Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008868

Physical Location & Seq

Genomic Coordinates Reverse (-)

6291628 .. 6297116

Gene Structure 5489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG079200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGGGTCTTTGGGAGGTGAAGAAGCTACCAGGAAGAAGGCAATGTGGCTCTACCCAAAGCTTGTGGGATTCAATCCTTCTGAAAGATGGGGGCACTCTGCTTGTTATTTTCAAGGGAATATGTATGTTTTTGGGGGATGTTCTGGAGGTATGCATTACAGTGATGTTCTTGTGCTTAATTATGAAACGATGGCCTGGAACACTCTTGTAACAACTGGTAAAGGGCCTGGTCCTAGGGATAGCCACAGTACCGTTGTTCTGGGTAATAATATGATAGTTTTTGGGGGTACAAGTGGCTCCAAGAAGTGTAATGATCTTCACATTTTAAATCTGATGACCAAAGAATGGACTCGACCAGAATGTGGCGGAACTCCACCTTCGCCCCGAGAAAGTCATTCTGCCACGCTTGTGGATGATGAAGAATTAGTGGTTTTTGGGGGAAGTGGAGAAGGTCAAAGCTTGAATGATCTGCATGTTCTAGACCTCAAAACCATGAGATGGACTTCCCCTGAGGTGAAGGGTGATATTCCTGTTCCTAGAGACAGTCATAGTGCTATTGCAATAGGAAAGAAGATGCTTGTGTACGGTGGTGACCGTGGTGATAGGTATTATGGTGATGTTGATATGCTTGACATGGACACAATGACTTGGTCAAGGTTGGCTGTTCAAGGATCTTCACCCGGTGGCAGGGCTGGTCATGCAGCTGTGAGTATTGGCACAAAGGTCTATGTCATTGGAGGGGTTGGACACAAACGGTACTACAATGATGCATGGGTTCTGGATTCAAGTACTTGTTCATGGACCCAACTCGATGTATGCGGCCAACTGCCACAAGGGAGGTTCTCTCACACTGCTGTTGTTACCGACTCTGACATTGCCGTCTATGGAGGGTGTGGGGAGGATGATCGTCCTCTCGATGAGTTGTTGGTGTTGCAGCTTGGAACAGAACTGCCAAATGAGTGTTACAATGTTCCTATGTGCAAAATTTTTGGAAGCCATTTAAACCAAGAGAGGAGAAGGTTCTCTAGGGGAGCTGAATTTAACACGAATGTGAAACCTACGCTTATGGGGAATCCTGTAGTAGTAAGACAGACATCCAAGAGATCAGAATCAGAAACAAAGCGAACCTCTTTAAAATCAGATACTCTGCATCCAAAAAGGAGAAGAAGTACCACTTCGAAAGCATGGGATGTTGAATCAGAACAAGAAGAGCATTCTCTATCTCTGTCCCAGCATTCATCATCATCTCACTCAGACCAAGAACAGCAACAGACCCCAACTCCCAAACTTGAAGATTCTGCCCCACCTTCTAAAGGTTTTCATATCTTTAAGCAATTAAATCAGAGTCCGAACATAAAGATCTTAGAAATTCCAGCCAAAGATCTCAGAATTTCCACGCAAAGAACTCCAGAGGAACTTAGCCACTTGTTAGGAGCACATCAAATGAAAGCGAGACGAGAACAGTATCTTCATGGTCGACCAAGCATGCACTTTCAAGCTGCAGGGCCTATGCAGAACCCGGTATGCATTTCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_3 Kelch_4

Protein Analysis

512

Amino Acids

56.54

Weight (kDa)

