Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000174.1

Orthogroup ID

OG0007050

Physical Location & Seq

Genomic Coordinates Forward (+)

10162 .. 11541

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

atggtgaatggcactgctgttgggtctggtatggcttctgtggtgctgtttgaggctaacactctggctgttctcgccgaaatcatgtcagcaattttcgctgaagttatgcaaggaaagccggagtttacagaccacttgactcacaaactgaagcatcaccctggccagattgaagctgcagccataatggagcacattcttgatggaagctcatatgtgaaagaagcgaaaaaggttcacgaaatggaccctcttcaaaagcctaagcaagacagatatgctctaagaacctccccacaatggctaggccccctgattgaggtgatcagatcatcaaccaaaatgattgagagggagatcaactctgtcaacgacaatccattgatcgatgtctcaaggaacaaggctttacacggtggaaacttccaaggaaccccaattggtactgccatggacaacaccagactcgccattgcctcaattgggaaactcatatttgcacaattctctgagcttgtcaatgactactacaacaatggcttgccttccaacctctcaggtggcagcaaccctagtttggactacgggttcaaaggtgcagaaatcgcaatggcatcttactgctccgagcttcagtttcttgccaaccctgtgaccaaccatgtccaaagtgctgagcaacacaaccaagatgtcaactcattgggactgatctcctctaggaaaacatccgaggctgtcgacattttgaagctgatgtcatccactttcctagttgcattgtgccaagctattgatctcaggtatgtggaggagaacttgaagaacgttgtcaagaacactgtaagtaatgtagcaaagaggaccctgaccgttgcccccaacggtgatcttcacccctctcgattctccgagaaacacctgctctcagtcgtggaccgcgagtaccttttctcctacattgacgacccctgccttgccacttacccattgatgcagaaactgagggcagagctagttgaacatgctttgaataatggtgacaaagagaagagcacaaacacctccatcttccacaagattgctgctttcgaagaggaactgaagaatgtcctgccaagagaagtcgacaatgcgaggatcgaaattgagaatgggaaagcagagatcgcaaacaggatcaaggactgcaggtcttacccattgtacaggtttgtgagggaggaattggggactagtttgttgacaggtgagaaaaccaagtcgcctggagaagaatgtgacaaggtgttcaatgcaatctgcgccggaaagctcattgatcctctgctggagtgtttgaaggagtggaatggtgcccccctgcccatagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009636 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0016598 GO:0016829 GO:0016840 GO:0016841 GO:0019438 GO:0019538 GO:0019748 GO:0019941 GO:0030163 GO:0033993 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044550 GO:0045548 GO:0046677 GO:0046898 GO:0050896 GO:0051603 GO:0060992 GO:0071704 GO:0097305 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901654 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00360 ko00940 ko01100 ko01110 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

Lyase_aromatic

Protein Analysis

459

Amino Acids

50.71

Weight (kDa)

