Rmu_sc0000006.1_g000008

Baculoviral IAP repeat containing 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000006.1
OG0016449
Physical Location & Seq
Reverse (-)
30120 .. 32685
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
atgattgatatgcgattcatttcggagcaggatatcaaaatgtggttcaaaagccgtgctttaaaacacaacatcgtgtctaaaagaaagtgttttagaggggcatcattgactgcaaagcaatatgcagaaacttcaaagggccttcaacgcgacaaaactgccaataactactgccctgagtgtgggttccggctgttggagtgtgcaataagaaaccagcacaccgatatgattgagttgttgcttaagaatggagctgaaatttttcgagataatgacattggaagaggcattgagacaatggacgccttagttaagcttggttataaagaagttgaaggcgagtttttgtacacttcaagctctgtggggagattcaacgtttgggctaccttttcagtcaaaaatcgtgggattgctatattttatggtggcaagagtcgaatgaatgtccagggcaaggaaccagatgtgtatttcgcatggggcaaggctactttcaagcaggaaggatctgtgttacggatcaaagatggattggagacttccttgctggaaccagcagaacctccatatttgggtagcaaagagatattctactggttttgcaaccagttaaatgaggctattggtttgggttctgtggtggatgatggctttgatctctcggatatagagatggcactcaaagcttcactggaccattttggacagccatcttcacagccttcaatggctgttggtttgggttctgtggtggatgatgggtttgatctctctgatatagagatggcactcaaagcttcattggaccattttggacagacatctttacagccttctgcaccacctttgcccgaagatgactgcaccatctgttttgatcatagagttgacactgcctttgttccctgtggtcatcttatctgctcaccatgtgcagaaaagattcagcatcagaacttgctgtgtcccttctgccatgaggtggtggagaactttgcaattcctaggatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000187 GO:0000209 GO:0001932 GO:0001934 GO:0002020 GO:0002225 GO:0002682 GO:0002684 GO:0002697 GO:0002699 GO:0002700 GO:0002702 GO:0002759 GO:0002760 GO:0002784 GO:0002786 GO:0002803 GO:0002805 GO:0002807 GO:0002808 GO:0002813 GO:0002831 GO:0002833 GO:0002920 GO:0002922 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005815 GO:0005829 GO:0005856 GO:0006464 GO:0006468 GO:0006508 GO:0006511 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006963 GO:0006964 GO:0007154 GO:0007165 GO:0007166 GO:0007254 GO:0007257 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010466 GO:0010468 GO:0010562 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0012505 GO:0015630 GO:0016310 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022416 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030163 GO:0030234 GO:0030414 GO:0031098 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031399 GO:0031401 GO:0031625 GO:0032101 GO:0032103 GO:0032147 GO:0032268 GO:0032269 GO:0032270 GO:0032386 GO:0032388 GO:0032446 GO:0032501 GO:0032502 GO:0032872 GO:0032874 GO:0032879 GO:0032880 GO:0033157 GO:0033158 GO:0033160 GO:0033554 GO:0033674 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0042127 GO:0042306 GO:0042307 GO:0042325 GO:0042327 GO:0042742 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043086 GO:0043154 GO:0043167 GO:0043169 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043281 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043506 GO:0043507 GO:0043549 GO:0043632 GO:0043900 GO:0043902 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045859 GO:0045860 GO:0045861 GO:0045937 GO:0046328 GO:0046330 GO:0046822 GO:0046824 GO:0046872 GO:0046914 GO:0048471 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050829 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051338 GO:0051346 GO:0051347 GO:0051403 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0060548 GO:0061057 GO:0061134 GO:0061135 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070201 GO:0070228 GO:0070247 GO:0070302 GO:0070304 GO:0070534 GO:0070613 GO:0070647 GO:0070936 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0080135 GO:0089720 GO:0090087 GO:0090316 GO:0097340 GO:0097341 GO:0098542 GO:0098772 GO:0140096 GO:1900180 GO:1900182 GO:1900424 GO:1900426 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951 GO:1990001 GO:2000106 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
ko01524 ko04064 ko04120 ko04210 ko04214 ko04215 ko04217 ko04510 ko04621 ko04624 ko04668 ko05145 ko05166 ko05200 ko05222 map01524 map04064 map04120 map04210 map04214 map04215 map04217 map04510 map04621 map04624 map04668 map05145 map05166 map05200 map05222
Pfam Domains
Protein Families
BIR zf-C3HC4_3

