Rroxscaffold_3G00238080

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
26210844 .. 26212819
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238080.1

Sequence Viewer

Length: 1836 bp
ATGATGAAGCTAGGTGGGTTTCTGTTGTTTGTGTCTCTCTCCCCTACAGCTCCCTCTCTCATCTCCACCCAATCCACAAACTCAACCAACACAACCACATCATGCCCCATGGATCTGAGCTATGTCCTTAGAATCCCCTTCAACTCCTCCTCATGCCAAAACTTCCAAGGCCCTCCCAAAACCCCACAAAGGGACATCACCCAGATCCCATGCTGCCAAACCCTCCTGTCTCTCTATGGAATAGCCCTTGCCCAACACCTCAAAGAAACCACTCTGTTTCAACTCCCCAATCTACCCACTTCAAACTCCTGCCTCCAGAATTTCCAGTCCAAGCTCACCTCCCTCTCCCTCCCTTCCACTTTGGTCTCCTACTGCTTTGACCCTTTACAGTTTGTCATCACCCCCAACATCTGTGCCCATATTGAGTCCTCTCAAGACTGGCTCTCCAAGCTCAATGGCACCACTGCTCTGGATTCTTCCTGCAGACCAGACCTCATTGATCTCTCATCCTGCGATGCTTGCGTGGCCGCCGGCTTCAAGGTTCAGCAACAGTTGATCGCCGTTGATGGTAACTCTTCTCACTCTAGAGATTGTTGGTACTTTACAATTCTTTATGCTGCTGGTATCATCAATGAGTTTGGACCTGAGAGCAATGGTGCTGTGACTTGTATTTTTGGTCTGTCAATGAATTCTAATGTGGGCTCGCCCAAAAAGAGCAACACAGCTCTTGTTTTCGGCCTCACCCGGAGGTGGAGGAACAAAAGGGTTGTTGGGTCGAGAATGGATTCTGGTTTTGATTTGGATGAAAGAGAGGCTAGGATTAGAGTTAGACCCAACACAGGTTCCATTTGGTTTAAAATTCAGGACCTTGAGAAGGCTACTAATAACTTTTCGCAGAAGAATTTTATAGGCCGAGGTGGATTTGGTCTTGTTTACAAGGGTGTTCTATCTGATGGAACTACTGTTGCTGTTAAGAAAGTTATAGAGTCTGATTTTCAAGGGGATGCTGAATTCTGCAATGAGGTTGAGATTATTAGCAATTTGAAGCATCGGAATCTGGTTCCGCTTAGAGGCTGTTGTGTGGTTGAGGGGGAGGACAATTATGAAGAGAGGGGAAGTAACAGGTACCTTGTATATGATTACATGCCGAATGGAAATCTAGATGACCATCTATTTCTTTCTCTGTCTAGTAGTCAGCGTGGAATTGAAAGGAGGCCCTTGACTTGGCCTCAAAGGAAGGGCATAATCTTGGATGTGGCCAAGGGACTAGCTTATTTGCATTATGGAGTGAAGCCTGCAATATATCACAGAGATATTAAGGCAACAAACATACTACTAGACGTAGATATGAGAGCAAGAGTGGCAGATTTTGGGCTCGCGAAGCAAAGTATGGAAGGCCAGTCTCATCTAACAACTAGAGTGGCAGGGACTCACGGTTATTTGGCCCCTGAATATGCTCTTTATGGACAGCTGACCGAGAAGAGCGATGTTTATAGCTTTGGAGTTGTTGTTTTGGAGATCATGTTAAAATCTGGGAAAGTTGAAGAGGCTTTAGACAAATCACTGTTGAAAGAGGGGGACAGTGTCAATTCAAATCCAAAGAGCATAATGGAAAGATTTTTGCTTGTTGGGATTTTGTGTGCTCATGTAATGGTTGCTTTACGGCCCAGCATTTTGGATGCACTGAAAATGTTGGAAGGGGATATTGAGGTGCCACCAATTCCAGATAGGCCAATGCCTCTTGGTCACCCTTCATGTTATGGCGACGGTAATACTTTCAGCATATCACCAGCTTTGAGCGGGCCAAGATTACATAGTGGAGACATGCTCAGGTAA

Protein Analysis

611

Amino Acids

67.27

Weight (kDa)

