Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451303.1

Orthogroup ID

OG0009218

Physical Location & Seq

Genomic Coordinates Forward (+)

46 .. 1335

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451303.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atggattctaatgtgggctcgcccaaaaagagcaacacaggtcttgttttcggcctcaccggtgctggggttgccgtgtttgttatgtccagtttgttggggttgtatttttggtatgacaggaggtggaggaacaaaagggttgttgggtcgagaatggattctggttttgatttggatgaaagagaggctaggattagagttagacccaacacgggttccatttggtttaaaattcaggaccttgagaaggctactaataacttttcgcagaagaatttcataggccgaggtggatttggtcttgtttacaagggtgttctatctgatggaactactgttgctgttaagaaagttatagagtctgattttcaaggggatgctgaattctgcaatgaggttgagattattagcaatttgaagcatcggaatctggttccgcttagagggtgttgtgtggttgagggggaggacaattatgaagagatgggaagtaataggtaccttgtatatgattacatgccgaatggaaatctagatgaccatctgtctctttctctgtctagtagtcagcgtggaattgaaaggaggcccctgacttggcctcaaaggaagggcataatcttggatgtggccaagggactagcttatttgcattatggagtgaagcctgcaatatatcacagagatattaaggcaacaaacatactactagatgtagatatgagagcaagagtggcagattttgggcttgcaaagcaaagtatggaaggccagtctcatctgacaactagagtggcagggactcacgggtacttggcccctgaatatgctctttacggacagctgaccgagaagagcgatgtttatagctttggagttgttgttttggagatcatgtgtgggagaaaagctcttgatctatcttccttgggatccccgcgagcattcttgatcacggattgggcttggtcattagtaaaatctgggaaagttgaagaggccttagacaaatcactgttgaaagagggggacagtgtcaattcaaatccaaagagcataatggaaagatttttgcttgttgggattttgtgtgctcatgtgatggttgctttacggcctagcattttggatgcactgaaaatgttggaaggggatattgaggttccaccgattccagataggccaatgcctcttggtcacccttcatgttatggcgacggcaatactttcagcatatcaccatctttgagcgggccaagattacatagtggagacatgctcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

429

Amino Acids

47.53

Weight (kDa)

