Rmu_co8439317.1_g000001

Polyphenol oxidase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8439317.1
Physical Location & Seq
Forward (+)
627 .. 1573
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8439317.1_g000001.1.cds

Sequence Viewer

Length: 947 bp
atgtcttctgcttctctaccacccactgctacaatcttttgccccaactccacttcactagccttcatcacttctttcactcccttcttccccaagaaatcccaaaggtcttccttaattacaaaacctaagcaaggctttgtatgcaaggcaacaaacaacaatgaccaaaatcaagatgctatgggaaaattggacaggagaaatatgctcatcggtttgggtgctggcgggctatacggcacggtgggtcttgaaaccaatccgtttgcatttgccgcaccggtgccaccgccggacttagccacgtgcggtccggcggacaagcctgatggttcaactatcgattgctgcccgccaaacaccaccacaatcattgacttcaagctacccgacccgggtccattgcgcaccaggctcgcttgtcaggatgtcgcaaaagaccccgtatacttgggaaaatataaaaaggccgtcgagctcatgcgggcccttcccgaagacgacccacgaagcctggcccagcaggccatggtccactgttcgtattgcgacggtgggtatccaatggccgggttttccgacctcgaaatccaagtccacttctgttggctcttcttccctttccaccgttggtatctctacttctacgagaagatcatgggcaagctcatcgacgaccccactttcgctcttccattctggaactgggacgctccggccggtatgtacatgccgtctatttttaccgacaccacctcctctctgtacgaccaataccgaaacgcagcgcatcaacccccgaagcttctagacctcaattatggtggcaccgacgatgacaccgatgacaagactagaatcaaggagaacctcaccaccatgtaccaacaaatggtctctaaggccacttctcaccgcctcttcttcggtgagccctacagtgc

Protein Analysis

316

Amino Acids

35.19

Weight (kDa)

