Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018719

Physical Location & Seq

Genomic Coordinates Reverse (-)

34481046 .. 34482168

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG273800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTTGTTTCCAGAGTGCCTTTCTCTTCCTCGCTCTCCATAATCTCACCGACGTCGTTTTTGCACCGCTCTATCAGCTTCTTGTCCGCTCTTCCGTCTCTGGGCTGCTCCGCCGTGCTCCGGAACCACCGACTCTATCGGAAATCTCCGGTTAGCTTCCTTGCTCATCAAACAACTGCCCCACCACTCATCCACCACCGCTTCCGGCCAAACATGGCCGCCACTGCTTCTCAACATGCTTTTGAGGGAATATTAAACAGTCTCCCAAAGCCTGGAGGTGGCAAATTCGGAAAATTTTACAGTCTACCTGCTCTAAATGATCCAAGAATTGACAGGCTTCCATATTCAATAAAGATACTTTTGGAATCTGCAATCCGTAACTGTGACAACTTCCAAATTACACAAGGAAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Aconitase Aconitase_C

Protein Analysis

138

Amino Acids

15.31

Weight (kDa)

10.67

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26970
malus_domestica	MD03G1199800.v1.1
rosa_multiflora	Rmu_sc0000103.1_g000062
rosa_roxburghii	Rroxscaffold_1G00041170
rosa_samantha	Rh5AG270700 Rh5BG273700 Rh5BG273800 Rh5CG306800
rosa_wichuraiana	Rw5G025260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccBSI	CCGCTC	2 cut(s)	69, 89
AccI	GTMKAC	1 cut(s)	304
AccIII	TCCGGA	1 cut(s)	120
AciI	CCGC	5 cut(s)	67, 87, 111, 199, 219
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	2 cut(s)	206, 216
AcsI	RAATTY	2 cut(s)	284, 293
AcyI	GRCGYC	1 cut(s)	53
AfiI	CCNNNNNNNGG	4 cut(s)	101, 120, 272, 278
AgsI	TTSAA	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	78, 156
AluI	AGCT	2 cut(s)	78, 156
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	102, 266
AlwI	GGATC	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	120
AoxI	GGCC	2 cut(s)	206, 216
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	284, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AsuHPI	GGTGA	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	102, 266
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	106, 219
BlsI	GCNGC	2 cut(s)	107, 220
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	53
BsaWI	WCCGGW	2 cut(s)	120, 148
Bsc4I	CCNNNNNNNGG	4 cut(s)	101, 120, 272, 278
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	101, 120, 272, 278
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	2 cut(s)	208, 218
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	3 cut(s)	121, 149, 205
BslI	CCNNNNNNNGG	4 cut(s)	101, 120, 272, 278
BsmAI	GTCTC	2 cut(s)	102, 266
BsmBI	CGTCTC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	208, 218
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	5 cut(s)	67, 87, 111, 199, 219
BspANI	GGCC	2 cut(s)	208, 218
BspEI	TCCGGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	96
BsrBI	CCGCTC	2 cut(s)	69, 89
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	260, 302, 383
Bst6I	CTCTTC	2 cut(s)	31, 96
BstACI	GRCGYC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	2 cut(s)	102, 266
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 224
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	208, 218
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	316
CviAII	CATG	2 cut(s)	214, 236
CviJI	RGCY	7 cut(s)	78, 105, 156, 208, 218, 271, 337
CviKI_1	RGCY	7 cut(s)	78, 105, 156, 208, 218, 271, 337
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	2 cut(s)	206, 216
Eam1104I	CTCTTC	2 cut(s)	31, 96
EarI	CTCTTC	2 cut(s)	31, 96
EciI	GGCGGA	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	2 cut(s)	217, 239
FaiI	YATR	4 cut(s)	41, 215, 237, 343
FatI	CATG	2 cut(s)	213, 235
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	106, 219
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	106, 219
GluI	GCNGC	2 cut(s)	106, 219
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	208, 218
HapII	CCGG	3 cut(s)	121, 149, 205
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	217, 239
HinfI	GANTC	2 cut(s)	132, 365
HpaII	CCGG	3 cut(s)	121, 149, 205
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	141, 290
Hpy188III	TCNNGA	2 cut(s)	12, 121
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyCH4III	ACNGT	3 cut(s)	260, 302, 383
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	64, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 224
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	217, 239
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	319
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	2 cut(s)	113, 123
LpnPI	CCDG	9 cut(s)	25, 86, 134, 162, 218, 258, 285, 319, 321
Lsp1109I	GCAGC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	377, 383
MalI	GATC	1 cut(s)	321
MbiI	CCGCTC	2 cut(s)	69, 89
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	18, 83
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	4 cut(s)	284, 293, 327, 396
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	40, 238, 269
MroI	TCCGGA	1 cut(s)	120
MseI	TTAA	1 cut(s)	254
MspI	CCGG	3 cut(s)	121, 149, 205
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	75, 224
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	217, 239
NlaIV	GGNNCC	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	107, 220
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	106, 219
Sau3AI	GATC	1 cut(s)	319
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	5 cut(s)	56, 80, 158, 280, 310
Sse9I	AATT	4 cut(s)	284, 293, 327, 396
SsiI	CCGC	5 cut(s)	67, 87, 111, 199, 219
SspI	AATATT	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	260, 302, 383
TaiI	ACGT	1 cut(s)	56
TasI	AATT	4 cut(s)	284, 293, 327, 396
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	105
Tsp45I	GTSAC	1 cut(s)	383
TspGWI	ACGGA	2 cut(s)	84, 365
TspRI	CASTG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	284, 293
XceI	RCATGY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	304
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.