Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031080.1

Orthogroup ID

OG0007450

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 861

Gene Structure 860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 860 bp

atgcagttgaaggaaggctggtgtcgtgaggatggctttgccggttcatttgacgattgtgaagtgccctcgaaagtcataccttccacagggtcaccaggaaatggtattcaactggatgagcacagggatgataaaagtgctaatcgtctgtcttctgaagggatgatggaagttatggaagagcaaggtgaattgcccatggaatttgtagacattgatgtttgtagggattacaacatcttttctggtaattcattggaagctgctaatgaaaaaagtgttgctttgactgggatagaagctggtggtttgtgccacgggacatcacctgcacaggatggtggaatgccttcagaagtatcaaacacaggtgatctagtgactaactgtaactggaataaagaacatattgacgataatggtgtcagtggtgtaagcgggctctctactgaaaagtccacagaggtttctgaggcatgcaaccaaatgttgccgtcactgagttttcaaggatctttggaagatttgcacatgcctaattcactgagtaattttgcccagcagagtgatccaaggggtaataatgcagttgatggttccttggctgacagggttacagaatttatggaagagaaaagtaatgttatgacagacaaggaggctgaaattcacacccagatatcaactgtaaaagttaacgtctcctgtttgaaggaaatttcctccaatgtagctcccaactgcattattgagaattctgttcctcctcagtcatgtgatgccttcagtattgctaataatggtgtcaatggacattatgctgatagtgttacagaggttgttgacatgaaaagcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0002682 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006629 GO:0006720 GO:0006721 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009553 GO:0009555 GO:0009653 GO:0009791 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010016 GO:0010223 GO:0010346 GO:0010363 GO:0010452 GO:0010468 GO:0010604 GO:0010638 GO:0010941 GO:0016043 GO:0016108 GO:0016116 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034968 GO:0035670 GO:0036211 GO:0040029 GO:0042054 GO:0042800 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045088 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1905269 GO:1905393 GO:2000026 GO:2000241 GO:2000242 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET zf-CW

Protein Analysis

286

Amino Acids

30.63

Weight (kDa)

