Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000131.1

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Forward (+)

205124 .. 207775

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgagtatggtgaagagtcaaggcagctccgtcgcggcgatgcgtaccctctcttcttcctccgccacttctcgctgttccactcaacgttccgccgctaattctttttcctcaggagattcggttgaagaagcaaaaattgtggttgcttattatgttgctgaaatgctttcatatgacacgaattgtggtacgccaacatggatcgggaaggggcttacttgtgtttgcttcaaggcaaagggaaattatgaaagggtctgcttgaatctgacacccctgcaggaggaaaggatgagaaggttgcagcgccggatgaagatttactttgattcttctaggccagatcaccaggaagcgctgagagctctatggtatgctacatatcccagtcaagagcttcatggcttggtatctgatcagtggaaagagatgggatggcagggaagagatccatctactgatttcagaggtgctggatttatttctttggagaacctcttgttcttcgcaaagacattttcgacatctttccagtgcctattgaacaagcaaggaggaaagccagctgcttgggaatatccatttgctgttgccggtgtaaatattacatttatgatcatgcaaatgcttgacctcgaagccacgaaaccaaggtcctttatcagggcagttttcttacagatgttgttagaaagcgagtgggcttttgacttgctctattgcgtcgccttcatggttatggataaacagtggcttgagagaaatgctacatacatggaattcaatgatgttttgaaatcaactcgagctcaattggagagggaattactaatggacgatgtcttgcggattgaagacatgccatcttacagccttcttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

295

Amino Acids

33.71

Weight (kDa)