5.74

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 410
AccB1I GGYRCC 2 cut(s) 286, 830
AccB7I CCANNNNNTGG 1 cut(s) 895
AccI GTMKAC 1 cut(s) 450
AciI CCGC 8 cut(s) 231, 279, 293, 312, 320, 356, 487, 919
AcoI YGGCCR 2 cut(s) 570, 720
AcvI CACGTG 1 cut(s) 309
AfaI GTAC 3 cut(s) 731, 770, 887
AfiI CCNNNNNNNGG 4 cut(s) 134, 398, 572, 895
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 3 cut(s) 257, 339, 385
AjnI CCWGG 2 cut(s) 413, 516
AluBI AGCT 4 cut(s) 388, 481, 670, 808
AluI AGCT 4 cut(s) 388, 481, 670, 808
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 904
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 7 cut(s) 471, 489, 519, 528, 570, 720, 906
ApaI GGGCCC 1 cut(s) 493
ApeKI GCWGC 2 cut(s) 351, 788
ArsI GACNNNNNNTTYG 4 cut(s) 582, 614, 671, 703
AsiGI ACCGGT 1 cut(s) 283
AspLEI GCGC 2 cut(s) 411, 793
AspS9I GGNCC 6 cut(s) 314, 401, 489, 490, 520, 535
AsuC2I CCSGG 3 cut(s) 398, 399, 574
AsuHPI GGTGA 3 cut(s) 868, 908, 944
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 3 cut(s) 314, 401, 535
BaeGI GKGCMC 1 cut(s) 493
BanI GGYRCC 2 cut(s) 286, 830
BanII GRGCYC 3 cut(s) 483, 493, 939
BarI GAAGNNNNNNTAC 2 cut(s) 629, 661
BbrPI CACGTG 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 102, 507
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 338, 800
BccI CCATC 1 cut(s) 326
BceAI ACGGC 3 cut(s) 256, 458, 721
BcgI CGANNNNNNTGC 4 cut(s) 400, 434, 655, 689
BciT130I CCWGG 2 cut(s) 415, 518
BciVI GTATCC 1 cut(s) 573
BcnI CCSGG 3 cut(s) 398, 399, 574
BcoDI GTCTC 1 cut(s) 904
BfaI CTAG 3 cut(s) 59, 812, 858
BfmI CTRYAG 1 cut(s) 940
BfuI GTATCC 1 cut(s) 573
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 3 cut(s) 279, 352, 789
BlsI GCNGC 3 cut(s) 280, 353, 790
Bme1390I CCNGG 5 cut(s) 398, 399, 415, 518, 574
Bme18I GGWCC 3 cut(s) 314, 401, 535
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 6 cut(s) 314, 401, 489, 490, 520, 535
BmiI GGNNCC 4 cut(s) 288, 402, 491, 832
BmrFI CCNGG 5 cut(s) 398, 399, 415, 518, 574
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 2 cut(s) 169, 802
BmuI ACTGGG 1 cut(s) 718
BoxI GACNNNNGTC 1 cut(s) 399
BpiI GAAGAC 2 cut(s) 102, 507
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 3 cut(s) 398, 399, 574
Bsa29I ATCGAT 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 904
BsaJI CCNNGG 2 cut(s) 397, 531
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 398, 572, 895
Bse118I RCCGGY 2 cut(s) 283, 722
Bse1I ACTGG 1 cut(s) 713
Bse3DI GCAATG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 415, 518
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 397, 531
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 4 cut(s) 134, 398, 572, 895
BseMI GCAATG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 1 cut(s) 751
BseSI GKGCMC 1 cut(s) 493
BseX3I CGGCCG 1 cut(s) 720
BseXI GCAGC 2 cut(s) 338, 800
BseYI CCCAGC 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 723
BshFI GGCC 7 cut(s) 473, 491, 521, 530, 572, 722, 908
BshNI GGYRCC 2 cut(s) 286, 830
BshTI ACCGGT 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 345
BsiEI CGRYCG 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 7 cut(s) 284, 296, 317, 398, 573, 719, 723
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 4 cut(s) 134, 398, 572, 895
BsmAI GTCTC 1 cut(s) 904
BsmFI GGGAC 1 cut(s) 725
BsnI GGCC 7 cut(s) 473, 491, 521, 530, 572, 722, 908
Bso31I GGTCTC 1 cut(s) 904
BsoBI CYCGRG 1 cut(s) 397
Bsp120I GGGCCC 1 cut(s) 489
Bsp1286I GDGCHC 3 cut(s) 483, 493, 939
Bsp1407I TGTACA 1 cut(s) 729
Bsp143I GATC 1 cut(s) 657
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 8 cut(s) 231, 279, 293, 312, 320, 356, 487, 919
BspANI GGCC 7 cut(s) 473, 491, 521, 530, 572, 722, 908