4.24

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77300 AT1G77300
fragaria_vesca	FvH4_2g27880 FvH4_2g27880 FvH4_2g27880 FvH4_2g27880 FvH4_2g27880
malus_domestica	MD08G1159600.v1.1 MD15G1133700.v1.1
prunus_persica	Prupe.1G489300_v2.0.a1 Prupe.1G489300_v2.0.a1
pyrus_communis	pycom15g12050 pycom323g00070
rosa_chinensis	RchiOBHm_Chr6g0296741
rosa_laevigata	RLG00000011663
rosa_multiflora	Rmu_co8483489.1_g000001 Rmu_sc0031080.1_g000001 Rmu_ssc0000192.1_g000006
rosa_roxburghii	Rroxscaffold_7G00171210
rosa_rugosa	Rorug06G0265500
rosa_samantha	Rh6AG376500 Rh6BG384800 Rh6CG390200 Rh6DG377300
rosa_wichuraiana	Rw6G032920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	340
AccB7I	CCANNNNNTGG	1 cut(s)	104
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	2 cut(s)	523, 566
AcsI	RAATTY	5 cut(s)	206, 623, 669, 720, 757
AcuI	CTGAAG	3 cut(s)	180, 339, 772
AfiI	CCNNNNNNNGG	2 cut(s)	89, 104
AgsI	TTSAA	4 cut(s)	10, 113, 512, 715
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	3 cut(s)	266, 305, 737
AluI	AGCT	3 cut(s)	266, 305, 737
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	709
AlwI	GGATC	2 cut(s)	523, 566
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	5 cut(s)	206, 623, 669, 720, 757
Asp700I	GAANNNNTTC	1 cut(s)	352
AsuHPI	GGTGA	4 cut(s)	87, 203, 321, 386
BaeGI	GKGCMC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	26, 163, 335, 590
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	201, 319, 575, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 104
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	120, 298, 401
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	4 cut(s)	201, 319, 575, 603
BseGI	GGATG	5 cut(s)	37, 124, 136, 171, 346
BseLI	CCNNNNNNNGG	2 cut(s)	89, 104
BseMII	CTCAG	4 cut(s)	465, 494, 539, 785
BseNI	ACTGG	3 cut(s)	120, 298, 401
BseRI	GAGGAG	1 cut(s)	759
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	561
BsgI	GTGCAG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	89, 104
BsmAI	GTCTC	1 cut(s)	709
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	354
Bsp1286I	GDGCHC	3 cut(s)	69, 126, 447
Bsp143I	GATC	3 cut(s)	376, 515, 571
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	1 cut(s)	441
BspCNI	CTCAG	4 cut(s)	466, 495, 540, 784
BspLI	GGNNCC	1 cut(s)	601
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	523, 566
BspQI	GCTCTTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	120, 298, 401
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	201, 319, 575, 603
BssMI	GATC	3 cut(s)	376, 515, 571
BssT1I	CCWWGG	3 cut(s)	201, 575, 603
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	392, 691
Bst6I	CTCTTC	2 cut(s)	177, 627
BstC8I	GCNNGC	2 cut(s)	443, 481
BstDEI	CTNAG	4 cut(s)	474, 503, 548, 771
BstDSI	CCRYGG	2 cut(s)	201, 319
BstEII	GGTNACC	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	5 cut(s)	37, 124, 136, 171, 346
BstKTI	GATC	3 cut(s)	379, 518, 574
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	3 cut(s)	376, 515, 571
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	2 cut(s)	483, 538
BstPI	GGTNACC	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BtgI	CCRYGG	2 cut(s)	201, 319
BtsCI	GGATG	5 cut(s)	37, 124, 136, 171, 346
BtsIMutI	CAGTG	3 cut(s)	436, 500, 545
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	443, 481
Cfr10I	RCCGGY	1 cut(s)	41
CviAII	CATG	5 cut(s)	202, 480, 535, 777, 850
CviJI	RGCY	8 cut(s)	18, 36, 266, 305, 445, 608, 665, 737
CviKI_1	RGCY	8 cut(s)	18, 36, 266, 305, 445, 608, 665, 737
DdeI	CTNAG	4 cut(s)	474, 503, 548, 771
DpnI	GATC	3 cut(s)	378, 517, 573
DpnII	GATC	3 cut(s)	376, 515, 571
Eam1104I	CTCTTC	2 cut(s)	177, 627
EarI	CTCTTC	2 cut(s)	177, 627
Eco130I	CCWWGG	3 cut(s)	201, 575, 603
Eco24I	GRGCYC	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	684
Eco57I	CTGAAG	3 cut(s)	180, 339, 772
Eco91I	GGTNACC	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO65I	GGTNACC	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	97
EcoRV	GATATC	1 cut(s)	684
EcoT14I	CCWWGG	3 cut(s)	201, 575, 603
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	3 cut(s)	201, 575, 603
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	5 cut(s)	205, 483, 538, 780, 853
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	5 cut(s)	201, 479, 534, 776, 849
FauI	CCCGC	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	5 cut(s)	44, 131, 143, 178, 353
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	565
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	5 cut(s)	205, 483, 538, 780, 853
HincII	GTYRAC	2 cut(s)	700, 847
HindII	GTYRAC	2 cut(s)	700, 847
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	4 cut(s)	87, 203, 321, 386
Hpy166II	GTNNAC	4 cut(s)	214, 462, 700, 847
Hpy188I	TCNGA	3 cut(s)	160, 358, 475
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	4 cut(s)	214, 462, 700, 847
HpyAV	CCTTC	7 cut(s)	4, 8, 93, 155, 363, 709, 796
HpyCH4III	ACNGT	2 cut(s)	392, 691
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	6 cut(s)	4, 335, 483, 532, 590, 747
HpyF3I	CTNAG	4 cut(s)	474, 503, 548, 771
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	5 cut(s)	205, 483, 538, 780, 853
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	376, 515, 571
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	742
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	6 cut(s)	93, 382, 392, 498, 616, 832
MalI	GATC	3 cut(s)	378, 517, 573
MboI	GATC	3 cut(s)	376, 515, 571
MboII	GAAGA	4 cut(s)	147, 194, 536, 644
MflI	RGATCY	1 cut(s)	515
MhlI	GDGCHC	3 cut(s)	69, 126, 447
MluCI	AATT	9 cut(s)	194, 206, 253, 541, 553, 623, 669, 720, 757
MnlI	CCTC	9 cut(s)	22, 79, 460, 469, 655, 736, 777, 780, 832
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	376, 515, 571
NlaIII	CATG	5 cut(s)	205, 483, 538, 780, 853
NlaIV	GGNNCC	1 cut(s)	601
NmuCI	GTSAC	3 cut(s)	93, 382, 498
NspI	RCATGY	2 cut(s)	483, 538
PaeI	GCATGC	1 cut(s)	483
PaqCI	CACCTGC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	3 cut(s)	376, 515, 571
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	3 cut(s)	69, 126, 447
SfaNI	GCATC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	129
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	9 cut(s)	194, 206, 253, 541, 553, 623, 669, 720, 757
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	3 cut(s)	201, 575, 603
TaaI	ACNGT	2 cut(s)	392, 691
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	1 cut(s)	71
TasI	AATT	9 cut(s)	194, 206, 253, 541, 553, 623, 669, 720, 757
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	3 cut(s)	436, 507, 552
TseFI	GTSAC	3 cut(s)	93, 382, 498
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	3 cut(s)	93, 382, 498
TspDTI	ATGAA	3 cut(s)	36, 246, 288
TspRI	CASTG	3 cut(s)	436, 507, 552
Van91I	CCANNNNNTGG	1 cut(s)	104
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	5 cut(s)	206, 623, 669, 720, 757
XceI	RCATGY	2 cut(s)	483, 538
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.