7.63

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11050
fragaria_vesca	FvH4_5g29100 FvH4_5g29100 FvH4_5g29100
malus_domestica	MD08G1235700.v1.1 MD15G1427400.v1.1
prunus_persica	Prupe.1G571200_v2.0.a1 Prupe.1G571200_v2.0.a1
pyrus_communis	pycom08g20370 pycom15g37890
rosa_chinensis	RchiOBHm_Chr7g0221741
rosa_laevigata	RLG00000002134
rosa_multiflora	Rmu_co8451303.1_g000001 Rmu_sc0003311.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238080
rosa_rugosa	Rorug07G0203100
rosa_samantha	Rh7AG344000 Rh7BG334500 Rh7CG361400 Rh7DG341800
rosa_wichuraiana	Rw0G003240 Rw7G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	501
AccB1I	GGYRCC	1 cut(s)	501
AccBSI	CCGCTC	1 cut(s)	1254
AccII	CGCG	1 cut(s)	943
AciI	CCGC	3 cut(s)	440, 941, 1254
AclWI	GGATC	2 cut(s)	930, 943
AcoI	YGGCCR	1 cut(s)	633
AcsI	RAATTY	3 cut(s)	234, 277, 386
AfaI	GTAC	2 cut(s)	503, 815
AfiI	CCNNNNNNNGG	5 cut(s)	66, 215, 250, 446, 600
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	6 cut(s)	374, 421, 584, 998, 1024, 1047
AhdI	GACNNNNNGTC	1 cut(s)	547
AluBI	AGCT	4 cut(s)	647, 847, 873, 914
AluI	AGCT	4 cut(s)	647, 847, 873, 914
Alw21I	GWGCWC	1 cut(s)	1099
Alw26I	GTCTC	3 cut(s)	555, 783, 1269
AlwI	GGATC	2 cut(s)	930, 943
ApoI	RAATTY	3 cut(s)	234, 277, 386
AsiGI	ACCGGT	1 cut(s)	59
Asp700I	GAANNNNTTC	2 cut(s)	160, 278
Asp718I	GGTACC	1 cut(s)	501
AspS9I	GGNCC	4 cut(s)	241, 591, 820, 1256
AsuHPI	GGTGA	3 cut(s)	49, 1193, 1233
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	501
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	1099
BccI	CCATC	5 cut(s)	323, 481, 552, 1099, 1252
BceAI	ACGGC	3 cut(s)	59, 1133, 1237
BclI	TGATCA	1 cut(s)	954
BcoDI	GTCTC	3 cut(s)	555, 783, 1269
BfaI	CTAG	7 cut(s)	192, 536, 564, 644, 713, 792, 1122
Bme18I	GGWCC	1 cut(s)	241
BmeRI	GACNNNNNGTC	1 cut(s)	547
BmgT120I	GGNCC	4 cut(s)	241, 591, 820, 1256
BmiI	GGNNCC	7 cut(s)	220, 438, 503, 593, 822, 937, 1167
BmsI	GCATC	3 cut(s)	370, 433, 1123
BplI	GAGNNNNNCTC	3 cut(s)	898, 930, 1266
Bpu10I	CCTNAGC	1 cut(s)	1283
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	3 cut(s)	289, 636, 930
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	4 cut(s)	870, 884, 900, 914
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 215, 250, 446, 600
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	90, 775
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	289, 636, 930
BseGI	GGATG	4 cut(s)	184, 385, 634, 1138
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	5 cut(s)	66, 215, 250, 446, 600
BseMI	GCAATG	1 cut(s)	400
BseNI	ACTGG	2 cut(s)	90, 775
BseYI	CCCAGC	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	943
BshNI	GGYRCC	1 cut(s)	501
BshTI	ACCGGT	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	1099
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	3 cut(s)	654, 817, 1046
BslI	CCNNNNNNNGG	5 cut(s)	66, 215, 250, 446, 600
BsmAI	GTCTC	3 cut(s)	555, 783, 1269
BsmFI	GGGAC	3 cut(s)	654, 817, 1046
BsmI	GAATGC	1 cut(s)	947
Bsp1286I	GDGCHC	2 cut(s)	20, 1099
Bsp143I	GATC	4 cut(s)	894, 919, 935, 954
BspACI	CCGC	3 cut(s)	440, 941, 1254
BspFNI	CGCG	1 cut(s)	943
BspLI	GGNNCC	7 cut(s)	220, 438, 503, 593, 822, 937, 1167
