Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018719

Physical Location & Seq

Genomic Coordinates Forward (+)

58933074 .. 58938300

Gene Structure 5227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCACTTTCTTACAACCCCGCCACATTTTCTTCTCCTTCGTCATCATCGTGGGGCACTTCACCAAAACCCAAGCAAATGAAGCAGTGTACATGCTGGCCACGTCAACATGTTTGTTTCCGGAGTGCTTTTCTCTTCCTCGCTCTCCAAAATCTCACCGACGTCGTTTTTGCACCGCTCTCTCGGCTTCTTGTCCGCTCTTCCGTCTCCGGGCTGCTCCGCCGTGCTCCTGAACCACCGACTCTATTGGAAATCTCCGTTGTTTGCCTTTCCTCGTGTGTTGCGGACAGGCTTCCATATTTAATAAAGATACTTTTGGAATCTGCAATCCGTTACTGTGACGACTTCCAAATTACCAAGGAAGATGTTGAAAAGATAGCTGATTGGGAGAATACATCACCAAAGCAAGTTGAAATACCCTTCAAGCCTCGCTCGTGTTCTCCTCCAGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0003994 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006082 GO:0006101 GO:0006102 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031090 GO:0031667 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033993 GO:0035639 GO:0036094 GO:0042221 GO:0042594 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048856 GO:0050896 GO:0071704 GO:0071944 GO:0072350 GO:0090351 GO:0097159 GO:0097305 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700 GO:1990641

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

151

Amino Acids

16.93

Weight (kDa)

8.9

Isoelectric Point (pI)

74.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26970
malus_domestica	MD03G1199800.v1.1
rosa_multiflora	Rmu_sc0000103.1_g000062
rosa_roxburghii	Rroxscaffold_1G00041170
rosa_samantha	Rh5AG270700 Rh5BG273700 Rh5BG273800 Rh5CG306800
rosa_wichuraiana	Rw5G025260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccBSI	CCGCTC	2 cut(s)	178, 198
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	5 cut(s)	21, 176, 196, 220, 284
AcoI	YGGCCR	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	371, 413, 424
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	214
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	54, 148, 390
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	100
BauI	CACGAG	2 cut(s)	274, 433
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	2 cut(s)	211, 447
BmgBI	CACGTC	1 cut(s)	104
BmrFI	CCNGG	2 cut(s)	211, 447
BpmI	CTGGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	357, 446
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	357, 446
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	121, 210
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	59, 229
Bsp13I	TCCGGA	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	89
BspACI	CCGC	5 cut(s)	21, 176, 196, 220, 284
BspANI	GGCC	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	205
BsrBI	CCGCTC	2 cut(s)	178, 198
BsrGI	TGTACA	1 cut(s)	89
BssECI	CCNNGG	2 cut(s)	357, 446
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	2 cut(s)	274, 433
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	2 cut(s)	274, 433
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	140, 205
BstACI	GRCGYC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 184
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	96, 113
BstSCI	CCNGG	2 cut(s)	209, 445
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	100
BtrI	CACGTC	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	93, 110
CviJI	RGCY	6 cut(s)	100, 187, 214, 292, 380, 427
CviKI_1	RGCY	6 cut(s)	100, 187, 214, 292, 380, 427
CviQI	GTAC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	140, 205
EarI	CTCTTC	2 cut(s)	140, 205
EciI	GGCGGA	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	2 cut(s)	96, 113
FaiI	YATR	3 cut(s)	94, 111, 298
FatI	CATG	2 cut(s)	92, 109
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	2 cut(s)	121, 210
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	96, 113
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HinfI	GANTC	2 cut(s)	241, 320
HpaII	CCGG	2 cut(s)	121, 210
HphI	GGTGA	3 cut(s)	54, 148, 390
Hpy166II	GTNNAC	2 cut(s)	90, 107
Hpy188III	TCNNGA	2 cut(s)	121, 230
Hpy8I	GTNNAC	2 cut(s)	90, 107
Hpy99I	CGWCG	2 cut(s)	164, 167
HpyAV	CCTTC	2 cut(s)	48, 430
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	103, 162
HpyCH4V	TGCA	2 cut(s)	173, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 184
HpySE526I	ACGT	2 cut(s)	103, 162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	96, 113
Kpn2I	TCCGGA	1 cut(s)	120
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	222, 232
LpnPI	CCDG	6 cut(s)	82, 134, 223, 243, 274, 432
Lsp1109I	GCAGC	1 cut(s)	201
MaeII	ACGT	2 cut(s)	103, 162
MaeIII	GTNAC	2 cut(s)	332, 338
MbiI	CCGCTC	2 cut(s)	178, 198
MboII	GAAGA	4 cut(s)	24, 127, 192, 374
MhlI	GDGCHC	2 cut(s)	59, 229
MlsI	TGGCCA	1 cut(s)	100
MluCI	AATT	1 cut(s)	351
MluNI	TGGCCA	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	149, 283, 438, 453
Mox20I	TGGCCA	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	100
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	100
MspI	CCGG	2 cut(s)	121, 210
MspR9I	CCNGG	2 cut(s)	211, 447
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	82, 184
NciI	CCSGG	1 cut(s)	211
NlaIII	CATG	2 cut(s)	96, 113
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	2 cut(s)	96, 113
PciI	ACATGT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PscI	ACATGT	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	211, 447
SduI	GDGCHC	2 cut(s)	59, 229
SetI	ASST	3 cut(s)	106, 165, 382
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	5 cut(s)	21, 176, 196, 220, 284
StyD4I	CCNGG	2 cut(s)	209, 445
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	106, 165
TasI	AATT	1 cut(s)	351
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	3 cut(s)	193, 247, 320
TspRI	CASTG	1 cut(s)	92
XceI	RCATGY	2 cut(s)	96, 113
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.