6.85

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 30 - 198 7.6e-41 SPARK
Pkinase PF00069 298 - 515 5.3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 300 - 520 7.4e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1125
AccB1I GGYRCC 3 cut(s) 458, 1125, 1711
AccBSI CCGCTC 1 cut(s) 1800
AccII CGCG 1 cut(s) 1379
AciI CCGC 3 cut(s) 528, 1064, 1800
AclWI GGATC 2 cut(s) 120, 199
AcoI YGGCCR 2 cut(s) 525, 1257
AcsI RAATTY 5 cut(s) 319, 688, 858, 901, 1010
AfaI GTAC 2 cut(s) 599, 1127
AfiI CCNNNNNNNGG 7 cut(s) 189, 190, 750, 839, 874, 1070, 1224
Alw21I GWGCWC 1 cut(s) 1645
Alw26I GTCTC 5 cut(s) 39, 234, 370, 1407, 1815
AlwI GGATC 2 cut(s) 120, 199
ApeKI GCWGC 2 cut(s) 213, 617
ApoI RAATTY 5 cut(s) 319, 688, 858, 901, 1010
Asp700I GAANNNNTTC 1 cut(s) 784
Asp718I GGTACC 1 cut(s) 1125
AspS9I GGNCC 7 cut(s) 170, 641, 865, 1215, 1444, 1665, 1802
AsuC2I CCSGG 1 cut(s) 745
AsuHPI GGTGA 6 cut(s) 190, 328, 391, 733, 1739, 1779
AvaII GGWCC 2 cut(s) 641, 865
BaeGI GKGCMC 1 cut(s) 418
BalI TGGCCA 1 cut(s) 1259
BanI GGYRCC 3 cut(s) 458, 1125, 1711
BanII GRGCYC 2 cut(s) 704, 1377
Bbv12I GWGCWC 1 cut(s) 1645
BbvI GCAGC 2 cut(s) 200, 604
BccI CCATC 3 cut(s) 560, 947, 1176
BceAI ACGGC 2 cut(s) 545, 1679
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 5 cut(s) 39, 234, 370, 1407, 1815
BfaI CTAG 8 cut(s) 11, 585, 816, 1160, 1188, 1268, 1337, 1416
BfmI CTRYAG 2 cut(s) 45, 481
BisI GCNGC 3 cut(s) 214, 528, 618
BlsI GCNGC 3 cut(s) 215, 529, 619
Bme1390I CCNGG 1 cut(s) 745
Bme18I GGWCC 2 cut(s) 641, 865
BmgT120I GGNCC 7 cut(s) 170, 641, 865, 1215, 1444, 1665, 1802
BmiI GGNNCC 6 cut(s) 460, 844, 1062, 1127, 1446, 1713
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 4 cut(s) 505, 994, 1057, 1669
BplI GAGNNNNNCTC 1 cut(s) 1812
BpmI CTGGAG 1 cut(s) 299
Bpu10I CCTNAGC 1 cut(s) 1829
BpuEI CTTGAG 2 cut(s) 417, 890
BpuMI CCSGG 1 cut(s) 745
BsaBI GATNNNNATC 1 cut(s) 1167
BsaI GGTCTC 1 cut(s) 370
BsaJI CCNNGG 4 cut(s) 108, 166, 913, 1260
BsaXI ACNNNNNCTCC 6 cut(s) 428, 458, 1494, 1508, 1524, 1538
Bsc4I CCNNNNNNNGG 7 cut(s) 189, 190, 750, 839, 874, 1070, 1224
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 325, 443, 1399
Bse3DI GCAATG 2 cut(s) 658, 1024
Bse8I GATNNNNATC 1 cut(s) 1167
BseDI CCNNGG 4 cut(s) 108, 166, 913, 1260
BseGI GGATG 5 cut(s) 506, 808, 1009, 1258, 1684
BseJI GATNNNNATC 1 cut(s) 1167
BseLI CCNNNNNNNGG 7 cut(s) 189, 190, 750, 839, 874, 1070, 1224
BseMI GCAATG 2 cut(s) 658, 1024
BseMII CTCAG 2 cut(s) 107, 636
BseNI ACTGG 3 cut(s) 325, 443, 1399
BseRI GAGGAG 2 cut(s) 136, 139
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 2 cut(s) 200, 604
BseYI CCCAGC 1 cut(s) 1667
Bsh1236I CGCG 1 cut(s) 1379
BshNI GGYRCC 3 cut(s) 458, 1125, 1711
BsiHKAI GWGCWC 1 cut(s) 1645