6.85

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_HCF	PF13854	12 - 97	8.3e-13	Host cell factor, Kelch-repeats domain
Beta-prop_FBX42	PF13415	13 - 167	4.1e-39	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	14 - 197	7.4e-61	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	53 - 197	6.4e-23	Attractin/LZTR1 beta-propeller
Kelch_FKB95	PF25210	76 - 204	3.4e-07	FKB95, Kelch-repeats domain
Kelch_1	PF01344	78 - 118	1.2e-06	Kelch motif
Kelch_HCF	PF13854	104 - 197	2.5e-18	Host cell factor, Kelch-repeats domain
Beta-prop_TYW4	PF13418	126 - 231	1.8e-06	tRNA wybutosine-synthesizing protein 4, beta-propeller
Beta-prop_FBX42	PF13415	132 - 217	1.1e-20	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	141 - 297	2.8e-50	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	144 - 299	6.3e-23	Attractin/LZTR1 beta-propeller
Beta-prop_FBX42	PF13415	152 - 315	4.6e-36	FBX42, beta-propeller domain
NANM	PF24996	175 - 299	2.6e-06	N-acetylneuraminate epimerase
Kelch_HCF	PF13854	191 - 247	6e-10	Host cell factor, Kelch-repeats domain
Beta-prop_TYW4	PF13418	227 - 338	5.9e-06	tRNA wybutosine-synthesizing protein 4, beta-propeller
Kelch_FKB95	PF25210	229 - 303	2.1e-06	FKB95, Kelch-repeats domain
Kelch_1	PF01344	230 - 270	1.2e-10	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07501 FvH4_6g07501
malus_domestica	MD00G1208300.v1.1 MD12G1205300.v1.1
prunus_persica	Prupe.6G312400_v2.0.a1 Prupe.6G312400_v2.0.a1 Prupe.6G312400_v2.0.a1 Prupe.6G312400_v2.0.a1
pyrus_communis	pycom04g17040 pycom12g19310 pycom12g19320
rosa_chinensis	RchiOBHm_Chr3g0457201
rosa_laevigata	RLG00000025243
rosa_multiflora	Rmu_co8495289.1_g000002 Rmu_sc0000488.1_g000018 Rmu_sc0016952.1_g000006
rosa_roxburghii	Rroxscaffold_6G00422120
rosa_rugosa	Rorug03G0019400
rosa_samantha	Rh3AG079200 Rh3BG080900 Rh3CG081100 Rh3DG082900
rosa_wichuraiana	Rw3G006820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	878
AccB7I	CCANNNNNTGG	3 cut(s)	345, 362, 498
AccI	GTMKAC	1 cut(s)	1477
AciI	CCGC	2 cut(s)	366, 819
AclWI	GGATC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	4 cut(s)	984, 1037, 1368, 1389
AdeI	CACNNNGTG	1 cut(s)	683
AfaI	GTAC	6 cut(s)	250, 289, 584, 758, 790, 1171
AfiI	CCNNNNNNNGG	5 cut(s)	345, 362, 498, 687, 1313
AgsI	TTSAA	8 cut(s)	73, 113, 463, 668, 786, 1196, 1292, 1496
AjnI	CCWGG	3 cut(s)	29, 194, 226
AleI	CACNNNNGTG	2 cut(s)	407, 1049
AluBI	AGCT	7 cut(s)	26, 61, 459, 704, 937, 1034, 1499
AluI	AGCT	7 cut(s)	26, 61, 459, 704, 937, 1034, 1499
Alw21I	GWGCWC	1 cut(s)	1438
Alw26I	GTCTC	2 cut(s)	534, 1447
AlwI	GGATC	1 cut(s)	679
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	4 cut(s)	192, 224, 820, 1505