BspPI	GGATC	2 cut(s)	930, 943
BspQI	GCTCTTC	1 cut(s)	851
BspT107I	GGYRCC	1 cut(s)	501
BsrBI	CCGCTC	1 cut(s)	1254
BsrDI	GCAATG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	90, 775
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	289, 636, 930
BssMI	GATC	4 cut(s)	894, 919, 935, 954
BssT1I	CCWWGG	2 cut(s)	636, 930
Bst4CI	ACNGT	3 cut(s)	340, 1020, 1037
Bst6I	CTCTTC	3 cut(s)	477, 851, 993
BstC8I	GCNNGC	5 cut(s)	20, 672, 753, 945, 1256
BstDEI	CTNAG	3 cut(s)	443, 1006, 1283
BstEII	GGTNACC	1 cut(s)	1199
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	184, 385, 634, 1138
BstFNI	CGCG	1 cut(s)	943
BstKTI	GATC	4 cut(s)	897, 922, 938, 957
BstMAI	GTCTC	3 cut(s)	555, 783, 1269
BstMBI	GATC	4 cut(s)	894, 919, 935, 954
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 737, 757
BstNSI	RCATGY	2 cut(s)	523, 1282
BstPI	GGTNACC	1 cut(s)	1199
BstUI	CGCG	1 cut(s)	943
BstX2I	RGATCY	1 cut(s)	935
BstXI	CCANNNNNNTGG	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	935
BtgZI	GCGATG	1 cut(s)	876
BtsCI	GGATG	4 cut(s)	184, 385, 634, 1138
BtsIMutI	CAGTG	3 cut(s)	1016, 1042, 1136
Cac8I	GCNNGC	5 cut(s)	20, 672, 753, 945, 1256
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	4 cut(s)	241, 591, 820, 1256
Csp6I	GTAC	2 cut(s)	502, 814
CspAI	ACCGGT	1 cut(s)	59
CspCI	CAANNNNNGTGG	2 cut(s)	777, 812
CviAII	CATG	5 cut(s)	520, 898, 1100, 1209, 1279
CviQI	GTAC	2 cut(s)	502, 814
DdeI	CTNAG	3 cut(s)	443, 1006, 1283
DpnI	GATC	4 cut(s)	896, 921, 937, 956
DpnII	GATC	4 cut(s)	894, 919, 935, 954
DraI	TTTAAA	1 cut(s)	232
DriI	GACNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	633
Eam1104I	CTCTTC	3 cut(s)	477, 851, 993
Eam1105I	GACNNNNNGTC	1 cut(s)	547
EarI	CTCTTC	3 cut(s)	477, 851, 993
Eco130I	CCWWGG	2 cut(s)	636, 930
Eco147I	AGGCCT	1 cut(s)	1004
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	1199
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	2 cut(s)	241, 591
EcoO65I	GGTNACC	1 cut(s)	1199
EcoRI	GAATTC	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	636, 930
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	636, 930
FaeI	CATG	5 cut(s)	523, 901, 1103, 1212, 1282
FaqI	GGGAC	3 cut(s)	654, 817, 1046
FatI	CATG	5 cut(s)	519, 897, 1099, 1208, 1278
FauI	CCCGC	2 cut(s)	948, 1247
FbaI	TGATCA	1 cut(s)	954
FokI	GGATG	4 cut(s)	191, 392, 641, 1145
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	7 cut(s)	192, 536, 564, 644, 713, 792, 1122
GsaI	CCCAGC	1 cut(s)	69
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	5 cut(s)	523, 901, 1103, 1212, 1282
HinfI	GANTC	6 cut(s)	5, 161, 362, 430, 805, 1174
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	3 cut(s)	49, 1193, 1233
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	328, 367, 429, 786
Hpy188III	TCNNGA	6 cut(s)	153, 239, 536, 917, 952, 1178
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	1223
HpyAV	CCTTC	5 cut(s)	244, 607, 764, 1145, 1215
HpyCH4III	ACNGT	3 cut(s)	340, 1020, 1037
HpyCH4V	TGCA	5 cut(s)	393, 655, 674, 755, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 737, 757
HpyF3I	CTNAG	3 cut(s)	443, 1006, 1283
Hsp92II	CATG	5 cut(s)	523, 901, 1103, 1212, 1282