BsiSI CCGG 2 cut(s) 531, 745
BslFI GGGAC 4 cut(s) 206, 1278, 1441, 1592
BslI CCNNNNNNNGG 7 cut(s) 189, 190, 750, 839, 874, 1070, 1224
BsmAI GTCTC 5 cut(s) 39, 234, 370, 1407, 1815
BsmFI GGGAC 4 cut(s) 206, 1278, 1441, 1592
Bso31I GGTCTC 1 cut(s) 370
Bsp1286I GDGCHC 4 cut(s) 418, 704, 1377, 1645
Bsp143I GATC 5 cut(s) 112, 204, 499, 555, 1518
Bsp19I CCATGG 1 cut(s) 108
Bsp68I TCGCGA 1 cut(s) 1379
BspACI CCGC 3 cut(s) 528, 1064, 1800
BspCNI CTCAG 2 cut(s) 108, 637
BspFNI CGCG 1 cut(s) 1379
BspLI GGNNCC 6 cut(s) 460, 844, 1062, 1127, 1446, 1713
BspMAI CTGCAG 1 cut(s) 485
BspPI GGATC 2 cut(s) 120, 199
BspQI GCTCTTC 1 cut(s) 1475
BspT107I GGYRCC 3 cut(s) 458, 1125, 1711
BspTNI GGTCTC 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 1800
BsrDI GCAATG 2 cut(s) 658, 1024
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 3 cut(s) 325, 443, 1399
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 108, 166, 913, 1260
BssMI GATC 5 cut(s) 112, 204, 499, 555, 1518
BssT1I CCWWGG 3 cut(s) 108, 166, 1260
Bst4CI ACNGT 7 cut(s) 390, 552, 964, 1436, 1566, 1583, 1769
Bst6I CTCTTC 4 cut(s) 580, 1101, 1475, 1539
BstC8I GCNNGC 6 cut(s) 520, 532, 704, 1296, 1377, 1802
BstDEI CTNAG 5 cut(s) 116, 128, 645, 1067, 1829
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 1745
BstENI CCTNNNNNAGG 1 cut(s) 872
BstF5I GGATG 5 cut(s) 506, 808, 1009, 1258, 1684
BstFNI CGCG 1 cut(s) 1379
BstKTI GATC 5 cut(s) 115, 207, 502, 558, 1521
BstMAI GTCTC 5 cut(s) 39, 234, 370, 1407, 1815
BstMBI GATC 5 cut(s) 112, 204, 499, 555, 1518
BstMWI GCNNNNNNNGC 5 cut(s) 448, 519, 524, 1361, 1381
BstNSI RCATGY 2 cut(s) 1147, 1828
BstPI GGTNACC 1 cut(s) 1745
BstSCI CCNGG 1 cut(s) 743
BstSFI CTRYAG 2 cut(s) 45, 481
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 1379
BstV1I GCAGC 2 cut(s) 200, 604
BstX2I RGATCY 2 cut(s) 112, 204
BstXI CCANNNNNNTGG 2 cut(s) 469, 1675
BstYI RGATCY 2 cut(s) 112, 204
BtgI CCRYGG 1 cut(s) 108
BtgZI GCGATG 2 cut(s) 528, 1500
BtsCI GGATG 5 cut(s) 506, 808, 1009, 1258, 1684
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 4 cut(s) 462, 1562, 1588, 1682
BtuMI TCGCGA 1 cut(s) 1379
Cac8I GCNNGC 6 cut(s) 520, 532, 704, 1296, 1377, 1802
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 7 cut(s) 170, 641, 865, 1215, 1444, 1665, 1802
Csp6I GTAC 2 cut(s) 598, 1126
CspCI CAANNNNNGTGG 2 cut(s) 1401, 1436
CviAII CATG 9 cut(s) 102, 109, 153, 210, 1144, 1522, 1646, 1755, 1825
CviQI GTAC 2 cut(s) 598, 1126
DdeI CTNAG 5 cut(s) 116, 128, 645, 1067, 1829
DpnI GATC 5 cut(s) 114, 206, 501, 557, 1520
DpnII GATC 5 cut(s) 112, 204, 499, 555, 1518
DraI TTTAAA 1 cut(s) 856
EaeI YGGCCR 2 cut(s) 525, 1257
Eam1104I CTCTTC 4 cut(s) 580, 1101, 1475, 1539
EarI CTCTTC 4 cut(s) 580, 1101, 1475, 1539
Eco130I CCWWGG 3 cut(s) 108, 166, 1260