ApeKI	GCWGC	3 cut(s)	701, 934, 1499
ApoI	RAATTY	4 cut(s)	984, 1037, 1368, 1389
AspA2I	CCTAGG	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	224, 230, 801, 1505
AsuC2I	CCSGG	2 cut(s)	681, 1520
AsuHPI	GGTGA	7 cut(s)	29, 526, 533, 602, 611, 626, 669
AsuII	TTCGAA	1 cut(s)	1178
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	2 cut(s)	230, 801
AvrII	CCTAGG	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	1438
BbvI	GCAGC	3 cut(s)	713, 946, 1486
BccI	CCATC	3 cut(s)	81, 184, 492
BceAI	ACGGC	1 cut(s)	863
BciT130I	CCWGG	3 cut(s)	31, 196, 228
BcnI	CCSGG	2 cut(s)	681, 1520
BcoDI	GTCTC	2 cut(s)	534, 1447
BfaI	CTAG	4 cut(s)	234, 479, 537, 1026
BfmI	CTRYAG	2 cut(s)	1077, 1500
BglII	AGATCT	2 cut(s)	1359, 1381
BisI	GCNGC	4 cut(s)	702, 820, 935, 1500
BlnI	CCTAGG	1 cut(s)	233
BlsI	GCNGC	4 cut(s)	703, 821, 936, 1501
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	5 cut(s)	31, 196, 228, 681, 1520
Bme18I	GGWCC	2 cut(s)	230, 801
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	4 cut(s)	224, 230, 801, 1505
BmiI	GGNNCC	2 cut(s)	298, 803
BmrFI	CCNGG	5 cut(s)	31, 196, 228, 681, 1520
BmsI	GCATC	3 cut(s)	564, 757, 1159
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
BpmI	CTGGAG	2 cut(s)	165, 1392
Bpu14I	TTCGAA	1 cut(s)	1178
BpuMI	CCSGG	2 cut(s)	681, 1520
BsaBI	GATNNNNATC	1 cut(s)	1108
BsaJI	CCNNGG	2 cut(s)	233, 595
BsaXI	ACNNNNNCTCC	4 cut(s)	1153, 1183, 1264, 1294
Bsc4I	CCNNNNNNNGG	5 cut(s)	345, 362, 498, 687, 1313
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	48, 873
Bse8I	GATNNNNATC	1 cut(s)	1108
BseBI	CCWGG	3 cut(s)	31, 196, 228
BseDI	CCNNGG	2 cut(s)	233, 595
BseGI	GGATG	6 cut(s)	143, 418, 907, 1094, 1150, 1195
BseJI	GATNNNNATC	1 cut(s)	1108
BseLI	CCNNNNNNNGG	5 cut(s)	345, 362, 498, 687, 1313
BseMI	GCAATG	2 cut(s)	48, 873
BseMII	CTCAG	3 cut(s)	501, 1266, 1399
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	1027
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	713, 946, 1486
BseYI	CCCAGC	1 cut(s)	1230
BshFI	GGCC	4 cut(s)	194, 226, 822, 1507
BsiHKAI	GWGCWC	1 cut(s)	1438
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	681, 1520
BslFI	GGGAC	1 cut(s)	1213
BslI	CCNNNNNNNGG	5 cut(s)	345, 362, 498, 687, 1313
BsmAI	GTCTC	2 cut(s)	534, 1447
BsmBI	CGTCTC	1 cut(s)	1447
BsmFI	GGGAC	1 cut(s)	1213
BsmI	GAATGC	2 cut(s)	1213, 1234
BsnI	GGCC	4 cut(s)	194, 226, 822, 1507
BsoBI	CYCGRG	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	1178
Bsp1286I	GDGCHC	2 cut(s)	96, 1438
Bsp143I	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
BspACI	CCGC	2 cut(s)	366, 819
BspANI	GGCC	4 cut(s)	194, 226, 822, 1507
