, 753, 771, 800, 957, 1117
CaiI CAGNNNCTG 1 cut(s) 141
CfoI GCGC 3 cut(s) 606, 1117, 1119
Cfr13I GGNCC 4 cut(s) 620, 635, 657, 704
Csp6I GTAC 3 cut(s) 197, 1046, 1219
CspCI CAANNNNNGTGG 4 cut(s) 283, 318, 1143, 1178
CviAII CATG 4 cut(s) 952, 1017, 1146, 1266
CviQI GTAC 3 cut(s) 197, 1046, 1219
DdeI CTNAG 6 cut(s) 153, 236, 522, 946, 1200, 1241
DpnI GATC 5 cut(s) 66, 436, 513, 676, 746
DpnII GATC 5 cut(s) 64, 434, 511, 674, 744
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
Eco130I CCWWGG 3 cut(s) 629, 707, 1139
Eco147I AGGCCT 2 cut(s) 712, 1336
Eco31I GGTCTC 2 cut(s) 180, 1203
Eco32I GATATC 2 cut(s) 360, 472
Eco47I GGWCC 3 cut(s) 620, 657, 704
Eco57I CTGAAG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 918
EcoO109I RGGNCCY 2 cut(s) 620, 635
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 6 cut(s) 28, 334, 498, 755, 916, 1331
EcoRV GATATC 2 cut(s) 360, 472
EcoT14I CCWWGG 3 cut(s) 629, 707, 1139
ErhI CCWWGG 3 cut(s) 629, 707, 1139
Esp3I CGTCTC 2 cut(s) 232, 547
FaeI CATG 4 cut(s) 955, 1020, 1149, 1269
FaqI GGGAC 2 cut(s) 643, 1239
FatI CATG 4 cut(s) 951, 1016, 1145, 1265
FauI CCCGC 1 cut(s) 557
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 2 cut(s) 511, 744
FblI GTMKAC 1 cut(s) 1248
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 4 cut(s) 318, 367, 1066, 1070
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 4 cut(s) 200, 222, 699, 708
GlaI GCGC 3 cut(s) 605, 1116, 1118
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 4 cut(s) 138, 163, 204, 900
HaeIII GGCC 3 cut(s) 637, 712, 1336
HapII CCGG 2 cut(s) 161, 878
HhaI GCGC 3 cut(s) 606, 1117, 1119
Hin1II CATG 4 cut(s) 955, 1020, 1149, 1269
Hin6I GCGC 3 cut(s) 604, 1115, 1117
HinP1I GCGC 3 cut(s) 604, 1115, 1117
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 4 cut(s) 138, 157, 1004, 1072
HpaII CCGG 2 cut(s) 161, 878
HphI GGTGA 2 cut(s) 547, 562
Hpy166II GTNNAC 4 cut(s) 704, 817, 886, 1249
Hpy188I TCNGA 8 cut(s) 69, 137, 450, 896, 968, 1203, 1242, 1343
Hpy188III TCNNGA 2 cut(s) 142, 524
Hpy8I GTNNAC 4 cut(s) 704, 817, 886, 1249
HpyAV CCTTC 2 cut(s) 55, 425
HpyCH4III ACNGT 7 cut(s) 17, 196, 299, 328, 821, 1111, 1126
HpyCH4IV ACGT 2 cut(s) 534, 1090
HpyCH4V TGCA 8 cut(s) 464, 773, 782, 812, 940, 955, 1012, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 603, 779, 1018
HpyF3I CTNAG 6 cut(s) 153, 236, 522, 946, 1200, 1241
HpySE526I ACGT 2 cut(s) 534, 1090
Hsp92II CATG 4 cut(s) 955, 1020, 1149, 1269
HspAI GCGC 3 cut(s) 604, 1115, 1117
Ksp22I TGATCA 2 cut(s) 511, 744
Kzo9I GATC 5 cut(s) 64, 434, 511, 674, 744
LmnI GCTCC 3 cut(s) 144, 253, 1124
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 141, 451
MaeI CTAG 4 cut(s) 200, 222, 699, 708
MaeII ACGT 2 cut(s) 534, 1090
MaeIII GTNAC 2 cut(s) 502, 1091
MalI GATC 5 cut(s) 66, 436, 513, 676, 746