Eco24I GRGCYC 2 cut(s) 704, 1377
Eco31I GGTCTC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 641, 865
Eco91I GGTNACC 1 cut(s) 1745
EcoNI CCTNNNNNAGG 1 cut(s) 872
EcoO109I RGGNCCY 3 cut(s) 170, 865, 1215
EcoO65I GGTNACC 1 cut(s) 1745
EcoRI GAATTC 2 cut(s) 688, 1010
EcoT14I CCWWGG 3 cut(s) 108, 166, 1260
EcoT38I GRGCYC 2 cut(s) 704, 1377
ErhI CCWWGG 3 cut(s) 108, 166, 1260
FaeI CATG 9 cut(s) 105, 112, 156, 213, 1147, 1525, 1649, 1758, 1828
FaqI GGGAC 4 cut(s) 206, 1278, 1441, 1592
FatI CATG 9 cut(s) 101, 108, 152, 209, 1143, 1521, 1645, 1754, 1824
FauI CCCGC 1 cut(s) 1793
Fnu4HI GCNGC 3 cut(s) 214, 528, 618
FokI GGATG 5 cut(s) 493, 815, 1016, 1265, 1691
FriOI GRGCYC 2 cut(s) 704, 1377
Fsp4HI GCNGC 3 cut(s) 214, 528, 618
FspBI CTAG 8 cut(s) 11, 585, 816, 1160, 1188, 1268, 1337, 1416
GluI GCNGC 3 cut(s) 214, 528, 618
GsaI CCCAGC 1 cut(s) 1671
GsuI CTGGAG 1 cut(s) 299
HapII CCGG 2 cut(s) 531, 745
Hin1II CATG 9 cut(s) 105, 112, 156, 213, 1147, 1525, 1649, 1758, 1828
HinfI GANTC 7 cut(s) 132, 425, 473, 785, 986, 1054, 1429
HpaII CCGG 2 cut(s) 531, 745
HphI GGTGA 6 cut(s) 190, 328, 391, 733, 1739, 1779
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 4 cut(s) 117, 952, 991, 1053
Hpy188III TCNNGA 9 cut(s) 316, 434, 470, 585, 777, 863, 1160, 1378, 1724
Hpy8I GTNNAC 1 cut(s) 934
Hpy99I CGWCG 1 cut(s) 1769
HpyAV CCTTC 7 cut(s) 148, 363, 868, 1231, 1388, 1691, 1761
HpyCH4III ACNGT 7 cut(s) 390, 552, 964, 1436, 1566, 1583, 1769
HpyCH4IV ACGT 1 cut(s) 1341
HpyCH4V TGCA 5 cut(s) 483, 1017, 1279, 1298, 1682
HpyF10VI GCNNNNNNNGC 5 cut(s) 448, 519, 524, 1361, 1381
HpyF3I CTNAG 5 cut(s) 116, 128, 645, 1067, 1829
HpySE526I ACGT 1 cut(s) 1341
Hsp92II CATG 9 cut(s) 105, 112, 156, 213, 1147, 1525, 1649, 1758, 1828
KpnI GGTACC 1 cut(s) 1129
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
Kzo9I GATC 5 cut(s) 112, 204, 499, 555, 1518
LguI GCTCTTC 1 cut(s) 1475
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 2 cut(s) 200, 604
LweI GCATC 4 cut(s) 505, 994, 1057, 1669
MaeI CTAG 8 cut(s) 11, 585, 816, 1160, 1188, 1268, 1337, 1416
MaeII ACGT 1 cut(s) 1341
MaeIII GTNAC 4 cut(s) 569, 661, 1118, 1745
MalI GATC 5 cut(s) 114, 206, 501, 557, 1520
MbiI CCGCTC 1 cut(s) 1800
MboI GATC 5 cut(s) 112, 204, 499, 555, 1518
MboII GAAGA 6 cut(s) 468, 567, 910, 1118, 1492, 1556
MflI RGATCY 2 cut(s) 112, 204
MhlI GDGCHC 4 cut(s) 418, 704, 1377, 1645
MlsI TGGCCA 1 cut(s) 1259
MluNI TGGCCA 1 cut(s) 1259
MlyI GAGTC 3 cut(s) 434, 995, 1423
MmeI TCCRAC 1 cut(s) 1674
Mox20I TGGCCA 1 cut(s) 1259
MroNI GCCGGC 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 784
MscI TGGCCA 1 cut(s) 1259
MseI TTAA 4 cut(s) 855, 972, 1317, 1526
Msp20I TGGCCA 1 cut(s) 1259
MspA1I CMGCKG 1 cut(s) 1471
MspI CCGG 2 cut(s) 531, 745