KpnI	GGTACC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	954
Kzo9I	GATC	4 cut(s)	894, 919, 935, 954
LguI	GCTCTTC	1 cut(s)	851
LweI	GCATC	3 cut(s)	370, 433, 1123
MaeI	CTAG	7 cut(s)	192, 536, 564, 644, 713, 792, 1122
MaeIII	GTNAC	1 cut(s)	1199
MalI	GATC	4 cut(s)	896, 921, 937, 956
MbiI	CCGCTC	1 cut(s)	1254
MboI	GATC	4 cut(s)	894, 919, 935, 954
MboII	GAAGA	5 cut(s)	286, 494, 868, 918, 1010
MflI	RGATCY	1 cut(s)	935
MhlI	GDGCHC	2 cut(s)	20, 1099
MlsI	TGGCCA	1 cut(s)	635
MluCI	AATT	7 cut(s)	234, 277, 386, 415, 475, 579, 1042
MluNI	TGGCCA	1 cut(s)	635
MlyI	GAGTC	2 cut(s)	371, 799
MmeI	TCCRAC	1 cut(s)	1128
Mox20I	TGGCCA	1 cut(s)	635
MroXI	GAANNNNTTC	2 cut(s)	160, 278
MscI	TGGCCA	1 cut(s)	635
MseI	TTAA	3 cut(s)	231, 348, 693
Msp20I	TGGCCA	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	947
MvnI	CGCG	1 cut(s)	943
MwoI	GCNNNNNNNGC	3 cut(s)	71, 737, 757
NdeII	GATC	4 cut(s)	894, 919, 935, 954
NlaIII	CATG	5 cut(s)	523, 901, 1103, 1212, 1282
NlaIV	GGNNCC	7 cut(s)	220, 438, 503, 593, 822, 937, 1167
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	1199
NspI	RCATGY	2 cut(s)	523, 1282
PceI	AGGCCT	1 cut(s)	1004
PciSI	GCTCTTC	1 cut(s)	851
PctI	GAATGC	1 cut(s)	947
PdmI	GAANNNNTTC	2 cut(s)	160, 278
PfeI	GAWTC	4 cut(s)	5, 161, 430, 1174
PflFI	GACNNNGTC	1 cut(s)	1037
PinAI	ACCGGT	1 cut(s)	59
PleI	GAGTC	2 cut(s)	370, 799
PpsI	GAGTC	2 cut(s)	370, 799
PpuMI	RGGWCCY	1 cut(s)	241
Psp5II	RGGWCCY	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	1199
PspFI	CCCAGC	1 cut(s)	65
PspN4I	GGNNCC	7 cut(s)	220, 438, 503, 593, 822, 937, 1167
PspPI	GGNCC	4 cut(s)	241, 591, 820, 1256
PspPPI	RGGWCCY	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	935
PsyI	GACNNNGTC	1 cut(s)	1037
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	2 cut(s)	503, 815
RsaNI	GTAC	2 cut(s)	502, 814
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	3 cut(s)	231, 348, 693
Sau3AI	GATC	4 cut(s)	894, 919, 935, 954
Sau96I	GGNCC	4 cut(s)	241, 591, 820, 1256
SchI	GAGTC	2 cut(s)	371, 799
SduI	GDGCHC	2 cut(s)	20, 1099
SfaNI	GCATC	3 cut(s)	370, 433, 1123
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	7 cut(s)	234, 277, 386, 415, 475, 579, 1042
SseBI	AGGCCT	1 cut(s)	1004
SsiI	CCGC	3 cut(s)	440, 941, 1254
SspMI	CTAG	7 cut(s)	192, 536, 564, 644, 713, 792, 1122
StuI	AGGCCT	1 cut(s)	1004
StyI	CCWWGG	2 cut(s)	636, 930
TaaI	ACNGT	3 cut(s)	340, 1020, 1037
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	866
TasI	AATT	7 cut(s)	234, 277, 386, 415, 475, 579, 1042
TfiI	GAWTC	4 cut(s)	5, 161, 430, 1174
Tru1I	TTAA	3 cut(s)	231, 348, 693
Tru9I	TTAA	3 cut(s)	231, 348, 693
TscAI	CASTG	3 cut(s)	1023, 1042, 1143
TseFI	GTSAC	1 cut(s)	1199
Tsp45I	GTSAC	1 cut(s)	1199
TspDTI	ATGAA	4 cut(s)	195, 271, 495, 1197
TspGWI	ACGGA	2 cut(s)	855, 974
TspRI	CASTG	3 cut(s)	1023, 1042, 1143
Tth111I	GACNNNGTC	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	241
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	3 cut(s)	234, 277, 386
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	2 cut(s)	523, 1282
XmnI	GAANNNNTTC	2 cut(s)	160, 278
XspI	CTAG	7 cut(s)	192, 536, 564, 644, 713, 792, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.