Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8483489.1

Orthogroup ID

OG0007450

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 389

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8483489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 388 bp

atggcatcgtatggaaacttgatgttcgtggacgagcctcggtgcgagtcgtttggtaccgagcagcagatgggctcggagatcttggtcgaaagtgtttctgagcagaacaactgcttggaggctcagcctttacctggtcgtaatgtggaccttaccagtgaggcggacgtgtctccggggttttgtaggaatgacaatgctggttgtgtgagctgcagtgaggtgacggagttgggtactggcgatagagatggtttggcgggtggtggtgaaagtacgagtgttatggagccggaagattttttgaacagtgagtatgggatcaataggtgtggcttggatgagaatcagaatgatgtggatggttgttctagtattggaagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0002682 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006629 GO:0006720 GO:0006721 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010363 GO:0010452 GO:0010468 GO:0010604 GO:0010638 GO:0010941 GO:0016043 GO:0016108 GO:0016116 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034968 GO:0035670 GO:0036211 GO:0040029 GO:0042054 GO:0042800 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045088 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1905269 GO:1905393 GO:2000026 GO:2000241 GO:2000242 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET zf-CW

Protein Analysis

129

Amino Acids

13.65

Weight (kDa)

4.05

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77300 AT1G77300
fragaria_vesca	FvH4_2g27880 FvH4_2g27880 FvH4_2g27880 FvH4_2g27880 FvH4_2g27880
malus_domestica	MD08G1159600.v1.1 MD15G1133700.v1.1
prunus_persica	Prupe.1G489300_v2.0.a1 Prupe.1G489300_v2.0.a1
pyrus_communis	pycom15g12050 pycom323g00070
rosa_chinensis	RchiOBHm_Chr6g0296741
rosa_laevigata	RLG00000011663
rosa_multiflora	Rmu_co8483489.1_g000001 Rmu_sc0031080.1_g000001 Rmu_ssc0000192.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171210
rosa_rugosa	Rorug06G0265500
rosa_samantha	Rh6AG376500 Rh6BG384800 Rh6CG390200 Rh6DG377300
rosa_wichuraiana	Rw6G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	2 cut(s)	167, 263
AclWI	GGATC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	58, 241, 280
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	64, 216
Asp718I	GGTACC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	238, 284
AvaII	GGWCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	76, 203
BccI	CCATC	3 cut(s)	64, 248, 359
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	217
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	2 cut(s)	65, 217
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	2 cut(s)	66, 218
Bme1390I	CCNGG	2 cut(s)	138, 180
Bme18I	GGWCC	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	58, 294
BmrFI	CCNGG	2 cut(s)	138, 180
BmsI	GCATC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	38, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	159, 247
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	38, 179
BseGI	GGATG	2 cut(s)	349, 370
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	2 cut(s)	93, 140
BseNI	ACTGG	2 cut(s)	159, 247
BseXI	GCAGC	2 cut(s)	76, 203
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	179, 296
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	81, 324
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	2 cut(s)	167, 263
BspCNI	CTCAG	2 cut(s)	94, 139
BspLI	GGNNCC	2 cut(s)	58, 294
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	159, 247
BssECI	CCNNGG	2 cut(s)	38, 179
BssMI	GATC	2 cut(s)	81, 324
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	102, 126
BstF5I	GGATG	2 cut(s)	349, 370
BstKTI	GATC	2 cut(s)	84, 327
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	81, 324
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	136, 178
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	76, 203
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	349, 370
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	3 cut(s)	166, 226, 319
Cfr13I	GGNCC	1 cut(s)	151
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	57, 240, 279
CspCI	CAANNNNNGTGG	2 cut(s)	316, 351
CviJI	RGCY	7 cut(s)	37, 75, 125, 130, 216, 295, 339
CviKI_1	RGCY	7 cut(s)	37, 75, 125, 130, 216, 295, 339
CviQI	GTAC	3 cut(s)	57, 240, 279
DdeI	CTNAG	2 cut(s)	102, 126
DpnI	GATC	2 cut(s)	83, 326
DpnII	GATC	2 cut(s)	81, 324
EciI	GGCGGA	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	77
FaiI	YATR	3 cut(s)	12, 290, 321
FauI	CCCGC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	65, 217
FokI	GGATG	2 cut(s)	356, 377
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	65, 217
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	2 cut(s)	65, 217
HapII	CCGG	2 cut(s)	179, 296
HinfI	GANTC	2 cut(s)	47, 349
HpaII	CCGG	2 cut(s)	179, 296
HphI	GGTGA	2 cut(s)	238, 284
Hpy166II	GTNNAC	2 cut(s)	31, 151
Hpy188I	TCNGA	3 cut(s)	79, 103, 354
Hpy8I	GTNNAC	2 cut(s)	31, 151
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	219
HpyF3I	CTNAG	2 cut(s)	102, 126
HpySE526I	ACGT	1 cut(s)	171
KpnI	GGTACC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	81, 324
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	7 cut(s)	123, 150, 172, 189, 192, 228, 309
Lsp1109I	GCAGC	2 cut(s)	76, 203
LweI	GCATC	1 cut(s)	14
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	83, 326
MboI	GATC	2 cut(s)	81, 324
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	48, 115, 157, 217
MspI	CCGG	2 cut(s)	179, 296
MspR9I	CCNGG	2 cut(s)	138, 180
MvaI	CCWGG	1 cut(s)	138
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	81, 324
NlaIV	GGNNCC	2 cut(s)	58, 294
NmuCI	GTSAC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	66, 218
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	58, 294
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	3 cut(s)	58, 241, 280
RsaNI	GTAC	3 cut(s)	57, 240, 279
SatI	GCNGC	2 cut(s)	65, 217
Sau3AI	GATC	2 cut(s)	81, 324
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	138, 180
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	6 cut(s)	139, 156, 174, 218, 228, 335
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	151
SsiI	CCGC	2 cut(s)	167, 263
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	2 cut(s)	136, 178
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	349
TscAI	CASTG	3 cut(s)	166, 226, 319
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	64, 216
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	3 cut(s)	166, 226, 319
VpaK11BI	GGWCC	1 cut(s)	151
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.