5.78

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_aromatic	PF00221	1 - 279	1.1e-89	Aromatic amino acid lyase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10340 AT5G04230 AT5G04230
fragaria_vesca	FvH4_7g19130
malus_domestica	MD01G1106900.v1.1 MD07G1172700.v1.1
prunus_persica	Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1 Prupe.2G211800_v2.0.a1
pyrus_communis	pycom01g13360 pycom07g16720
rosa_chinensis	RchiOBHm_Chr1g0363011
rosa_laevigata	RLG00000027602
rosa_multiflora	Rmu_co8466277.1_g000001 Rmu_sc0000174.1_g000003 Rmu_ssc0000356.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293550
rosa_rugosa	Rorug01G0303500 Rorug04G0330100 Rorug04G0330200
rosa_samantha	Rh1AG312500 Rh1BG275900 Rh1CG292700 Rh1DG306500
rosa_wichuraiana	Rw1G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	933
Acc36I	ACCTGC	2 cut(s)	933, 1185
AccB1I	GGYRCC	1 cut(s)	1358
AccI	GTMKAC	2 cut(s)	744, 1131
AccII	CGCG	1 cut(s)	945
AciI	CCGC	1 cut(s)	943
AclI	AACGTT	1 cut(s)	831
AclWI	GGATC	3 cut(s)	1151, 1190, 1319
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	4 cut(s)	123, 173, 620, 1127
AfaI	GTAC	3 cut(s)	448, 950, 1211
AfiI	CCNNNNNNNGG	4 cut(s)	303, 322, 486, 580
AgsI	TTSAA	9 cut(s)	176, 260, 595, 754, 826, 1025, 1036, 1297, 1345
AhdI	GACNNNNNGTC	1 cut(s)	1195
AhlI	ACTAGT	1 cut(s)	1238
AjnI	CCWGG	2 cut(s)	163, 1270
AloI	GAACNNNNNNTCC	2 cut(s)	575, 607
AluBI	AGCT	9 cut(s)	179, 213, 517, 634, 757, 794, 1018, 1318, 1376
AluI	AGCT	9 cut(s)	179, 213, 517, 634, 757, 794, 1018, 1318, 1376
Alw21I	GWGCWC	2 cut(s)	198, 1061
Alw26I	GTCTC	1 cut(s)	400
AlwI	GGATC	3 cut(s)	1151, 1190, 1319
AlwNI	CAGNNNCTG	1 cut(s)	1006
AoxI	GGCC	2 cut(s)	166, 310
ApeKI	GCWGC	4 cut(s)	179, 182, 567, 1088
AspLEI	GCGC	1 cut(s)	1310
AspS9I	GGNCC	4 cut(s)	250, 311, 867, 940
AsuHPI	GGTGA	7 cut(s)	16, 152, 337, 890, 902, 1055, 1265
AsuII	TTCGAA	1 cut(s)	1095
AvaII	GGWCC	3 cut(s)	250, 867, 940
BaeGI	GKGCMC	1 cut(s)	1363
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	1358
Bbv12I	GWGCWC	2 cut(s)	198, 1061
BbvI	GCAGC	4 cut(s)	166, 194, 579, 1075
BccI	CCATC	2 cut(s)	200, 1079
BciT130I	CCWGG	2 cut(s)	165, 1272
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	1238
BfaI	CTAG	6 cut(s)	308, 576, 723, 776, 1019, 1239
BfmI	CTRYAG	2 cut(s)	180, 1192
BfuAI	ACCTGC	2 cut(s)	933, 1185
BisI	GCNGC	4 cut(s)	180, 183, 568, 1089
BlpI	GCTNAGC	1 cut(s)	678
BlsI	GCNGC	4 cut(s)	181, 184, 569, 1090
Bme1390I	CCNGG	2 cut(s)	165, 1272
Bme18I	GGWCC	3 cut(s)	250, 867, 940
BmeRI	GACNNNNNGTC	1 cut(s)	1195
BmgT120I	GGNCC	4 cut(s)	250, 311, 867, 940
BmiI	GGNNCC	5 cut(s)	252, 313, 436, 869, 1360
BmrFI	CCNGG	2 cut(s)	165, 1272
BmsI	GCATC	3 cut(s)	166, 626, 987
