Rmu_sc0000103.1_g000062

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000103.1
Physical Location & Seq
Reverse (-)
316506 .. 317073
568 bp
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UTR
Exon/CDS
Intron
Rmu_sc0000103.1_g000062.1.cds

Sequence Viewer

Length: 237 bp
atggctgattgggagaatacatcaccaaagcaagttgaaataccctttaagcctgctcgtgacttcactggagtaccagctgtgattgaccttgcatgtatctgggatgccatggaggagcttggaaatgatcccaacaagataaatccattggttcctgtagaccttgttgtcgatcattcggttacagttgatgtagcaagaactgtagatgcactacaggaaaatatggaatga
Functional Annotation

Protein Analysis

78

Amino Acids

8.63

Weight (kDa)

4.12

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018719)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26970
malus_domestica MD03G1199800.v1.1
rosa_multiflora Rmu_sc0000103.1_g000062
rosa_roxburghii Rroxscaffold_1G00041170
rosa_samantha Rh5AG270700 Rh5BG273700 Rh5BG273800 Rh5CG306800
rosa_wichuraiana Rw5G025260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 162
AclWI GGATC 1 cut(s) 125
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 1 cut(s) 38
AluBI AGCT 2 cut(s) 80, 121
AluI AGCT 2 cut(s) 80, 121
AlwI GGATC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 15
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BauI CACGAG 1 cut(s) 57
BfmI CTRYAG 3 cut(s) 159, 207, 218
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 97, 202
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 111
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 73
BseRI GAGGAG 1 cut(s) 131
Bsp143I GATC 2 cut(s) 130, 175
Bsp19I CCATGG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 130, 175
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 190, 208
BstC8I GCNNGC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 133, 178
BstMBI GATC 2 cut(s) 130, 175
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 3 cut(s) 159, 207, 218
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 74
CviAII CATG 2 cut(s) 96, 112
CviJI RGCY 4 cut(s) 5, 52, 80, 121
CviKI_1 RGCY 4 cut(s) 5, 52, 80, 121
CviQI GTAC 1 cut(s) 74
DpnI GATC 2 cut(s) 132, 177
DpnII GATC 2 cut(s) 130, 175
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 99, 115
FaiI YATR 3 cut(s) 97, 113, 230
FatI CATG 2 cut(s) 95, 111
FblI GTMKAC 1 cut(s) 162
FokI GGATG 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 90
Hin1II CATG 2 cut(s) 99, 115
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 190, 208
HpyCH4V TGCA 2 cut(s) 95, 215
Hsp92II CATG 2 cut(s) 99, 115
Kzo9I GATC 2 cut(s) 130, 175
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 54, 66, 88, 90, 171, 206
LweI GCATC 2 cut(s) 97, 202
MaeIII GTNAC 2 cut(s) 59, 184
MalI GATC 2 cut(s) 132, 177
MboI GATC 2 cut(s) 130, 175
MnlI CCTC 1 cut(s) 109
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 111
NdeII GATC 2 cut(s) 130, 175
NlaIII CATG 2 cut(s) 99, 115
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 156
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 2 cut(s) 130, 175
SetI ASST 4 cut(s) 82, 93, 123, 168
SfaNI GCATC 2 cut(s) 97, 202
SfcI CTRYAG 3 cut(s) 159, 207, 218
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 190, 208
TaqI TCGA 1 cut(s) 174
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspRI CASTG 1 cut(s) 73
XceI RCATGY 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.