Rmu_co8398623.1_g000001
NAC Family

Inactive leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8398623.1
OG0012108
Physical Location & Seq
Reverse (-)
2 .. 1217
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8398623.1_g000001.1.cds

Sequence Viewer

Length: 1216 bp
atggagcagcaatactactactcaaggtactctaatttcttattcttctctgtgattttacttctccccttggttcaagccggcgacgccgaagctctgttaagcctgaaatcgacactggatccgacgaactcgctgccgtggcggcaaggaagcaatgtgtgtgagtgggaaggtgttagagactgtatgaaaggaagagtcacgaagttggtgttggagtacttaaatttgaccggcactctcgaccagaaaatcctgaaccagctggatcagctccgagttctgagcttcaagggcaactcaatttccggccaaatccccgacctctccggcctcgtcaatctcaagtccctcttcttgaacgacaacaatttctccggcgttttccccgcgtccgtttcgtccctccaccgcttgaaagtcctcgtcctcgccggcaaccacatctccggcgacattccggcgtcgctgctcaatctccgccgtctatatgttctgtatttacaagacaatcagttcagcggcgccattccgccgctcaatcaaacctccctccggtttttcaatgtctctaacaaccaactctccggtgaaatcccgatcacggcggcgctcattcggttcaacgcctcgtcgtttttcggaaacatcaatgtctgcggtctgcagactcacaacaaatgccagaacggcattgctttcccgccgctactcgggccgagttcttatgatggtaaacctacaaagccgaaatccaatcgttccaagctcataaagatcatagcagcaagtgtaggaggttttgtgctgcttgttataagtttgcttctattgttcctattgtgccggaaacacagccgtcgcaaagatgccgagatcagaaacaaaggggctgttcacggcgttgaggggacggagaccggaggaggaggaggaggaggaggtggaggtggggagggtccttcaggcggtggtaggggaggtaataacggtggaaagcaaggggcgttttcgtgggagggtgatggactggggagcctggtgttctgcggtccaggggatcagcaaatgaattacagtctggaggatttactgaaggcttcggctgagacactggggaggggtagtatgggaagtacgtataaagctgtgatggagtctgggtttattgtgacagtgaagaggctcaaggatgcgaggtaccctaggcttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

405

Amino Acids

43.57

Weight (kDa)