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpmI	CTGGAG	2 cut(s)	1293, 1355
Bpu10I	CCTNAGC	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	1095
BpuEI	CTTGAG	1 cut(s)	382
Bsa29I	ATCGAT	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	163, 430, 453, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	4 cut(s)	303, 322, 486, 580
Bse3DI	GCAATG	2 cut(s)	474, 618
BseBI	CCWGG	2 cut(s)	165, 1272
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	4 cut(s)	163, 430, 453, 735
BseGI	GGATG	2 cut(s)	731, 764
BseLI	CCNNNNNNNGG	4 cut(s)	303, 322, 486, 580
BseMI	GCAATG	2 cut(s)	474, 618
BseMII	CTCAG	6 cut(s)	504, 573, 669, 817, 945, 998
BseRI	GAGGAG	2 cut(s)	709, 830
BseSI	GKGCMC	1 cut(s)	1363
BseXI	GCAGC	4 cut(s)	166, 194, 579, 1075
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	945
BshFI	GGCC	2 cut(s)	168, 312
BshNI	GGYRCC	1 cut(s)	1358
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	2 cut(s)	198, 1061
BsiSI	CCGG	2 cut(s)	122, 1311
BslFI	GGGAC	2 cut(s)	723, 1249
BslI	CCNNNNNNNGG	4 cut(s)	303, 322, 486, 580
BsmAI	GTCTC	1 cut(s)	400
BsmFI	GGGAC	2 cut(s)	723, 1249
BsnI	GGCC	2 cut(s)	168, 312
Bsp119I	TTCGAA	1 cut(s)	1095
Bsp1286I	GDGCHC	3 cut(s)	198, 1061, 1363
Bsp1407I	TGTACA	1 cut(s)	1209
Bsp1720I	GCTNAGC	1 cut(s)	678
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	943
BspANI	GGCC	2 cut(s)	168, 312
BspCNI	CTCAG	6 cut(s)	505, 572, 670, 816, 944, 999
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	945
BspLI	GGNNCC	5 cut(s)	252, 313, 436, 869, 1360
BspMAI	CTGCAG	2 cut(s)	184, 1196
BspMI	ACCTGC	2 cut(s)	933, 1185
BspPI	GGATC	3 cut(s)	1151, 1190, 1319
BspQI	GCTCTTC	1 cut(s)	1049
BspT104I	TTCGAA	1 cut(s)	1095
BspT107I	GGYRCC	1 cut(s)	1358
BsrDI	GCAATG	2 cut(s)	474, 618
BsrGI	TGTACA	1 cut(s)	1209
BssECI	CCNNGG	4 cut(s)	163, 430, 453, 735
BssT1I	CCWWGG	2 cut(s)	430, 453
Bst2UI	CCWGG	2 cut(s)	165, 1272
Bst4CI	ACNGT	4 cut(s)	419, 847, 877, 890
Bst6I	CTCTTC	3 cut(s)	261, 1049, 1092
BstAUI	TGTACA	1 cut(s)	1209
BstBI	TTCGAA	1 cut(s)	1095
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	8 cut(s)	267, 287, 513, 559, 678, 803, 931, 1007
BstDSI	CCRYGG	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	731, 764
BstFNI	CGCG	1 cut(s)	945
BstHHI	GCGC	1 cut(s)	1310
BstMAI	GTCTC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 98, 118, 608, 1172, 1307
BstNI	CCWGG	2 cut(s)	165, 1272
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	2 cut(s)	163, 1270
BstSFI	CTRYAG	2 cut(s)	180, 1192
BstSLI	GKGCMC	1 cut(s)	1363
BstUI	CGCG	1 cut(s)	945
BstV1I	GCAGC	4 cut(s)	166, 194, 579, 1075
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	168, 312
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	731, 764