BspCNI	CTCAG	3 cut(s)	502, 1265, 1398
BspLI	GGNNCC	2 cut(s)	298, 803
BspMAI	CTGCAG	1 cut(s)	1504
BspPI	GGATC	1 cut(s)	679
BspQI	GCTCTTC	1 cut(s)	1203
BspT104I	TTCGAA	1 cut(s)	1178
BsrDI	GCAATG	2 cut(s)	48, 873
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	233, 595
BssMI	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	31, 196, 228
Bst4CI	ACNGT	8 cut(s)	161, 248, 253, 545, 587, 596, 756, 1464
Bst6I	CTCTTC	1 cut(s)	1203
BstBI	TTCGAA	1 cut(s)	1178
BstC8I	GCNNGC	1 cut(s)	1487
BstDEI	CTNAG	5 cut(s)	510, 1252, 1363, 1385, 1418
BstDSI	CCRYGG	1 cut(s)	595
BstEII	GGTNACC	1 cut(s)	590
BstENI	CCTNNNNNAGG	1 cut(s)	1311
BstF5I	GGATG	6 cut(s)	143, 418, 907, 1094, 1150, 1195
BstKTI	GATC	7 cut(s)	316, 469, 674, 907, 1106, 1362, 1384
BstMAI	GTCTC	2 cut(s)	534, 1447
BstMBI	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	3 cut(s)	31, 196, 228
BstNSI	RCATGY	2 cut(s)	476, 1489
BstPI	GGTNACC	1 cut(s)	590
BstSCI	CCNGG	5 cut(s)	29, 194, 226, 679, 1518
BstSFI	CTRYAG	2 cut(s)	1077, 1500
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	713, 946, 1486
BstX2I	RGATCY	3 cut(s)	671, 1359, 1381
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	3 cut(s)	671, 1359, 1381
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	4 cut(s)	194, 226, 822, 1507
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	6 cut(s)	143, 418, 907, 1094, 1150, 1195
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	2 cut(s)	166, 849
Cac8I	GCNNGC	1 cut(s)	1487
Cfr13I	GGNCC	4 cut(s)	224, 230, 801, 1505
Csp6I	GTAC	6 cut(s)	249, 288, 583, 757, 789, 1170
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	9 cut(s)	473, 493, 634, 698, 771, 798, 1185, 1472, 1486
CviQI	GTAC	6 cut(s)	249, 288, 583, 757, 789, 1170
DdeI	CTNAG	5 cut(s)	510, 1252, 1363, 1385, 1418
DpnI	GATC	7 cut(s)	315, 468, 673, 906, 1105, 1361, 1383
DpnII	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
DraI	TTTAAA	3 cut(s)	327, 1002, 1134
DraIII	CACNNNGTG	1 cut(s)	683
DrdI	GACNNNNNNGTC	1 cut(s)	878
DseDI	GACNNNNNNGTC	1 cut(s)	878
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	1203
EarI	CTCTTC	1 cut(s)	1203
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	230, 801
Eco81I	CCTNAGG	1 cut(s)	510
Eco88I	CYCGRG	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	1311
EcoO109I	RGGNCCY	2 cut(s)	224, 1505
EcoO65I	GGTNACC	1 cut(s)	590
EcoRII	CCWGG	3 cut(s)	29, 194, 226
EcoT14I	CCWWGG	1 cut(s)	233
EcoT22I	ATGCAT	3 cut(s)	156, 772, 1529
ErhI	CCWWGG	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	1447
FaeI	CATG	9 cut(s)	476, 496, 637, 701, 774, 801, 1188, 1475, 1489