6.21

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	101 - 266	1.5e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	35, 63, 93, 96, 850
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	2 cut(s)	212, 446
AcsI	RAATTY	1 cut(s)	782
AfaI	GTAC	2 cut(s)	46, 193
AfeI	AGCGCT	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	286, 666
AgsI	TTSAA	7 cut(s)	128, 235, 268, 547, 787, 799, 857
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	5 cut(s)	27, 368, 400, 569, 812
AluI	AGCT	5 cut(s)	27, 368, 400, 569, 812
Alw21I	GWGCWC	2 cut(s)	370, 814
AlwI	GGATC	2 cut(s)	212, 446
Ama87I	CYCGRG	1 cut(s)	807
Aor51HI	AGCGCT	1 cut(s)	360
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	24, 307, 569
ApoI	RAATTY	1 cut(s)	782
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AspLEI	GCGC	2 cut(s)	312, 361
AspS9I	GGNCC	1 cut(s)	657
AsuHPI	GGTGA	2 cut(s)	22, 341
AvaI	CYCGRG	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	657
AxyI	CCTNAGG	1 cut(s)	112
BanII	GRGCYC	2 cut(s)	370, 814
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	2 cut(s)	370, 814
BbvI	GCAGC	3 cut(s)	36, 319, 556
BccI	CCATC	4 cut(s)	427, 432, 463, 874
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	353
BclI	TGATCA	2 cut(s)	418, 618
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	281
BfoI	RGCGCY	2 cut(s)	313, 362
BisI	GCNGC	5 cut(s)	25, 36, 96, 308, 570
BlsI	GCNGC	5 cut(s)	26, 37, 97, 309, 571
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	1 cut(s)	807
BmgT120I	GGNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 666
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	390, 535
Bse21I	CCTNAGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	3 cut(s)	300, 321, 443
BseLI	CCNNNNNNNGG	2 cut(s)	286, 666
BseMII	CTCAG	2 cut(s)	126, 353
BseNI	ACTGG	2 cut(s)	390, 535
BseXI	GCAGC	3 cut(s)	36, 319, 556
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	370, 814
BsiHKCI	CYCGRG	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	313, 597
BslI	CCNNNNNNNGG	2 cut(s)	286, 666
BsnI	GGCC	1 cut(s)	343
BsoBI	CYCGRG	1 cut(s)	807
Bsp1286I	GDGCHC	2 cut(s)	370, 814
Bsp143I	GATC	5 cut(s)	204, 346, 418, 451, 618
BspACI	CCGC	5 cut(s)	35, 63, 93, 96, 850
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	125, 354
BspFNI	CGCG	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	285
BspPI	GGATC	2 cut(s)	212, 446
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	390, 535
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	5 cut(s)	204, 346, 418, 451, 618
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	3 cut(s)	8, 58, 442
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	2 cut(s)	112, 362
BstENI	CCTNNNNNAGG	2 cut(s)	284, 664
BstF5I	GGATG	3 cut(s)	300, 321, 443
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	2 cut(s)	313, 362
BstHHI	GCGC	2 cut(s)	312, 361
BstKTI	GATC	5 cut(s)	207, 349, 421, 454, 621
BstMBI	GATC	5 cut(s)	204, 346, 418, 451, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	36, 319, 556
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	451
Bsu36I	CCTNAGG	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	300, 321, 443
BtsIMutI	CAGTG	3 cut(s)	428, 542, 758
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	2 cut(s)	312, 361
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	657
CseI	GACGC	1 cut(s)	715
Csp6I	GTAC	2 cut(s)	45, 192
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	6 cut(s)	201, 404, 622, 736, 778, 862
CviQI	GTAC	2 cut(s)	45, 192
DdeI	CTNAG	2 cut(s)	112, 362
DpnI	GATC	5 cut(s)	206, 348, 420, 453, 620
DpnII	GATC	5 cut(s)	204, 346, 418, 451, 618
Eam1104I	CTCTTC	3 cut(s)	8, 58, 442
EarI	CTCTTC	3 cut(s)	8, 58, 442
EciI	GGCGGA	2 cut(s)	52, 82
Ecl136II	GAGCTC	2 cut(s)	368, 812
Eco130I	CCWWGG	1 cut(s)	653
Eco24I	GRGCYC	2 cut(s)	370, 814
Eco47I	GGWCC	1 cut(s)	657
Eco47III	AGCGCT	1 cut(s)	360
Eco53kI	GAGCTC	2 cut(s)	368, 812
Eco81I	CCTNAGG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	807
EcoICRI	GAGCTC	2 cut(s)	368, 812
EcoNI	CCTNNNNNAGG	2 cut(s)	284, 664
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	653
EcoT38I	GRGCYC	2 cut(s)	370, 814
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	6 cut(s)	204, 407, 625, 739, 781, 865
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	6 cut(s)	200, 403, 621, 735, 777, 861
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	2 cut(s)	418, 618
Fnu4HI	GCNGC	5 cut(s)	25, 36, 96, 308, 570
FokI	GGATG	3 cut(s)	307, 328, 450
FriOI	GRGCYC	2 cut(s)	370, 814
Fsp4HI	GCNGC	5 cut(s)	25, 36, 96, 308, 570
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	2 cut(s)	311, 360
GluI	GCNGC	5 cut(s)	25, 36, 96, 308, 570
HaeII	RGCGCY	2 cut(s)	313, 362
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	2 cut(s)	313, 597
HgaI	GACGC	1 cut(s)	715
HhaI	GCGC	2 cut(s)	312, 361
Hin1II	CATG	6 cut(s)	204, 407, 625, 739, 781, 865
Hin6I	GCGC	2 cut(s)	310, 359
HinP1I	GCGC	2 cut(s)	310, 359
HinfI	GANTC	4 cut(s)	16, 119, 268, 332
HpaII	CCGG	2 cut(s)	313, 597
HphI	GGTGA	2 cut(s)	22, 341
Hpy188I	TCNGA	3 cut(s)	273, 418, 470
Hpy188III	TCNNGA	3 cut(s)	114, 208, 395
Hpy99I	CGWCG	2 cut(s)	35, 731
HpyAV	CCTTC	4 cut(s)	205, 294, 742, 887
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	283, 307, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	112, 362
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	204, 407, 625, 739, 781, 865
HspAI	GCGC	2 cut(s)	310, 359
Ksp22I	TGATCA	2 cut(s)	418, 618
Kzo9I	GATC	5 cut(s)	204, 346, 418, 451, 618
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	3 cut(s)	36, 319, 556
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	88
MalI	GATC	5 cut(s)	206, 348, 420, 453, 620
MboI	GATC	5 cut(s)	204, 346, 418, 451, 618
MboII	GAAGA	9 cut(s)	25, 45, 48, 140, 327, 331, 459, 499, 869
MfeI	CAATTG	1 cut(s)	815
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	370, 814
MluCI	AATT	7 cut(s)	100, 138, 184, 247, 782, 815, 827
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	59, 70, 121, 280, 464, 509, 551, 647, 816
MslI	CAYNNNNRTG	2 cut(s)	626, 740
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	2 cut(s)	313, 597
MspR9I	CCNGG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	5 cut(s)	204, 346, 418, 451, 618
NlaIII	CATG	6 cut(s)	204, 407, 625, 739, 781, 865
NspI	RCATGY	1 cut(s)	865
PaeR7I	CTCGAG	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	119, 268, 332
PflFI	GACNNNGTC	1 cut(s)	842
PkrI	GCNGC	5 cut(s)	26, 37, 97, 309, 571
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	657
Psp124BI	GAGCTC	2 cut(s)	370, 814
Psp1406I	AACGTT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	657
PspPPI	RGGWCCY	1 cut(s)	657
PspXI	VCTCGAGB	1 cut(s)	807
PstI	CTGCAG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	451
PsyI	GACNNNGTC	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	2 cut(s)	46, 193
RsaNI	GTAC	2 cut(s)	45, 192
RseI	CAYNNNNRTG	2 cut(s)	626, 740
SacI	GAGCTC	2 cut(s)	370, 814
SatI	GCNGC	5 cut(s)	25, 36, 96, 308, 570
Sau3AI	GATC	5 cut(s)	204, 346, 418, 451, 618
Sau96I	GGNCC	1 cut(s)	657
SbfI	CCTGCAGG	1 cut(s)	285
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	353
SdaI	CCTGCAGG	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	370, 814
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	281
Sfr274I	CTCGAG	1 cut(s)	807
SinI	GGWCC	1 cut(s)	657
SlaI	CTCGAG	1 cut(s)	807
SmiMI	CAYNNNNRTG	2 cut(s)	626, 740
SmlI	CTYRAG	2 cut(s)	758, 807
SmoI	CTYRAG	2 cut(s)	758, 807
Sse8387I	CCTGCAGG	1 cut(s)	285
Sse9I	AATT	7 cut(s)	100, 138, 184, 247, 782, 815, 827
SsiI	CCGC	5 cut(s)	35, 63, 93, 96, 850
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	2 cut(s)	370, 814
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	524, 639, 808
TasI	AATT	7 cut(s)	100, 138, 184, 247, 782, 815, 827
TauI	GCSGC	2 cut(s)	38, 98
TfiI	GAWTC	3 cut(s)	119, 268, 332
TscAI	CASTG	3 cut(s)	428, 542, 758
TseI	GCWGC	3 cut(s)	24, 307, 569
TspDTI	ATGAA	5 cut(s)	162, 267, 332, 392, 724
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	3 cut(s)	428, 542, 758
Tth111I	GACNNNGTC	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	657
XagI	CCTNNNNNAGG	2 cut(s)	284, 664
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	1 cut(s)	865
XhoI	CTCGAG	1 cut(s)	807
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.