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 843
BveI	ACCTGC	2 cut(s)	933, 1185
Cac8I	GCNNGC	1 cut(s)	545
CaiI	CAGNNNCTG	1 cut(s)	1006
CfoI	GCGC	1 cut(s)	1310
Cfr13I	GGNCC	4 cut(s)	250, 311, 867, 940
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	3 cut(s)	447, 949, 1210
CviAII	CATG	4 cut(s)	85, 454, 665, 1028
CviQI	GTAC	3 cut(s)	447, 949, 1210
DdeI	CTNAG	8 cut(s)	267, 287, 513, 559, 678, 803, 931, 1007
DriI	GACNNNNNGTC	1 cut(s)	1195
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	261, 1049, 1092
Eam1105I	GACNNNNNGTC	1 cut(s)	1195
EarI	CTCTTC	3 cut(s)	261, 1049, 1092
Eco130I	CCWWGG	2 cut(s)	430, 453
Eco47I	GGWCC	3 cut(s)	250, 867, 940
Eco57I	CTGAAG	4 cut(s)	123, 173, 620, 1127
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	311, 867
EcoRII	CCWGG	2 cut(s)	163, 1270
EcoT14I	CCWWGG	2 cut(s)	430, 453
ErhI	CCWWGG	2 cut(s)	430, 453
FaeI	CATG	4 cut(s)	88, 457, 668, 1031
FaqI	GGGAC	2 cut(s)	723, 1249
FatI	CATG	4 cut(s)	84, 453, 664, 1027
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	327
FblI	GTMKAC	2 cut(s)	744, 1131
Fnu4HI	GCNGC	4 cut(s)	180, 183, 568, 1089
FokI	GGATG	2 cut(s)	718, 751
Fsp4HI	GCNGC	4 cut(s)	180, 183, 568, 1089
FspBI	CTAG	6 cut(s)	308, 576, 723, 776, 1019, 1239
GlaI	GCGC	1 cut(s)	1309
GluI	GCNGC	4 cut(s)	180, 183, 568, 1089
GsuI	CTGGAG	2 cut(s)	1293, 1355
HaeIII	GGCC	2 cut(s)	168, 312
HapII	CCGG	2 cut(s)	122, 1311
HhaI	GCGC	1 cut(s)	1310
Hin1II	CATG	4 cut(s)	88, 457, 668, 1031
Hin6I	GCGC	1 cut(s)	1308
HinP1I	GCGC	1 cut(s)	1308
HincII	GTYRAC	5 cut(s)	373, 700, 745, 1132, 1248
HindII	GTYRAC	5 cut(s)	373, 700, 745, 1132, 1248
HinfI	GANTC	3 cut(s)	142, 468, 909
HpaII	CCGG	2 cut(s)	122, 1311
HphI	GGTGA	7 cut(s)	16, 152, 337, 890, 902, 1055, 1265
Hpy166II	GTNNAC	8 cut(s)	129, 241, 373, 700, 745, 940, 1132, 1248
Hpy188I	TCNGA	5 cut(s)	332, 514, 631, 736, 916
Hpy188III	TCNNGA	4 cut(s)	203, 242, 838, 906
Hpy8I	GTNNAC	8 cut(s)	129, 241, 373, 700, 745, 940, 1132, 1248
HpyAV	CCTTC	2 cut(s)	558, 1339
HpyCH4III	ACNGT	4 cut(s)	419, 847, 877, 890
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	8 cut(s)	112, 182, 503, 602, 782, 1000, 1194, 1301
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 98, 118, 608, 1172, 1307
HpyF3I	CTNAG	8 cut(s)	267, 287, 513, 559, 678, 803, 931, 1007
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	4 cut(s)	88, 457, 668, 1031
HspAI	GCGC	1 cut(s)	1308
Ksp22I	TGATCA	1 cut(s)	327
LguI	GCTCTTC	1 cut(s)	1049
LmnI	GCTCC	2 cut(s)	193, 632
Lsp1109I	GCAGC	4 cut(s)	166, 194, 579, 1075
LweI	GCATC	3 cut(s)	166, 626, 987
MaeI	CTAG	6 cut(s)	308, 576, 723, 776, 1019, 1239
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	3 cut(s)	655, 1043, 1283