9.42

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10850
fragaria_vesca FvH4_4g36460
malus_domestica MD13G1009100.v1.1 MD16G1007100.v1.1
prunus_persica Prupe.1G343600_v2.0.a1
pyrus_communis pycom13g00770 pycom16g00670
rosa_chinensis RchiOBHm_Chr4g0446221
rosa_laevigata RLG00000005680
rosa_multiflora Rmu_co8398623.1_g000001 Rmu_sc0002266.1_g000012 Rmu_sc0040593.1_g000001
rosa_roxburghii Rroxscaffold_5G00386620
rosa_rugosa Rorug04G0368500
rosa_samantha Rh4AG430700 Rh4BG440100 Rh4CG457400 Rh4DG438600
rosa_wichuraiana Rw4G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
Acc65I GGTACC 1 cut(s) 1203
AccB1I GGYRCC 2 cut(s) 527, 1203
AccBSI CCGCTC 1 cut(s) 541
AccII CGCG 1 cut(s) 395
AclWI GGATC 4 cut(s) 116, 129, 279, 1071
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 1 cut(s) 229
AcuI CTGAAG 2 cut(s) 951, 1118
AcyI GRCGYC 3 cut(s) 87, 467, 528
AfaI GTAC 4 cut(s) 29, 224, 1141, 1205
AfiI CCNNNNNNNGG 4 cut(s) 558, 607, 716, 971
AgsI TTSAA 6 cut(s) 77, 295, 364, 421, 568, 628
AjnI CCWGG 2 cut(s) 1041, 1057
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 6 cut(s) 95, 268, 277, 291, 772, 1151
AluI AGCT 6 cut(s) 95, 268, 277, 291, 772, 1151
Alw26I GTCTC 4 cut(s) 177, 577, 914, 1106
AlwI GGATC 4 cut(s) 116, 129, 279, 1071
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 3 cut(s) 313, 334, 719
ApeKI GCWGC 5 cut(s) 7, 136, 472, 788, 811
ApoI RAATTY 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 1203
AspA2I CCTAGG 1 cut(s) 1208
AspLEI GCGC 2 cut(s) 530, 616
AspS9I GGNCC 3 cut(s) 719, 962, 1055
AsuHPI GGTGA 2 cut(s) 605, 1037
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 2 cut(s) 962, 1055
AvrII CCTAGG 1 cut(s) 1208
BamHI GGATCC 1 cut(s) 121
BanI GGYRCC 2 cut(s) 527, 1203
BbvI GCAGC 5 cut(s) 19, 123, 459, 798, 800
BccI CCATC 3 cut(s) 728, 1022, 1150
BceAI ACGGC 6 cut(s) 124, 471, 624, 709, 846, 919
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 2 cut(s) 1043, 1059
BcoDI GTCTC 4 cut(s) 177, 577, 914, 1106
BfaI CTAG 1 cut(s) 1209
BfmI CTRYAG 1 cut(s) 668
BfoI RGCGCY 2 cut(s) 531, 617
BglI GCCNNNNNGGC 2 cut(s) 145, 693
BlnI CCTAGG 1 cut(s) 1208
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 1043, 1059
Bme18I GGWCC 2 cut(s) 962, 1055
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 3 cut(s) 719, 962, 1055
BmiI GGNNCC 5 cut(s) 123, 529, 963, 1040, 1205
BmrFI CCNGG 2 cut(s) 1043, 1059
BmrI ACTGGG 2 cut(s) 1043, 1127
BmsI GCATC 2 cut(s) 862, 1186
BmuI ACTGGG 2 cut(s) 1043, 1127
BpmI CTGGAG 1 cut(s) 1106
BpuEI CTTGAG 3 cut(s) 7, 332, 1175
BsaAI YACGTR 1 cut(s) 1143
BsaHI GRCGYC 3 cut(s) 87, 467, 528
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 4 cut(s) 69, 140, 1058, 1208
BsaWI WCCGGW 3 cut(s) 558, 590, 923
Bsc4I CCNNNNNNNGG 4 cut(s) 558, 607, 716, 971
Bse118I RCCGGY 3 cut(s) 80, 236, 437
Bse1I ACTGG 3 cut(s) 123, 1038, 1122
Bse3DI GCAATG 2 cut(s) 163, 696
BseBI CCWGG 2 cut(s) 1043, 1059
BseDI CCNNGG 4 cut(s) 69, 140, 1058, 1208
BseGI GGATG 1 cut(s) 1201
BseLI CCNNNNNNNGG 4 cut(s) 558, 607, 716, 971
BseMI GCAATG 2 cut(s) 163, 696
BseMII CTCAG 2 cut(s) 278, 1101
BseNI ACTGG 3 cut(s) 123, 1038, 1122
BseRI GAGGAG 6 cut(s) 942, 945, 948, 951, 954, 957
BseXI GCAGC 5 cut(s) 19, 123, 459, 798, 800
Bsh1236I CGCG 1 cut(s) 395
BshFI GGCC 3 cut(s) 315, 336, 721
BshNI GGYRCC 2 cut(s) 527, 1203
BsiHKCI CYCGRG 1 cut(s) 716
BslFI GGGAC 3 cut(s) 337, 391, 928
BslI CCNNNNNNNGG 4 cut(s) 558, 607, 716, 971
