Rorug07G0203100

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009218
Physical Location & Seq
Reverse (-)
17775813 .. 17779959
4147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0203100.1

Sequence Viewer

Length: 1338 bp
ATGAAACTTAGGGTTGTACATGGAGTCCCCATATTCCCTCACTCCACACACCTCAATCACCTCCACAACCAGCGTCGCTGCTTCACTTCTCTTCTGAAGAAACTCCAAAAGACCACTCAGGTCCGCGCTTCTCTCAATGGCGGAAGTGGAAGTTCCAAAGGAAATGGTGATTGGTTTCTGTTGCCCGGCGCAACGGTGGCTACACTACTGATGCTGGGTGCGCTACATGCTCGTCGGATGTATGAGGACATGAAGGTTGTGGAGGCACATGAGAAGGGAACTGAATTTGAATTCCAGCCTGATGTAAAATCTACATTCTTAAGGTTGCTGCCTCTGCGCTCCATTTCAAGATGCTGGGGAGTGTTGACAAGCGTGGAAATTCCAGTCTCGTTGCGTTCACATGTTTATGGAGCCTGGGCTCGAGCATTCCATTCAAACTTAGAAGAAGCAGCTCTGCCTCTGGATGAATATGCATCATTACGAGATTTCTTTGTACGCACCTTGAAAGAAGGTTCCAGGCCTATTGACCCCAATCCCCAATGTCTGGTTAGTCCTGTCGATGGTACTGTACTAAGATTTGGGGAGATTAAAGGAGCAGGTGCTATGATTGAGCAAGTCAAAGGGTTTTCTTACTCAGTCTTTTCTCTTCTTGGTGCAACCTCGTTTCTTCCTACTATAGCTAAAGGAGATATGCATGATGAGAGTAGTGAAGCAGAAAATACTTCTGGGGAGAAGAGTAGGAAGTCATGGTGGAGTATATCATTCACATCTCCTAAAGTTTGGAACCCTTACTCAGCACGTCCTACGAAAGGCCTTTTTTACTGTGTAATTTACTTGAAGCCTGGAGATTATCATCGTATACATGCACCTGCTGATTGGAATATTCTTGTCCGCCGGCATTTTTCTGGTCGTCTATATCCTGTAAATGAACGTGCTACAAGAACAATCAGAAATCTTTATGTTGAGAATGAACGGGTTGTTCTGGAAGGTCTATGGCAAGAAGGATTTATGGCACTTGCTGCTGTTGGTGCAACAAATATTGGATCAATTGAGCTTTCCATTGAACCTGAACTTCGGACGAACCAGGCAAAAAAGAAGTTACTGCACTCCGATTGTCCAGAAGAACGGTTGTATGAACCTGATGGTGTTGGTAGGACGCTCAAGAAAGGCGATGAGGTAGCTGCATTCAATATGGGGTCAACGGTTGTGCTTGTTTTCCAGGCTCCCGTATCACTTTCACCAGAAAATGGGGAGTCCTCATCAGATTTCAAGTTTTCGGTCCAACGTGGGGATAGAGTCCGTGTTGGAGAAGCCCTTGGGAGGTGCCAAGATCAGTAA

Protein Analysis

445

Amino Acids

49.69

Weight (kDa)