FalI	AAGNNNNNCTT	2 cut(s)	1159, 1191
FaqI	GGGAC	1 cut(s)	1213
FatI	CATG	9 cut(s)	472, 492, 633, 697, 770, 797, 1184, 1471, 1485
FblI	GTMKAC	1 cut(s)	1477
Fnu4HI	GCNGC	4 cut(s)	702, 820, 935, 1500
FokI	GGATG	6 cut(s)	150, 425, 914, 1081, 1137, 1202
Fsp4HI	GCNGC	4 cut(s)	702, 820, 935, 1500
FspBI	CTAG	4 cut(s)	234, 479, 537, 1026
GluI	GCNGC	4 cut(s)	702, 820, 935, 1500
GsaI	CCCAGC	1 cut(s)	1234
GsuI	CTGGAG	2 cut(s)	165, 1392
HaeIII	GGCC	4 cut(s)	194, 226, 822, 1507
HapII	CCGG	2 cut(s)	681, 1520
Hin1II	CATG	9 cut(s)	476, 496, 637, 701, 774, 801, 1188, 1475, 1489
HincII	GTYRAC	1 cut(s)	1478
HindII	GTYRAC	1 cut(s)	1478
HindIII	AAGCTT	2 cut(s)	59, 457
HinfI	GANTC	9 cut(s)	69, 349, 782, 866, 1072, 1109, 1196, 1295, 1345
HpaII	CCGG	2 cut(s)	681, 1520
HphI	GGTGA	7 cut(s)	29, 526, 533, 602, 611, 626, 669
Hpy166II	GTNNAC	2 cut(s)	583, 1478
Hpy188III	TCNNGA	5 cut(s)	144, 479, 779, 914, 1409
Hpy8I	GTNNAC	2 cut(s)	583, 1478
HpyAV	CCTTC	7 cut(s)	31, 87, 387, 443, 511, 1011, 1317
HpyCH4III	ACNGT	8 cut(s)	161, 248, 253, 545, 587, 596, 756, 1464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	5 cut(s)	510, 1252, 1363, 1385, 1418
Hsp92II	CATG	9 cut(s)	476, 496, 637, 701, 774, 801, 1188, 1475, 1489
Kzo9I	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
LguI	GCTCTTC	1 cut(s)	1203
LmnI	GCTCC	3 cut(s)	302, 1031, 1433
Lsp1109I	GCAGC	3 cut(s)	713, 946, 1486
LweI	GCATC	3 cut(s)	564, 757, 1159
MaeI	CTAG	4 cut(s)	234, 479, 537, 1026
MaeIII	GTNAC	4 cut(s)	208, 590, 859, 962
MalI	GATC	7 cut(s)	315, 468, 673, 906, 1105, 1361, 1383
MboI	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
MflI	RGATCY	3 cut(s)	671, 1359, 1381
MhlI	GDGCHC	2 cut(s)	96, 1438
MluCI	AATT	7 cut(s)	178, 422, 984, 1037, 1334, 1368, 1389
MlyI	GAGTC	3 cut(s)	343, 860, 1354
MmeI	TCCRAC	1 cut(s)	724
Mph1103I	ATGCAT	3 cut(s)	156, 772, 1529
MseI	TTAA	7 cut(s)	177, 326, 1001, 1041, 1133, 1329, 1337
MslI	CAYNNNNRTG	3 cut(s)	159, 407, 1049
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	681, 1520
MspR9I	CCNGG	5 cut(s)	31, 196, 228, 681, 1520
Mva1269I	GAATGC	2 cut(s)	1213, 1234
MvaI	CCWGG	3 cut(s)	31, 196, 228
MwoI	GCNNNNNNNGC	1 cut(s)	698
NciI	CCSGG	2 cut(s)	681, 1520
NdeII	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
NlaIII	CATG	9 cut(s)	476, 496, 637, 701, 774, 801, 1188, 1475, 1489
NlaIV	GGNNCC	2 cut(s)	298, 803
NmuCI	GTSAC	1 cut(s)	590
NsiI	ATGCAT	3 cut(s)	156, 772, 1529
NspI	RCATGY	2 cut(s)	476, 1489
NspV	TTCGAA	1 cut(s)	1178
OliI	CACNNNNGTG	2 cut(s)	407, 1049
PaeI	GCATGC	1 cut(s)	1489
PciSI	GCTCTTC	1 cut(s)	1203
PctI	GAATGC	2 cut(s)	1213, 1234
PfeI	GAWTC	6 cut(s)	69, 782, 1072, 1109, 1196, 1295