BsmAI GTCTC 4 cut(s) 177, 577, 914, 1106
BsmFI GGGAC 3 cut(s) 337, 391, 928
BsnI GGCC 3 cut(s) 315, 336, 721
Bso31I GGTCTC 1 cut(s) 914
BsoBI CYCGRG 1 cut(s) 716
Bsp143I GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
BspANI GGCC 3 cut(s) 315, 336, 721
BspCNI CTCAG 2 cut(s) 279, 1102
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 5 cut(s) 123, 529, 963, 1040, 1205
BspMAI CTGCAG 1 cut(s) 672
BspPI GGATC 4 cut(s) 116, 129, 279, 1071
BspT107I GGYRCC 2 cut(s) 527, 1203
BspTNI GGTCTC 1 cut(s) 914
BsrBI CCGCTC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 163, 696
BsrFI RCCGGY 3 cut(s) 80, 236, 437
BsrI ACTGG 3 cut(s) 123, 1038, 1122
BssAI RCCGGY 3 cut(s) 80, 236, 437
BssECI CCNNGG 4 cut(s) 69, 140, 1058, 1208
BssMI GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
BssNI GRCGYC 3 cut(s) 87, 467, 528
BssT1I CCWWGG 2 cut(s) 69, 1208
Bst2UI CCWGG 2 cut(s) 1043, 1059
Bst4CI ACNGT 4 cut(s) 188, 995, 1082, 1180
Bst6I CTCTTC 3 cut(s) 193, 362, 1178
BstACI GRCGYC 3 cut(s) 87, 467, 528
BstBAI YACGTR 1 cut(s) 1143
BstC8I GCNNGC 2 cut(s) 82, 439
BstDEI CTNAG 2 cut(s) 287, 1110
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 1201
BstFNI CGCG 1 cut(s) 395
BstH2I RGCGCY 2 cut(s) 531, 617
BstHHI GCGC 2 cut(s) 530, 616
BstKTI GATC 6 cut(s) 124, 274, 606, 783, 882, 1066
BstMAI GTCTC 4 cut(s) 177, 577, 914, 1106
BstMBI GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
BstMWI GCNNNNNNNGC 7 cut(s) 86, 142, 145, 274, 297, 693, 718
BstNI CCWGG 2 cut(s) 1043, 1059
BstSCI CCNGG 2 cut(s) 1041, 1057
BstSFI CTRYAG 1 cut(s) 668
BstSNI TACGTA 1 cut(s) 1143
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 5 cut(s) 19, 123, 459, 798, 800
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 3 cut(s) 315, 336, 721
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 1201
BtsIMutI CAGTG 3 cut(s) 116, 1115, 1185
Cac8I GCNNGC 2 cut(s) 82, 439
CfoI GCGC 2 cut(s) 530, 616
Cfr10I RCCGGY 3 cut(s) 80, 236, 437
Cfr13I GGNCC 3 cut(s) 719, 962, 1055
CseI GACGC 3 cut(s) 95, 384, 456
Csp6I GTAC 4 cut(s) 28, 223, 1140, 1204
CviQI GTAC 4 cut(s) 28, 223, 1140, 1204
DdeI CTNAG 2 cut(s) 287, 1110
DinI GGCGCC 1 cut(s) 529
DpnI GATC 6 cut(s) 123, 273, 605, 782, 881, 1065
DpnII GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 193, 362, 1178
EarI CTCTTC 3 cut(s) 193, 362, 1178
EciI GGCGGA 2 cut(s) 473, 525
Eco105I TACGTA 1 cut(s) 1143
Eco130I CCWWGG 2 cut(s) 69, 1208
Eco31I GGTCTC 1 cut(s) 914
Eco47I GGWCC 2 cut(s) 962, 1055
Eco57I CTGAAG 2 cut(s) 951, 1118
Eco88I CYCGRG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 962
EcoRII CCWGG 2 cut(s) 1041, 1057
EcoT14I CCWWGG 2 cut(s) 69, 1208
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
ErhI CCWWGG 2 cut(s) 69, 1208
FaiI YATR 9 cut(s) 191, 493, 495, 732, 776, 785, 821, 1133, 1146
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 3 cut(s) 337, 391, 928
FauI CCCGC 2 cut(s) 400, 714
FokI GGATG 1 cut(s) 1208
FspBI CTAG 1 cut(s) 1209
GlaI GCGC 2 cut(s) 529, 615
GsuI CTGGAG 1 cut(s) 1106
HaeII RGCGCY 2 cut(s) 531, 617
HaeIII GGCC 3 cut(s) 315, 336, 721
HgaI GACGC 3 cut(s) 95, 384, 456
HhaI GCGC 2 cut(s) 530, 616
Hin1I GRCGYC 3 cut(s) 87, 467, 528
Hin6I GCGC 2 cut(s) 528, 614
HinP1I GCGC 2 cut(s) 528, 614
HinfI GANTC 3 cut(s) 201, 673, 1160
HphI GGTGA 2 cut(s) 605, 1037
Hpy166II GTNNAC 2 cut(s) 740, 901
Hpy188I TCNGA 5 cut(s) 126, 281, 288, 647, 884
Hpy188III TCNNGA 6 cut(s) 205, 245, 259, 361, 601, 1085
Hpy8I GTNNAC 2 cut(s) 740, 901