8.99

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PS_Dcarbxylase PF02666 160 - 440 1.1e-52 Phosphatidylserine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 587, 877
Acc36I ACCTGC 2 cut(s) 587, 877
AccB1I GGYRCC 1 cut(s) 1323
AccB7I CCANNNNNTGG 2 cut(s) 544, 1247
AccI GTMKAC 1 cut(s) 859
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 124, 141, 892
AclWI GGATC 1 cut(s) 1051
AcsI RAATTY 3 cut(s) 284, 290, 378
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 4 cut(s) 18, 495, 565, 570
AfiI CCNNNNNNNGG 6 cut(s) 544, 560, 809, 1247, 1288, 1320
AflII CTTAAG 1 cut(s) 319
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 8 cut(s) 290, 348, 435, 505, 838, 1064, 1189, 1270
AjiI CACGTC 1 cut(s) 800
AjnI CCWGG 5 cut(s) 413, 515, 841, 1083, 1218
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 4 cut(s) 452, 680, 1054, 1181
AluI AGCT 4 cut(s) 452, 680, 1054, 1181
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 1 cut(s) 1051
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 2 cut(s) 518, 811
ApeKI GCWGC 5 cut(s) 78, 328, 449, 1019, 1181
ApoI RAATTY 3 cut(s) 284, 290, 378
AspLEI GCGC 4 cut(s) 128, 191, 223, 339
AspS9I GGNCC 2 cut(s) 121, 1279
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 50, 179, 1230
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 2 cut(s) 121, 1279
BanI GGYRCC 1 cut(s) 1323
BanII GRGCYC 1 cut(s) 421
BbvI GCAGC 5 cut(s) 65, 315, 461, 1006, 1168
BccI CCATC 2 cut(s) 554, 1136
BciT130I CCWGG 5 cut(s) 415, 517, 843, 1085, 1220
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 675
BfrI CTTAAG 1 cut(s) 319
BfuAI ACCTGC 2 cut(s) 587, 877
BisI GCNGC 5 cut(s) 79, 329, 450, 1020, 1182
BlsI GCNGC 5 cut(s) 80, 330, 451, 1021, 1183
Bme1390I CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
Bme18I GGWCC 2 cut(s) 121, 1279
BmeT110I CYCGRG 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 800
BmgT120I GGNCC 2 cut(s) 121, 1279
BmiI GGNNCC 5 cut(s) 412, 514, 785, 1224, 1325
BmrFI CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
BmsI GCATC 3 cut(s) 201, 341, 482
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 1145
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 2 cut(s) 414, 1315
Bsc4I CCNNNNNNNGG 6 cut(s) 544, 560, 809, 1247, 1288, 1320
Bse118I RCCGGY 1 cut(s) 894
Bse1I ACTGG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 5 cut(s) 415, 517, 843, 1085, 1220
BseDI CCNNGG 2 cut(s) 414, 1315
BseGI GGATG 2 cut(s) 243, 469
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 6 cut(s) 544, 560, 809, 1247, 1288, 1320
BseMII CTCAG 3 cut(s) 131, 648, 807
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 5 cut(s) 65, 315, 461, 1006, 1168
BseYI CCCAGC 2 cut(s) 214, 354
BsgI GTGCAG 1 cut(s) 1088
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 520, 813
BshNI GGYRCC 1 cut(s) 1323
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 2 cut(s) 186, 895
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 6 cut(s) 544, 560, 809, 1247, 1288, 1320
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 2 cut(s) 425, 1184
BsnI GGCC 2 cut(s) 520, 813
BsoBI CYCGRG 1 cut(s) 420
Bsp1286I GDGCHC 1 cut(s) 421
Bsp1407I TGTACA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 1043, 1330
BspACI CCGC 3 cut(s) 124, 141, 892
BspANI GGCC 2 cut(s) 520, 813
BspCNI CTCAG 3 cut(s) 130, 647, 806
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 5 cut(s) 412, 514, 785, 1224, 1325
BspMI ACCTGC 2 cut(s) 587, 877
BspPI GGATC 1 cut(s) 1051
BspT107I GGYRCC 1 cut(s) 1323
BspTI CTTAAG 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 894
BsrGI TGTACA 1 cut(s) 16