MboI GATC 5 cut(s) 64, 434, 511, 674, 744
MboII GAAGA 5 cut(s) 260, 278, 537, 578, 1013
MflI RGATCY 2 cut(s) 434, 674
MhlI GDGCHC 1 cut(s) 1090
MlyI GAGTC 1 cut(s) 1066
MseI TTAA 2 cut(s) 216, 387
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 2 cut(s) 161, 878
MspR9I CCNGG 7 cut(s) 30, 336, 500, 757, 879, 918, 1333
Mva1269I GAATGC 1 cut(s) 900
MvaI CCWGG 6 cut(s) 30, 336, 500, 757, 918, 1333
MvnI CGCG 2 cut(s) 604, 1117
MwoI GCNNNNNNNGC 4 cut(s) 129, 603, 779, 1018
NciI CCSGG 1 cut(s) 879
NdeI CATATG 1 cut(s) 457
NdeII GATC 5 cut(s) 64, 434, 511, 674, 744
NlaIII CATG 4 cut(s) 955, 1020, 1149, 1269
NlaIV GGNNCC 4 cut(s) 146, 165, 636, 659
NmuCI GTSAC 1 cut(s) 502
PauI GCGCGC 1 cut(s) 1115
PceI AGGCCT 2 cut(s) 712, 1336
PctI GAATGC 1 cut(s) 900
PfeI GAWTC 3 cut(s) 138, 157, 1004
PfoI TCCNGGA 2 cut(s) 877, 916
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 1066
Ppu21I YACGTR 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 6 cut(s) 28, 334, 498, 755, 916, 1331
PspGI CCWGG 6 cut(s) 28, 334, 498, 755, 916, 1331
PspN4I GGNNCC 4 cut(s) 146, 165, 636, 659
PspPI GGNCC 4 cut(s) 620, 635, 657, 704
PspPPI RGGWCCY 1 cut(s) 620
PsrI GAACNNNNNNTAC 2 cut(s) 29, 61
PstNI CAGNNNCTG 1 cut(s) 141
PsuI RGATCY 2 cut(s) 434, 674
PteI GCGCGC 1 cut(s) 1115
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 3 cut(s) 198, 1047, 1220
RsaNI GTAC 3 cut(s) 197, 1046, 1219
SaqAI TTAA 2 cut(s) 216, 387
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 5 cut(s) 64, 434, 511, 674, 744
Sau96I GGNCC 4 cut(s) 620, 635, 657, 704
ScaI AGTACT 1 cut(s) 1220
SchI GAGTC 1 cut(s) 1066
ScrFI CCNGG 7 cut(s) 30, 336, 500, 757, 879, 918, 1333
SduI GDGCHC 1 cut(s) 1090
SfaNI GCATC 2 cut(s) 141, 451
SfcI CTRYAG 1 cut(s) 592
SinI GGWCC 3 cut(s) 620, 657, 704
SmlI CTYRAG 2 cut(s) 720, 1074
SmoI CTYRAG 2 cut(s) 720, 1074
SpeI ACTAGT 1 cut(s) 221
SseBI AGGCCT 2 cut(s) 712, 1336
SsiI CCGC 1 cut(s) 550
SspMI CTAG 4 cut(s) 200, 222, 699, 708
StuI AGGCCT 2 cut(s) 712, 1336
StyD4I CCNGG 7 cut(s) 28, 334, 498, 755, 877, 916, 1331
StyI CCWWGG 3 cut(s) 629, 707, 1139
TaaI ACNGT 7 cut(s) 17, 196, 299, 328, 821, 1111, 1126
TaiI ACGT 2 cut(s) 537, 1093
TatI WGTACW 3 cut(s) 196, 1045, 1218
TfiI GAWTC 3 cut(s) 138, 157, 1004
Tru1I TTAA 2 cut(s) 216, 387
Tru9I TTAA 2 cut(s) 216, 387
TscAI CASTG 3 cut(s) 199, 331, 1129
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 3 cut(s) 428, 1254, 1290
TspGWI ACGGA 1 cut(s) 1150
TspRI CASTG 3 cut(s) 199, 331, 1129
VpaK11BI GGWCC 3 cut(s) 620, 657, 704
XagI CCTNNNNNAGG 1 cut(s) 918
XapI RAATTY 3 cut(s) 396, 688, 971
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XmaJI CCTAGG 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 1248
XspI CTAG 4 cut(s) 200, 222, 699, 708
ZrmI AGTACT 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.