Hpy99I CGWCG 5 cut(s) 89, 130, 472, 640, 867
HpyAV CCTTC 3 cut(s) 167, 975, 1093
HpyCH4III ACNGT 4 cut(s) 188, 995, 1082, 1180
HpyCH4IV ACGT 1 cut(s) 1142
HpyCH4V TGCA 1 cut(s) 670
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 142, 145, 274, 297, 693, 718
HpyF3I CTNAG 2 cut(s) 287, 1110
HpySE526I ACGT 1 cut(s) 1142
Hsp92I GRCGYC 3 cut(s) 87, 467, 528
HspAI GCGC 2 cut(s) 528, 614
KasI GGCGCC 1 cut(s) 527
KpnI GGTACC 1 cut(s) 1207
KroI GCCGGC 2 cut(s) 80, 437
KroNI GCCGGC 2 cut(s) 82, 439
Kzo9I GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
LmnI GCTCC 3 cut(s) 4, 282, 1038
Lsp1109I GCAGC 5 cut(s) 19, 123, 459, 798, 800
LweI GCATC 2 cut(s) 862, 1186
MaeI CTAG 1 cut(s) 1209
MaeII ACGT 1 cut(s) 1142
MaeIII GTNAC 2 cut(s) 202, 1174
MalI GATC 6 cut(s) 123, 273, 605, 782, 881, 1065
MbiI CCGCTC 1 cut(s) 541
MboI GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
MboII GAAGA 4 cut(s) 37, 210, 349, 1195
MflI RGATCY 1 cut(s) 121
MluCI AATT 5 cut(s) 34, 229, 306, 373, 1075
Mly113I GGCGCC 1 cut(s) 528
MlyI GAGTC 3 cut(s) 210, 667, 1169
MmeI TCCRAC 2 cut(s) 149, 198
MroNI GCCGGC 2 cut(s) 80, 437
MseI TTAA 2 cut(s) 101, 227
MspA1I CMGCKG 2 cut(s) 268, 525
MspR9I CCNGG 2 cut(s) 1043, 1059
MvaI CCWGG 2 cut(s) 1043, 1059
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 7 cut(s) 86, 142, 145, 274, 297, 693, 718
NaeI GCCGGC 2 cut(s) 82, 439
NarI GGCGCC 1 cut(s) 528
NdeII GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
NgoMIV GCCGGC 2 cut(s) 80, 437
NlaIV GGNNCC 5 cut(s) 123, 529, 963, 1040, 1205
NmeAIII GCCGAG 2 cut(s) 747, 901
NmuCI GTSAC 2 cut(s) 202, 1174
PdiI GCCGGC 2 cut(s) 82, 439
PleI GAGTC 3 cut(s) 209, 667, 1168
PluTI GGCGCC 1 cut(s) 531
PpsI GAGTC 3 cut(s) 209, 667, 1168
Ppu21I YACGTR 1 cut(s) 1143
PpuMI RGGWCCY 1 cut(s) 962
PsiI TTATAA 1 cut(s) 821
Psp5II RGGWCCY 1 cut(s) 962
Psp6I CCWGG 2 cut(s) 1041, 1057
PspGI CCWGG 2 cut(s) 1041, 1057
PspN4I GGNNCC 5 cut(s) 123, 529, 963, 1040, 1205
PspPI GGNCC 3 cut(s) 719, 962, 1055
PspPPI RGGWCCY 1 cut(s) 962
PstI CTGCAG 1 cut(s) 672
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 4 cut(s) 29, 224, 1141, 1205
RsaNI GTAC 4 cut(s) 28, 223, 1140, 1204
SaqAI TTAA 2 cut(s) 101, 227
Sau3AI GATC 6 cut(s) 121, 271, 603, 780, 879, 1063
Sau96I GGNCC 3 cut(s) 719, 962, 1055
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 3 cut(s) 210, 667, 1169
ScrFI CCNGG 2 cut(s) 1043, 1059
SfaNI GCATC 2 cut(s) 862, 1186
SfcI CTRYAG 1 cut(s) 668
SfoI GGCGCC 1 cut(s) 529
SinI GGWCC 2 cut(s) 962, 1055
SmlI CTYRAG 3 cut(s) 22, 347, 1190
SmoI CTYRAG 3 cut(s) 22, 347, 1190
SnaBI TACGTA 1 cut(s) 1143
Sse9I AATT 5 cut(s) 34, 229, 306, 373, 1075
SspDI GGCGCC 1 cut(s) 527
SspMI CTAG 1 cut(s) 1209
StyD4I CCNGG 2 cut(s) 1041, 1057
StyI CCWWGG 2 cut(s) 69, 1208
TaaI ACNGT 4 cut(s) 188, 995, 1082, 1180
TaiI ACGT 1 cut(s) 1145
TaqI TCGA 2 cut(s) 113, 246
TasI AATT 5 cut(s) 34, 229, 306, 373, 1075
TatI WGTACW 1 cut(s) 222
TauI GCSGC 5 cut(s) 148, 528, 541, 614, 712
Tru1I TTAA 2 cut(s) 101, 227
Tru9I TTAA 2 cut(s) 101, 227
TscAI CASTG 3 cut(s) 123, 1122, 1185
TseFI GTSAC 2 cut(s) 202, 1174
TseI GCWGC 5 cut(s) 7, 136, 472, 788, 811
Tsp45I GTSAC 2 cut(s) 202, 1174
TspDTI ATGAA 2 cut(s) 206, 1088
TspGWI ACGGA 2 cut(s) 388, 932
TspRI CASTG 3 cut(s) 123, 1122, 1185
VpaK11BI GGWCC 2 cut(s) 962, 1055
XapI RAATTY 1 cut(s) 229
XmaJI CCTAGG 1 cut(s) 1208
XspI CTAG 1 cut(s) 1209
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.