PflFI	GACNNNGTC	1 cut(s)	649
PflMI	CCANNNNNTGG	3 cut(s)	345, 362, 498
PkrI	GCNGC	4 cut(s)	703, 821, 936, 1501
PleI	GAGTC	3 cut(s)	343, 860, 1353
PpsI	GAGTC	3 cut(s)	343, 860, 1353
Psp6I	CCWGG	3 cut(s)	29, 194, 226
PspEI	GGTNACC	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	1230
PspGI	CCWGG	3 cut(s)	29, 194, 226
PspN4I	GGNNCC	2 cut(s)	298, 803
PspPI	GGNCC	4 cut(s)	224, 230, 801, 1505
PstI	CTGCAG	1 cut(s)	1504
PsuI	RGATCY	3 cut(s)	671, 1359, 1381
PsyI	GACNNNGTC	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	6 cut(s)	250, 289, 584, 758, 790, 1171
RsaNI	GTAC	6 cut(s)	249, 288, 583, 757, 789, 1170
RseI	CAYNNNNRTG	3 cut(s)	159, 407, 1049
SalI	GTCGAC	1 cut(s)	1476
SapI	GCTCTTC	1 cut(s)	1203
SaqAI	TTAA	7 cut(s)	177, 326, 1001, 1041, 1133, 1329, 1337
SatI	GCNGC	4 cut(s)	702, 820, 935, 1500
Sau3AI	GATC	7 cut(s)	313, 466, 671, 904, 1103, 1359, 1381
Sau96I	GGNCC	4 cut(s)	224, 230, 801, 1505
ScaI	AGTACT	1 cut(s)	790
SchI	GAGTC	3 cut(s)	343, 860, 1354
ScrFI	CCNGG	5 cut(s)	31, 196, 228, 681, 1520
SduI	GDGCHC	2 cut(s)	96, 1438
SfaNI	GCATC	3 cut(s)	564, 757, 1159
SfcI	CTRYAG	2 cut(s)	1077, 1500
SfuI	TTCGAA	1 cut(s)	1178
SinI	GGWCC	2 cut(s)	230, 801
SmiMI	CAYNNNNRTG	3 cut(s)	159, 407, 1049
SphI	GCATGC	1 cut(s)	1489
Sse9I	AATT	7 cut(s)	178, 422, 984, 1037, 1334, 1368, 1389
SsiI	CCGC	2 cut(s)	366, 819
SspMI	CTAG	4 cut(s)	234, 479, 537, 1026
StyD4I	CCNGG	5 cut(s)	29, 194, 226, 679, 1518
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	8 cut(s)	161, 248, 253, 545, 587, 596, 756, 1464
TaqI	TCGA	5 cut(s)	352, 810, 915, 1178, 1477
TasI	AATT	7 cut(s)	178, 422, 984, 1037, 1334, 1368, 1389
TatI	WGTACW	1 cut(s)	788
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	6 cut(s)	69, 782, 1072, 1109, 1196, 1295
Tru1I	TTAA	7 cut(s)	177, 326, 1001, 1041, 1133, 1329, 1337
Tru9I	TTAA	7 cut(s)	177, 326, 1001, 1041, 1133, 1329, 1337
TscAI	CASTG	2 cut(s)	166, 856
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	3 cut(s)	701, 934, 1499
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	7 cut(s)	198, 432, 786, 1227, 1310, 1460, 1460
TspRI	CASTG	2 cut(s)	166, 856
Tth111I	GACNNNGTC	1 cut(s)	649
Van91I	CCANNNNNTGG	3 cut(s)	345, 362, 498
VpaK11BI	GGWCC	2 cut(s)	230, 801
XagI	CCTNNNNNAGG	1 cut(s)	1311
XapI	RAATTY	4 cut(s)	984, 1037, 1368, 1389
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	2 cut(s)	476, 1489
XmaJI	CCTAGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	1477
XspI	CTAG	4 cut(s)	234, 479, 537, 1026
ZrmI	AGTACT	1 cut(s)	790
Zsp2I	ATGCAT	3 cut(s)	156, 772, 1529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.