Protein Analysis

340

Amino Acids

37.99

Weight (kDa)

5.36

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 289 - 334 6.7e-12 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 991
AccII CGCG 1 cut(s) 153
AclI AACGTT 1 cut(s) 384
AclWI GGATC 2 cut(s) 523, 536
AcsI RAATTY 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 309
AdeI CACNNNGTG 1 cut(s) 941
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 5 cut(s) 185, 199, 463, 581, 991
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 8 cut(s) 49, 138, 149, 341, 363, 382, 505, 735
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 5 cut(s) 260, 322, 366, 695, 806
AluI AGCT 5 cut(s) 260, 322, 366, 695, 806
Alw26I GTCTC 2 cut(s) 293, 539
AlwI GGATC 2 cut(s) 523, 536
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
Asp700I GAANNNNTTC 2 cut(s) 267, 951
AspA2I CCTAGG 1 cut(s) 1013
AspS9I GGNCC 3 cut(s) 142, 703, 814
AsuHPI GGTGA 1 cut(s) 927
AvaII GGWCC 2 cut(s) 703, 814
AvrII CCTAGG 1 cut(s) 1013
BccI CCATC 7 cut(s) 530, 650, 676, 727, 761, 787, 884
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 458
BclI TGATCA 1 cut(s) 886
BcoDI GTCTC 2 cut(s) 293, 539
BfaI CTAG 1 cut(s) 1014
BfrI CTTAAG 1 cut(s) 248
BlnI CCTAGG 1 cut(s) 1013
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 2 cut(s) 703, 814
BmgT120I GGNCC 3 cut(s) 142, 703, 814
BmiI GGNNCC 3 cut(s) 191, 468, 561
BmrFI CCNGG 1 cut(s) 458
BmsI GCATC 2 cut(s) 113, 967
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 2 cut(s) 457, 1013
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 199, 463, 581, 991
Bse1I ACTGG 3 cut(s) 608, 616, 705
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 457, 1013
BseGI GGATG 2 cut(s) 658, 769
BseLI CCNNNNNNNGG 5 cut(s) 185, 199, 463, 581, 991
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 3 cut(s) 608, 616, 705
BsgI GTGCAG 3 cut(s) 831, 856, 963
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 5 cut(s) 185, 199, 463, 581, 991
BsmAI GTCTC 2 cut(s) 293, 539
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 5 cut(s) 515, 528, 664, 775, 886
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 3 cut(s) 191, 468, 561
BspPI GGATC 2 cut(s) 523, 536
BspTI CTTAAG 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 3 cut(s) 608, 616, 705
BssECI CCNNGG 2 cut(s) 457, 1013
BssMI GATC 5 cut(s) 515, 528, 664, 775, 886
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 1013
Bst2UI CCWGG 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 180, 313
BstF5I GGATG 2 cut(s) 658, 769
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 5 cut(s) 518, 531, 667, 778, 889
BstMAI GTCTC 2 cut(s) 293, 539
BstMBI GATC 5 cut(s) 515, 528, 664, 775, 886
BstMWI GCNNNNNNNGC 3 cut(s) 150, 692, 803
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 456
BstUI CGCG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 658, 769
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 2 cut(s) 698, 900
Cfr13I GGNCC 3 cut(s) 142, 703, 814
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 355
CspCI CAANNNNNGTGG 4 cut(s) 351, 386, 394, 429
CviAII CATG 3 cut(s) 486, 939, 986
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 180, 313
DpnI GATC 5 cut(s) 517, 530, 666, 777, 888
DpnII GATC 5 cut(s) 515, 528, 664, 775, 886
DraI TTTAAA 1 cut(s) 63