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 2 cut(s) 414, 1315
BssMI GATC 2 cut(s) 1043, 1330
BssNAI GTATAC 1 cut(s) 860
BssT1I CCWWGG 1 cut(s) 1315
Bst1107I GTATAC 1 cut(s) 860
Bst2UI CCWGG 5 cut(s) 415, 517, 843, 1085, 1220
Bst4CI ACNGT 5 cut(s) 196, 568, 824, 1128, 1204
Bst6I CTCTTC 3 cut(s) 96, 651, 728
BstAFI CTTAAG 1 cut(s) 319
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 896
BstDEI CTNAG 6 cut(s) 8, 117, 439, 572, 634, 793
BstENI CCTNNNNNAGG 1 cut(s) 807
BstF5I GGATG 2 cut(s) 243, 469
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 4 cut(s) 128, 191, 223, 339
BstKTI GATC 2 cut(s) 1046, 1333
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 1043, 1330
BstMWI GCNNNNNNNGC 6 cut(s) 197, 220, 227, 334, 1019, 1028
BstNI CCWGG 5 cut(s) 415, 517, 843, 1085, 1220
BstNSI RCATGY 3 cut(s) 230, 404, 866
BstSCI CCNGG 6 cut(s) 184, 413, 515, 841, 1083, 1218
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 5 cut(s) 65, 315, 461, 1006, 1168
BstZ17I GTATAC 1 cut(s) 860
BsuRI GGCC 2 cut(s) 520, 813
BtgZI GCGATG 1 cut(s) 1185
BtrI CACGTC 1 cut(s) 800
BtsCI GGATG 2 cut(s) 243, 469
BveI ACCTGC 2 cut(s) 587, 877
Cac8I GCNNGC 1 cut(s) 896
CfoI GCGC 4 cut(s) 128, 191, 223, 339
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 2 cut(s) 121, 1279
CseI GACGC 2 cut(s) 62, 1165
Csp6I GTAC 4 cut(s) 17, 494, 564, 569
CviAII CATG 8 cut(s) 20, 227, 250, 269, 401, 695, 747, 863
CviQI GTAC 4 cut(s) 17, 494, 564, 569
DdeI CTNAG 6 cut(s) 8, 117, 439, 572, 634, 793
DpnI GATC 2 cut(s) 1045, 1332
DpnII GATC 2 cut(s) 1043, 1330
Eam1104I CTCTTC 3 cut(s) 96, 651, 728
EarI CTCTTC 3 cut(s) 96, 651, 728
EciI GGCGGA 2 cut(s) 156, 881
Eco130I CCWWGG 1 cut(s) 1315
Eco147I AGGCCT 2 cut(s) 520, 813
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 121, 1279
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 807
EcoRI GAATTC 1 cut(s) 290
EcoRII CCWGG 5 cut(s) 413, 515, 841, 1083, 1218
EcoT14I CCWWGG 1 cut(s) 1315
EcoT22I ATGCAT 2 cut(s) 475, 696
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 1315
FaeI CATG 8 cut(s) 23, 230, 253, 272, 404, 698, 750, 866
FaqI GGGAC 1 cut(s) 11
FatI CATG 8 cut(s) 19, 226, 249, 268, 400, 694, 746, 862
FblI GTMKAC 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 79, 329, 450, 1020, 1182
FokI GGATG 2 cut(s) 250, 476
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 5 cut(s) 79, 329, 450, 1020, 1182
GlaI GCGC 4 cut(s) 127, 190, 222, 338
GluI GCNGC 5 cut(s) 79, 329, 450, 1020, 1182
GsaI CCCAGC 2 cut(s) 218, 358
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 2 cut(s) 520, 813
HapII CCGG 2 cut(s) 186, 895
HgaI GACGC 2 cut(s) 62, 1165
HhaI GCGC 4 cut(s) 128, 191, 223, 339
Hin1II CATG 8 cut(s) 23, 230, 253, 272, 404, 698, 750, 866
Hin6I GCGC 4 cut(s) 126, 189, 221, 337
HinP1I GCGC 4 cut(s) 126, 189, 221, 337
HincII GTYRAC 2 cut(s) 366, 1200
HindII GTYRAC 2 cut(s) 366, 1200
HinfI GANTC 3 cut(s) 24, 1253, 1296
HpaII CCGG 2 cut(s) 186, 895
HphI GGTGA 3 cut(s) 50, 179, 1230
Hpy166II GTNNAC 4 cut(s) 366, 398, 860, 1200
Hpy188I TCNGA 6 cut(s) 96, 237, 950, 1077, 1111, 1264
Hpy188III TCNNGA 5 cut(s) 348, 461, 983, 1118, 1162
Hpy8I GTNNAC 4 cut(s) 366, 398, 860, 1200
Hpy99I CGWCG 2 cut(s) 78, 237
HpyAV CCTTC 5 cut(s) 247, 268, 503, 980, 995
HpyCH4III ACNGT 5 cut(s) 196, 568, 824, 1128, 1204
HpyCH4IV ACGT 3 cut(s) 799, 931, 1285
HpyCH4V TGCA 7 cut(s) 473, 656, 694, 866, 1031, 1105, 1184
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 220, 227, 334, 1019, 1028
HpyF3I CTNAG 6 cut(s) 8, 117, 439, 572, 634, 793
HpySE526I ACGT 3 cut(s) 799, 931, 1285