BspDI ATCGAT 1 cut(s) 345
BspLI GGNNCC 4 cut(s) 288, 402, 491, 832
BspQI GCTCTTC 2 cut(s) 620, 699
BspT107I GGYRCC 2 cut(s) 286, 830
BspTNI GGTCTC 1 cut(s) 904
BsrDI GCAATG 1 cut(s) 404
BsrFI RCCGGY 2 cut(s) 283, 722
BsrGI TGTACA 1 cut(s) 729
BsrI ACTGG 1 cut(s) 713
BssAI RCCGGY 2 cut(s) 283, 722
BssECI CCNNGG 2 cut(s) 397, 531
BssMI GATC 1 cut(s) 657
BssNAI GTATAC 1 cut(s) 451
BssT1I CCWWGG 1 cut(s) 531
Bst1107I GTATAC 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 415, 518
Bst4CI ACNGT 5 cut(s) 247, 542, 557, 632, 944
Bst6I CTCTTC 3 cut(s) 620, 699, 929
BstAUI TGTACA 1 cut(s) 729
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 7 cut(s) 229, 233, 356, 420, 489, 528, 668
BstDEI CTNAG 3 cut(s) 129, 301, 903
BstDSI CCRYGG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 436
BstHHI GCGC 2 cut(s) 411, 793
BstKTI GATC 1 cut(s) 660
BstMAI GTCTC 1 cut(s) 904
BstMBI GATC 1 cut(s) 657
BstMCI CGRYCG 1 cut(s) 723
BstMWI GCNNNNNNNGC 4 cut(s) 144, 278, 415, 527
BstNI CCWGG 2 cut(s) 415, 518
BstNSI RCATGY 1 cut(s) 736
BstPAI GACNNNNGTC 1 cut(s) 399
BstSCI CCNGG 5 cut(s) 396, 397, 413, 516, 572
BstSFI CTRYAG 1 cut(s) 940
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 338, 800
BstV2I GAAGAC 2 cut(s) 102, 507
BstZ17I GTATAC 1 cut(s) 451
BstZI CGGCCG 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 345
BsuI GTATCC 1 cut(s) 573
BsuRI GGCC 7 cut(s) 473, 491, 521, 530, 572, 722, 908
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 538
Cac8I GCNNGC 7 cut(s) 229, 233, 356, 420, 489, 528, 668
CfoI GCGC 2 cut(s) 411, 793
Cfr10I RCCGGY 2 cut(s) 283, 722
Cfr13I GGNCC 6 cut(s) 314, 401, 489, 490, 520, 535
Cfr9I CCCGGG 1 cut(s) 397
ClaI ATCGAT 1 cut(s) 345
CpoI CGGWCCG 1 cut(s) 314
CseI GACGC 1 cut(s) 722
Csp6I GTAC 3 cut(s) 730, 769, 886
CspAI ACCGGT 1 cut(s) 283
CspCI CAANNNNNGTGG 6 cut(s) 358, 393, 590, 625, 808, 843
CspI CGGWCCG 1 cut(s) 314
CviAII CATG 5 cut(s) 484, 532, 661, 733, 883
CviQI GTAC 3 cut(s) 730, 769, 886
DdeI CTNAG 3 cut(s) 129, 301, 903
DpnI GATC 1 cut(s) 659
DpnII GATC 1 cut(s) 657
EaeI YGGCCR 2 cut(s) 570, 720
EagI CGGCCG 1 cut(s) 720
Eam1104I CTCTTC 3 cut(s) 620, 699, 929
EarI CTCTTC 3 cut(s) 620, 699, 929
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 481
EclXI CGGCCG 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 3 cut(s) 483, 493, 939
Eco31I GGTCTC 1 cut(s) 904
Eco47I GGWCC 3 cut(s) 314, 401, 535
Eco52I CGGCCG 1 cut(s) 720
Eco53kI GAGCTC 1 cut(s) 481
Eco72I CACGTG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 481
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 413, 516
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 3 cut(s) 483, 493, 939
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 5 cut(s) 487, 535, 664, 736, 886
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 725
FatI CATG 5 cut(s) 483, 531, 660, 732, 882
FauI CCCGC 3 cut(s) 224, 363, 480
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 279, 352, 789
FokI GGATG 1 cut(s) 443
FriOI GRGCYC 3 cut(s) 483, 493, 939
Fsp4HI GCNGC 3 cut(s) 279, 352, 789
FspBI CTAG 3 cut(s) 59, 812, 858
FspI TGCGCA 1 cut(s) 410
GlaI GCGC 2 cut(s) 410, 792
GluI GCNGC 3 cut(s) 279, 352, 789
GsaI CCCAGC 1 cut(s) 526
HaeIII GGCC 7 cut(s) 473, 491, 521, 530, 572, 722, 908
HapII CCGG 7 cut(s) 284, 296, 317, 398, 573, 719, 723
HgaI GACGC 1 cut(s) 722
HhaI GCGC 2 cut(s) 411, 793
Hin1II CATG 5 cut(s) 487, 535, 664, 736, 886
Hin6I GCGC 2 cut(s) 409, 791
HinP1I GCGC 2 cut(s) 409, 791
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 1 cut(s) 861
HpaII CCGG 7 cut(s) 284, 296, 317, 398, 573, 719, 723
HphI GGTGA 3 cut(s) 868, 908, 944
Hpy166II GTNNAC 3 cut(s) 451, 538, 601
