Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037618.1

Orthogroup ID

OG0009782

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1517

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037618.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 307 bp

atgagagagagtaggatttattgtttttgcattgctttggtgctggttttagttcatggcgctaatggtgaagacccatataagttaatcacctggaaaatcacttacggcgacatttatcctctgggtgttaagcaacaggggatcttgatcaatgaccaatttccagggcctcaaattgatgctgtgacaaatatgaacttggttatcagtgtgttcaattacttgagtgagccatttcttatttcttgggatggtatacagcagagaaggaactcatggcaggatggaatgtatggcactaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

102

Amino Acids

11.67

Weight (kDa)

5.07

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22010
fragaria_vesca	FvH4_3g01840
malus_domestica	MD05G1348500.v1.1 MD10G1323500.v1.1
prunus_persica	Prupe.4G018800_v2.0.a1 Prupe.4G018800_v2.0.a1 Prupe.4G214400_v2.0.a1
pyrus_communis	pycom05g31590 pycom10g27380
rosa_chinensis	RchiOBHm_Chr5g0002711
rosa_laevigata	RLG00000031053
rosa_multiflora	Rmu_co8386063.1_g000001 Rmu_sc0037618.1_g000001 Rmu_sc0039838.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073170
rosa_rugosa	Rorug04G0398600
rosa_samantha	Rh5AG021800 Rh5BG024700 Rh5CG024100 Rh5DG023100
rosa_wichuraiana	Rw5G002030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	92, 166
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	80, 82
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	2 cut(s)	248, 281
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	94, 168
BclI	TGATCA	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	94, 168
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	94, 168
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	94, 168
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	259, 292
BseJI	GATNNNNATC	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	144, 150
BspANI	GGCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	144, 150
BssNAI	GTATAC	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	94, 168
BstF5I	GGATG	2 cut(s)	259, 292
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	147, 153
BstMBI	GATC	2 cut(s)	144, 150
BstNI	CCWGG	2 cut(s)	94, 168
BstSCI	CCNGG	2 cut(s)	92, 166
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BstZ17I	GTATAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	259, 292
BtsIMutI	CAGTG	1 cut(s)	217
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	2 cut(s)	56, 279
CviJI	RGCY	2 cut(s)	172, 235
CviKI_1	RGCY	2 cut(s)	172, 235
DpnI	GATC	2 cut(s)	146, 152
DpnII	GATC	2 cut(s)	144, 150
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	92, 166
FaeI	CATG	2 cut(s)	59, 282
FaiI	YATR	7 cut(s)	57, 79, 81, 197, 260, 280, 297
FatI	CATG	2 cut(s)	55, 278
FbaI	TGATCA	1 cut(s)	150
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	2 cut(s)	266, 299
GlaI	GCGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	59, 282
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HphI	GGTGA	2 cut(s)	80, 82
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	59, 282
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	144, 150
LpnPI	CCDG	8 cut(s)	29, 79, 106, 110, 125, 153, 180, 269
LweI	GCATC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	146, 152
MboI	GATC	2 cut(s)	144, 150
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	1 cut(s)	144
MluCI	AATT	3 cut(s)	161, 177, 220
MnlI	CCTC	2 cut(s)	132, 183
MseI	TTAA	2 cut(s)	86, 132
MspR9I	CCNGG	2 cut(s)	94, 168
MvaI	CCWGG	2 cut(s)	94, 168
NdeII	GATC	2 cut(s)	144, 150
NlaIII	CATG	2 cut(s)	59, 282
NmuCI	GTSAC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	92, 166
PspGI	CCWGG	2 cut(s)	92, 166
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	86, 132
Sau3AI	GATC	2 cut(s)	144, 150
Sau96I	GGNCC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	94, 168
SetI	ASST	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	3 cut(s)	161, 177, 220
StyD4I	CCNGG	2 cut(s)	92, 166
TasI	AATT	3 cut(s)	161, 177, 220
Tru1I	TTAA	2 cut(s)	86, 132
Tru9I	TTAA	2 cut(s)	86, 132
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	44, 212
TspRI	CASTG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.