MspR9I CCNGG 1 cut(s) 745
MvnI CGCG 1 cut(s) 1379
MwoI GCNNNNNNNGC 5 cut(s) 448, 519, 524, 1361, 1381
NaeI GCCGGC 1 cut(s) 532
NciI CCSGG 1 cut(s) 745
NcoI CCATGG 1 cut(s) 108
NdeII GATC 5 cut(s) 112, 204, 499, 555, 1518
NgoMIV GCCGGC 1 cut(s) 530
NlaIII CATG 9 cut(s) 105, 112, 156, 213, 1147, 1525, 1649, 1758, 1828
NlaIV GGNNCC 6 cut(s) 460, 844, 1062, 1127, 1446, 1713
NmeAIII GCCGAG 1 cut(s) 938
NmuCI GTSAC 2 cut(s) 661, 1745
NruI TCGCGA 1 cut(s) 1379
NspI RCATGY 2 cut(s) 1147, 1828
PciSI GCTCTTC 1 cut(s) 1475
PdiI GCCGGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 4 cut(s) 132, 473, 785, 1054
PflFI GACNNNGTC 1 cut(s) 1583
PkrI GCNGC 3 cut(s) 215, 529, 619
PleI GAGTC 3 cut(s) 433, 994, 1423
PpsI GAGTC 3 cut(s) 433, 994, 1423
PpuMI RGGWCCY 1 cut(s) 865
Psp5II RGGWCCY 1 cut(s) 865
PspEI GGTNACC 1 cut(s) 1745
PspFI CCCAGC 1 cut(s) 1667
PspN4I GGNNCC 6 cut(s) 460, 844, 1062, 1127, 1446, 1713
PspPI GGNCC 7 cut(s) 170, 641, 865, 1215, 1444, 1665, 1802
PspPPI RGGWCCY 1 cut(s) 865
PstI CTGCAG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 112, 204
PsyI GACNNNGTC 1 cut(s) 1583
PvuII CAGCTG 1 cut(s) 1471
RruI TCGCGA 1 cut(s) 1379
RsaI GTAC 2 cut(s) 599, 1127
RsaNI GTAC 2 cut(s) 598, 1126
SapI GCTCTTC 1 cut(s) 1475
SaqAI TTAA 4 cut(s) 855, 972, 1317, 1526
SatI GCNGC 3 cut(s) 214, 528, 618
Sau3AI GATC 5 cut(s) 112, 204, 499, 555, 1518
Sau96I GGNCC 7 cut(s) 170, 641, 865, 1215, 1444, 1665, 1802
SchI GAGTC 3 cut(s) 434, 995, 1423
ScrFI CCNGG 1 cut(s) 745
SduI GDGCHC 4 cut(s) 418, 704, 1377, 1645
SfaNI GCATC 4 cut(s) 505, 994, 1057, 1669
SfcI CTRYAG 2 cut(s) 45, 481
SinI GGWCC 2 cut(s) 641, 865
SmlI CTYRAG 2 cut(s) 432, 869
SmoI CTYRAG 2 cut(s) 432, 869
SsiI CCGC 3 cut(s) 528, 1064, 1800
SspMI CTAG 8 cut(s) 11, 585, 816, 1160, 1188, 1268, 1337, 1416
StyD4I CCNGG 1 cut(s) 743
StyI CCWWGG 3 cut(s) 108, 166, 1260
TaaI ACNGT 7 cut(s) 390, 552, 964, 1436, 1566, 1583, 1769
TaiI ACGT 1 cut(s) 1344
TaqI TCGA 1 cut(s) 776
TaqII GACCGA 1 cut(s) 1490
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 4 cut(s) 132, 473, 785, 1054
Tru1I TTAA 4 cut(s) 855, 972, 1317, 1526
Tru9I TTAA 4 cut(s) 855, 972, 1317, 1526
TscAI CASTG 4 cut(s) 469, 1569, 1588, 1689
TseFI GTSAC 2 cut(s) 661, 1745
TseI GCWGC 2 cut(s) 213, 617
Tsp45I GTSAC 2 cut(s) 661, 1745
TspDTI ATGAA 5 cut(s) 20, 701, 819, 1119, 1743
TspRI CASTG 4 cut(s) 469, 1569, 1588, 1689
Tth111I GACNNNGTC 1 cut(s) 1583
VpaK11BI GGWCC 2 cut(s) 641, 865
XagI CCTNNNNNAGG 1 cut(s) 872
XapI RAATTY 5 cut(s) 319, 688, 858, 901, 1010
XbaI TCTAGA 2 cut(s) 584, 1159
XceI RCATGY 2 cut(s) 1147, 1828
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 8 cut(s) 11, 585, 816, 1160, 1188, 1268, 1337, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.