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 6 cut(s) 176, 254, 428, 497, 703, 812
Hpy8I GTNNAC 3 cut(s) 451, 538, 601
Hpy99I CGWCG 4 cut(s) 479, 557, 680, 839
HpyAV CCTTC 3 cut(s) 73, 94, 503
HpyCH4III ACNGT 5 cut(s) 247, 542, 557, 632, 944
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 147, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 278, 415, 527
HpyF3I CTNAG 3 cut(s) 129, 301, 903
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 5 cut(s) 487, 535, 664, 736, 886
HspAI GCGC 2 cut(s) 409, 791
Kzo9I GATC 1 cut(s) 657
LguI GCTCTTC 2 cut(s) 620, 699
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 2 cut(s) 338, 800
LweI GCATC 2 cut(s) 169, 802
MaeI CTAG 3 cut(s) 59, 812, 858
MaeII ACGT 1 cut(s) 308
MalI GATC 1 cut(s) 659
MboI GATC 1 cut(s) 657
MboII GAAGA 9 cut(s) 79, 102, 512, 607, 610, 667, 686, 916, 919
MhlI GDGCHC 3 cut(s) 483, 493, 939
MluCI AATT 3 cut(s) 117, 191, 820
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 6 cut(s) 596, 769, 772, 827, 884, 932
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 881
MspI CCGG 7 cut(s) 284, 296, 317, 398, 573, 719, 723
MspR9I CCNGG 5 cut(s) 398, 399, 415, 518, 574
MvaI CCWGG 2 cut(s) 415, 518
MwoI GCNNNNNNNGC 4 cut(s) 144, 278, 415, 527
NciI CCSGG 3 cut(s) 398, 399, 574
NcoI CCATGG 1 cut(s) 531
NdeII GATC 1 cut(s) 657
NlaIII CATG 5 cut(s) 487, 535, 664, 736, 886
NlaIV GGNNCC 4 cut(s) 288, 402, 491, 832
NsbI TGCGCA 1 cut(s) 410
NspI RCATGY 1 cut(s) 736
PciSI GCTCTTC 2 cut(s) 620, 699
PcsI WCGNNNNNNNCGW 1 cut(s) 843
PfeI GAWTC 1 cut(s) 861
PflMI CCANNNNNTGG 1 cut(s) 895
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 3 cut(s) 280, 353, 790
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 309
PshAI GACNNNNGTC 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 413, 516
PspCI CACGTG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 2 cut(s) 413, 516
PspN4I GGNNCC 4 cut(s) 288, 402, 491, 832
PspOMI GGGCCC 1 cut(s) 489
PspPI GGNCC 6 cut(s) 314, 401, 489, 490, 520, 535
RsaI GTAC 3 cut(s) 731, 770, 887
RsaNI GTAC 3 cut(s) 730, 769, 886
RseI CAYNNNNRTG 1 cut(s) 881
Rsr2I CGGWCCG 1 cut(s) 314
RsrII CGGWCCG 1 cut(s) 314
SacI GAGCTC 1 cut(s) 483
SapI GCTCTTC 2 cut(s) 620, 699
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 3 cut(s) 279, 352, 789
Sau3AI GATC 1 cut(s) 657
Sau96I GGNCC 6 cut(s) 314, 401, 489, 490, 520, 535
ScrFI CCNGG 5 cut(s) 398, 399, 415, 518, 574
SduI GDGCHC 3 cut(s) 483, 493, 939
SfaNI GCATC 2 cut(s) 169, 802
SfcI CTRYAG 1 cut(s) 940
SfiI GGCCNNNNNGGCC 1 cut(s) 527
SgrAI CRCCGGYG 1 cut(s) 283
SinI GGWCC 3 cut(s) 314, 401, 535
SmaI CCCGGG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 881
Sse9I AATT 3 cut(s) 117, 191, 820
SsiI CCGC 8 cut(s) 231, 279, 293, 312, 320, 356, 487, 919
SspMI CTAG 3 cut(s) 59, 812, 858
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 5 cut(s) 396, 397, 413, 516, 572
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 5 cut(s) 247, 542, 557, 632, 944
TaiI ACGT 1 cut(s) 311
TaqI TCGA 4 cut(s) 345, 477, 588, 675
TasI AATT 3 cut(s) 117, 191, 820
TatI WGTACW 1 cut(s) 729
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 861
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 2 cut(s) 31, 545
TseI GCWGC 2 cut(s) 351, 788
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 1 cut(s) 255
TspMI CCCGGG 1 cut(s) 397
TspRI CASTG 2 cut(s) 31, 545
Van91I CCANNNNNTGG 1 cut(s) 895
VpaK11BI GGWCC 3 cut(s) 314, 401, 535
XagI CCTNNNNNAGG 1 cut(s) 132
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 1 cut(s) 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XmaI CCCGGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 3 cut(s) 59, 812, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.