DraIII CACNNNGTG 1 cut(s) 941
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 1013
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 703, 814
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 456
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1013
FaeI CATG 3 cut(s) 489, 942, 989
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FaqI GGGAC 1 cut(s) 960
FatI CATG 3 cut(s) 485, 938, 985
FbaI TGATCA 1 cut(s) 886
FokI GGATG 2 cut(s) 665, 776
FspBI CTAG 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 3 cut(s) 489, 942, 989
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HindIII AAGCTT 3 cut(s) 320, 693, 804
HinfI GANTC 4 cut(s) 15, 378, 442, 952
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 927
Hpy166II GTNNAC 2 cut(s) 357, 898
Hpy188I TCNGA 4 cut(s) 25, 673, 784, 963
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 2 cut(s) 357, 898
HpyAV CCTTC 6 cut(s) 155, 335, 506, 741, 852, 988
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 8 cut(s) 116, 128, 209, 612, 848, 873, 944, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 692, 803
HpyF3I CTNAG 2 cut(s) 180, 313
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 3 cut(s) 489, 942, 989
Ksp22I TGATCA 1 cut(s) 886
Kzo9I GATC 5 cut(s) 515, 528, 664, 775, 886
LmnI GCTCC 2 cut(s) 25, 257
LweI GCATC 2 cut(s) 113, 967
MaeI CTAG 1 cut(s) 1014
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 522
MalI GATC 5 cut(s) 517, 530, 666, 777, 888
MboI GATC 5 cut(s) 515, 528, 664, 775, 886
MboII GAAGA 3 cut(s) 300, 714, 875
MflI RGATCY 1 cut(s) 515
MluCI AATT 2 cut(s) 264, 1008
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 92, 284, 582, 619, 982
MroXI GAANNNNTTC 2 cut(s) 267, 951
MseI TTAA 4 cut(s) 62, 249, 318, 620
MslI CAYNNNNRTG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 458
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 150, 692, 803
NdeII GATC 5 cut(s) 515, 528, 664, 775, 886
NlaIII CATG 3 cut(s) 489, 942, 989
NlaIV GGNNCC 3 cut(s) 191, 468, 561
PdmI GAANNNNTTC 2 cut(s) 267, 951
PfeI GAWTC 3 cut(s) 15, 378, 952
PflMI CCANNNNNTGG 1 cut(s) 991
PleI GAGTC 1 cut(s) 450
PpsI GAGTC 1 cut(s) 450
PsiI TTATAA 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 191, 468, 561
PspPI GGNCC 3 cut(s) 142, 703, 814
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 4 cut(s) 62, 249, 318, 620
Sau3AI GATC 5 cut(s) 515, 528, 664, 775, 886
Sau96I GGNCC 3 cut(s) 142, 703, 814
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 1 cut(s) 458
SfaNI GCATC 2 cut(s) 113, 967
SinI GGWCC 2 cut(s) 703, 814
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 264, 1008
SspMI CTAG 1 cut(s) 1014
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 1013
TaiI ACGT 1 cut(s) 387
TaqI TCGA 2 cut(s) 271, 445
TasI AATT 2 cut(s) 264, 1008
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 3 cut(s) 15, 378, 952
Tru1I TTAA 4 cut(s) 62, 249, 318, 620
Tru9I TTAA 4 cut(s) 62, 249, 318, 620
TscAI CASTG 2 cut(s) 705, 907
TspDTI ATGAA 3 cut(s) 7, 464, 798
TspGWI ACGGA 1 cut(s) 541
TspRI CASTG 2 cut(s) 705, 907
Van91I CCANNNNNTGG 1 cut(s) 991
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 703, 814
XapI RAATTY 1 cut(s) 264
XmaJI CCTAGG 1 cut(s) 1013
XmnI GAANNNNTTC 2 cut(s) 267, 951
XspI CTAG 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.