Hsp92II CATG 8 cut(s) 23, 230, 253, 272, 404, 698, 750, 866
HspAI GCGC 4 cut(s) 126, 189, 221, 337
KroI GCCGGC 1 cut(s) 894
KroNI GCCGGC 1 cut(s) 896
Kzo9I GATC 2 cut(s) 1043, 1330
LmnI GCTCC 4 cut(s) 344, 410, 593, 1228
Lsp1109I GCAGC 5 cut(s) 65, 315, 461, 1006, 1168
LweI GCATC 3 cut(s) 201, 341, 482
MaeII ACGT 3 cut(s) 799, 931, 1285
MaeIII GTNAC 1 cut(s) 1098
MalI GATC 2 cut(s) 1045, 1332
MboI GATC 2 cut(s) 1043, 1330
MboII GAAGA 7 cut(s) 83, 109, 455, 638, 659, 745, 1133
MfeI CAATTG 1 cut(s) 1047
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 5 cut(s) 284, 290, 378, 828, 1047
MlyI GAGTC 3 cut(s) 33, 1262, 1305
MmeI TCCRAC 3 cut(s) 215, 1285, 1306
Mph1103I ATGCAT 2 cut(s) 475, 696
MroNI GCCGGC 1 cut(s) 894
MseI TTAA 2 cut(s) 320, 588
MslI CAYNNNNRTG 1 cut(s) 405
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 2 cut(s) 186, 895
MspR9I CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
MunI CAATTG 1 cut(s) 1047
Mva1269I GAATGC 2 cut(s) 425, 1184
MvaI CCWGG 5 cut(s) 415, 517, 843, 1085, 1220
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 6 cut(s) 197, 220, 227, 334, 1019, 1028
NaeI GCCGGC 1 cut(s) 896
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 1043, 1330
NgoMIV GCCGGC 1 cut(s) 894
NlaIII CATG 8 cut(s) 23, 230, 253, 272, 404, 698, 750, 866
NlaIV GGNNCC 5 cut(s) 412, 514, 785, 1224, 1325
NsiI ATGCAT 2 cut(s) 475, 696
NspI RCATGY 3 cut(s) 230, 404, 866
PaeR7I CTCGAG 1 cut(s) 420
PaqCI CACCTGC 2 cut(s) 587, 877
PceI AGGCCT 2 cut(s) 520, 813
PciI ACATGT 1 cut(s) 400
PctI GAATGC 2 cut(s) 425, 1184
PdiI GCCGGC 1 cut(s) 896
PflMI CCANNNNNTGG 2 cut(s) 544, 1247
PkrI GCNGC 5 cut(s) 80, 330, 451, 1021, 1183
PleI GAGTC 3 cut(s) 32, 1261, 1304
PpsI GAGTC 3 cut(s) 32, 1261, 1304
PscI ACATGT 1 cut(s) 400
Psp6I CCWGG 5 cut(s) 413, 515, 841, 1083, 1218
PspFI CCCAGC 2 cut(s) 214, 354
PspGI CCWGG 5 cut(s) 413, 515, 841, 1083, 1218
PspN4I GGNNCC 5 cut(s) 412, 514, 785, 1224, 1325
PspPI GGNCC 2 cut(s) 121, 1279
PspXI VCTCGAGB 1 cut(s) 420
RsaI GTAC 4 cut(s) 18, 495, 565, 570
RsaNI GTAC 4 cut(s) 17, 494, 564, 569
RseI CAYNNNNRTG 1 cut(s) 405
SaqAI TTAA 2 cut(s) 320, 588
SatI GCNGC 5 cut(s) 79, 329, 450, 1020, 1182
Sau3AI GATC 2 cut(s) 1043, 1330
Sau96I GGNCC 2 cut(s) 121, 1279
SchI GAGTC 3 cut(s) 33, 1262, 1305
ScrFI CCNGG 6 cut(s) 186, 415, 517, 843, 1085, 1220
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 3 cut(s) 201, 341, 482
SfcI CTRYAG 1 cut(s) 675
Sfr274I CTCGAG 1 cut(s) 420
SinI GGWCC 2 cut(s) 121, 1279
SlaI CTCGAG 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 3 cut(s) 319, 420, 1160
SmoI CTYRAG 3 cut(s) 319, 420, 1160
Sse9I AATT 5 cut(s) 284, 290, 378, 828, 1047
SseBI AGGCCT 2 cut(s) 520, 813
SsiI CCGC 3 cut(s) 124, 141, 892
SspI AATATT 2 cut(s) 883, 1039
StuI AGGCCT 2 cut(s) 520, 813
StyD4I CCNGG 6 cut(s) 184, 413, 515, 841, 1083, 1218
StyI CCWWGG 1 cut(s) 1315
TaaI ACNGT 5 cut(s) 196, 568, 824, 1128, 1204
TaiI ACGT 3 cut(s) 802, 934, 1288
TaqI TCGA 2 cut(s) 421, 558
TaqII GACCGA 1 cut(s) 1267
TasI AATT 5 cut(s) 284, 290, 378, 828, 1047
TatI WGTACW 2 cut(s) 16, 568
Tru1I TTAA 2 cut(s) 320, 588
Tru9I TTAA 2 cut(s) 320, 588
TseI GCWGC 5 cut(s) 78, 328, 449, 1019, 1181
TspDTI ATGAA 6 cut(s) 17, 266, 480, 942, 984, 1149
TspGWI ACGGA 1 cut(s) 1289
Van91I CCANNNNNTGG 2 cut(s) 544, 1247
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 121, 1279
XagI CCTNNNNNAGG 1 cut(s) 807
XapI RAATTY 3 cut(s) 284, 290, 378
XceI RCATGY 3 cut(s) 230, 404, 866
XhoI CTCGAG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 859
Zsp2I ATGCAT 2 cut(s) 475, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.