Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495289.1

Orthogroup ID

OG0008868

Physical Location & Seq

Genomic Coordinates Reverse (-)

2097 .. 2444

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495289.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtcaattcttccacaaaattcttcatctttaacaagtcaaactggcaatctgggacctggagtcattggaagagggtcaattgttccacaaagtcaaatagccaatgctgtgacacaaccctttgcaaactcaaatcatgcagagccatcctcctcaaagctagccgagcagccaatgaagaattccctaccagggtctagtctaggactcagacaacctcaggtagctcggccattttcaggagttaatgcttcatctttagtcagagaacctaatcaccgaaatgattttcaaggtctggttctaacacttggaggatcaggaagtggctctggtggtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

115

Amino Acids

11.69

Weight (kDa)

10.78

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07501 FvH4_6g07501
malus_domestica	MD00G1208300.v1.1 MD12G1205300.v1.1
prunus_persica	Prupe.6G312400_v2.0.a1 Prupe.6G312400_v2.0.a1 Prupe.6G312400_v2.0.a1 Prupe.6G312400_v2.0.a1
pyrus_communis	pycom04g17040 pycom12g19310 pycom12g19320
rosa_chinensis	RchiOBHm_Chr3g0457201
rosa_laevigata	RLG00000025243
rosa_multiflora	Rmu_co8495289.1_g000002 Rmu_sc0000488.1_g000018 Rmu_sc0016952.1_g000006
rosa_roxburghii	Rroxscaffold_6G00422120
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079200 Rh3BG080900 Rh3CG081100 Rh3DG082900
rosa_wichuraiana	Rw3G006820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	19, 184
AfiI	CCNNNNNNNGG	2 cut(s)	195, 242
AgsI	TTSAA	1 cut(s)	296
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	58, 193
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	2 cut(s)	163, 230
AluI	AGCT	2 cut(s)	163, 230
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	19, 184
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	60, 195
BfaI	CTAG	3 cut(s)	164, 201, 206
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	60, 195
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	60, 195
BmtI	GCTAGC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 242
Bse1I	ACTGG	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	60, 195
BseDI	CCNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	195, 242
BseMII	CTCAG	2 cut(s)	226, 236
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	195, 242
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	225, 235
BspLI	GGNNCC	1 cut(s)	57
BspOI	GCTAGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	60, 195
Bst6I	CTCTTC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	212, 222
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	60, 195
BstSCI	CCNGG	2 cut(s)	58, 193
BstV1I	GCAGC	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	8 cut(s)	104, 148, 163, 167, 175, 230, 235, 333
CviKI_1	RGCY	8 cut(s)	104, 148, 163, 167, 175, 230, 235, 333
DdeI	CTNAG	2 cut(s)	212, 222
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
DriI	GACNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	67
Eam1105I	GACNNNNNGTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	58, 193
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	3 cut(s)	164, 201, 206
GluI	GCNGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	143
HinfI	GANTC	2 cut(s)	63, 210
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	2 cut(s)	215, 269
Hpy188III	TCNNGA	2 cut(s)	243, 324
HpyCH4V	TGCA	2 cut(s)	128, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	212, 222
Hsp92II	CATG	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	320
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	3 cut(s)	164, 201, 206
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MboII	GAAGA	3 cut(s)	15, 84, 193
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	4 cut(s)	6, 19, 81, 184
MlyI	GAGTC	2 cut(s)	72, 204
MnlI	CCTC	5 cut(s)	68, 163, 166, 231, 311
MseI	TTAA	2 cut(s)	32, 249
MslI	CAYNNNNRTG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	60, 195
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	2 cut(s)	60, 195
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	320
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	57
NmeAIII	GCCGAG	2 cut(s)	193, 211
NmuCI	GTSAC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	2 cut(s)	71, 204
PpsI	GAGTC	2 cut(s)	71, 204
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	58, 193
PspGI	CCWGG	2 cut(s)	58, 193
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	56
PspPPI	RGGWCCY	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	32, 249
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	2 cut(s)	72, 204
ScrFI	CCNGG	2 cut(s)	60, 195
SetI	ASST	7 cut(s)	61, 165, 223, 228, 232, 277, 301
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	4 cut(s)	6, 19, 81, 184
SspMI	CTAG	3 cut(s)	164, 201, 206
StyD4I	CCNGG	2 cut(s)	58, 193
TasI	AATT	4 cut(s)	6, 19, 81, 184
Tru1I	TTAA	2 cut(s)	32, 249
Tru9I	TTAA	2 cut(s)	32, 249
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	15, 194, 246
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	19, 184
XspI	CTAG	3 cut(s)	164, 201, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.