MboII	GAAGA	8 cut(s)	248, 838, 887, 1066, 1066, 1109, 1120, 1289
MfeI	CAATTG	2 cut(s)	441, 483
MhlI	GDGCHC	3 cut(s)	198, 1061, 1363
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	6 cut(s)	93, 441, 483, 506, 1149, 1229
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	136, 462
MmeI	TCCRAC	1 cut(s)	576
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	2 cut(s)	122, 1311
MspR9I	CCNGG	2 cut(s)	165, 1272
MunI	CAATTG	2 cut(s)	441, 483
MvaI	CCWGG	2 cut(s)	165, 1272
MvnI	CGCG	1 cut(s)	945
MwoI	GCNNNNNNNGC	6 cut(s)	74, 98, 118, 608, 1172, 1307
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	217
NlaIII	CATG	4 cut(s)	88, 457, 668, 1031
NlaIV	GGNNCC	5 cut(s)	252, 313, 436, 869, 1360
NmuCI	GTSAC	3 cut(s)	655, 1043, 1283
NspI	RCATGY	1 cut(s)	1031
NspV	TTCGAA	1 cut(s)	1095
PaqCI	CACCTGC	1 cut(s)	933
PciSI	GCTCTTC	1 cut(s)	1049
PcsI	WCGNNNNNNNCGW	1 cut(s)	942
PfeI	GAWTC	1 cut(s)	909
PkrI	GCNGC	4 cut(s)	181, 184, 569, 1090
PleI	GAGTC	2 cut(s)	136, 462
PpsI	GAGTC	2 cut(s)	136, 462
PpuMI	RGGWCCY	1 cut(s)	867
Psp1406I	AACGTT	1 cut(s)	831
Psp5II	RGGWCCY	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	163, 1270
PspGI	CCWGG	2 cut(s)	163, 1270
PspN4I	GGNNCC	5 cut(s)	252, 313, 436, 869, 1360
PspPI	GGNCC	4 cut(s)	250, 311, 867, 940
PspPPI	RGGWCCY	1 cut(s)	867
PstI	CTGCAG	2 cut(s)	184, 1196
PstNI	CAGNNNCTG	1 cut(s)	1006
RsaI	GTAC	3 cut(s)	448, 950, 1211
RsaNI	GTAC	3 cut(s)	447, 949, 1210
SalI	GTCGAC	2 cut(s)	743, 1130
SapI	GCTCTTC	1 cut(s)	1049
SatI	GCNGC	4 cut(s)	180, 183, 568, 1089
Sau96I	GGNCC	4 cut(s)	250, 311, 867, 940
SchI	GAGTC	2 cut(s)	136, 462
ScrFI	CCNGG	2 cut(s)	165, 1272
SduI	GDGCHC	3 cut(s)	198, 1061, 1363
SfaNI	GCATC	3 cut(s)	166, 626, 987
SfcI	CTRYAG	2 cut(s)	180, 1192
SfuI	TTCGAA	1 cut(s)	1095
SinI	GGWCC	3 cut(s)	250, 867, 940
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SpeI	ACTAGT	1 cut(s)	1238
Sse9I	AATT	6 cut(s)	93, 441, 483, 506, 1149, 1229
SsiI	CCGC	1 cut(s)	943
SspMI	CTAG	6 cut(s)	308, 576, 723, 776, 1019, 1239
StyD4I	CCNGG	2 cut(s)	163, 1270
StyI	CCWWGG	2 cut(s)	430, 453
TaaI	ACNGT	4 cut(s)	419, 847, 877, 890
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	6 cut(s)	390, 744, 907, 1095, 1131, 1146
TasI	AATT	6 cut(s)	93, 441, 483, 506, 1149, 1229
TatI	WGTACW	1 cut(s)	1209
TfiI	GAWTC	1 cut(s)	909
TscAI	CASTG	2 cut(s)	19, 850
TseFI	GTSAC	3 cut(s)	655, 1043, 1283
TseI	GCWGC	4 cut(s)	179, 182, 567, 1088
Tsp45I	GTSAC	3 cut(s)	655, 1043, 1283
TspRI	CASTG	2 cut(s)	19, 850
VpaK11BI	GGWCC	3 cut(s)	250, 867, 940
XagI	CCTNNNNNAGG	1 cut(s)	320
XceI	RCATGY	1 cut(s)	1031
XmiI	GTMKAC	2 cut(s)	744, 1131
XspI	CTAG	6 cut(s)	308, 576, 723, 776, 1019, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.