Rmu_sc0000324.1_g000008

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000324.1
OG0017691
Physical Location & Seq
Forward (+)
38545 .. 39078
534 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
atggttagaaggaggaggaatagaattgaagggctcactgatattaatggcactttatgcactgatctaactaccatgaaatccattacatctagtttctttgaaaatcttttcacttttcattgtcatggcgattctgaaattttgattcccaatctttttcctgctttgagtattaatgatattaattgtttgaatagagatgtttctagctttgaagtgaaggaagttctcttcaatatagatggtcttaaagcccctggcgcagatggtttccctgctatcttttatcagaaacattggaatatttgtgcagatgagattgttcaactagttgtgcaggcctttagatctggaaaaattcctgaaggcctcaatcatactcttatcgcacttgtccctaaggtggtgagtccccaagatatgtccttatttcgacctattagctcgtgcaacaccctttacaaggtgattgctaaagttgtggtatccagaattcggtcttctctaagaaatcttatcagtcccaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

177

Amino Acids

19.84

Weight (kDa)

8.67

Isoelectric Point (pI)

65.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 141, 360, 495
AcuI CTGAAG 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 406, 466, 498
AgsI TTSAA 6 cut(s) 29, 104, 196, 218, 238, 329
AhlI ACTAGT 1 cut(s) 331
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 2 cut(s) 213, 447
AluI AGCT 2 cut(s) 213, 447
AoxI GGCC 2 cut(s) 342, 370
ApoI RAATTY 3 cut(s) 141, 360, 495
AseI ATTAAT 3 cut(s) 45, 177, 186
AspLEI GCGC 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 421, 481
AxyI CCTNAGG 1 cut(s) 402
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 495
BccI CCATC 2 cut(s) 239, 263
BciT130I CCWGG 1 cut(s) 261
BciVI GTATCC 1 cut(s) 499
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 3 cut(s) 93, 210, 332
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 466, 498
Bse21I CCTNAGG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 406, 466, 498
BseRI GAGGAG 1 cut(s) 28
BsgI GTGCAG 2 cut(s) 333, 359
BshFI GGCC 2 cut(s) 344, 372
BslFI GGGAC 3 cut(s) 383, 399, 510
BslI CCNNNNNNNGG 3 cut(s) 406, 466, 498
BsmFI GGGAC 3 cut(s) 383, 399, 510
BsnI GGCC 2 cut(s) 344, 372
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 64, 350
BspANI GGCC 2 cut(s) 344, 372
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 64, 350
BssSI CACGAG 1 cut(s) 448
Bst2BI CACGAG 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 2 cut(s) 402, 509
BstENI CCTNNNNNAGG 1 cut(s) 464
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 67, 353
BstMBI GATC 2 cut(s) 64, 350
BstMWI GCNNNNNNNGC 2 cut(s) 57, 263
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu36I CCTNAGG 1 cut(s) 402
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 2 cut(s) 344, 372
BtsIMutI CAGTG 2 cut(s) 36, 60
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 266
CviAII CATG 2 cut(s) 76, 128
CviJI RGCY 6 cut(s) 34, 213, 257, 344, 372, 447
CviKI_1 RGCY 6 cut(s) 34, 213, 257, 344, 372, 447
DdeI CTNAG 2 cut(s) 402, 509
DpnI GATC 2 cut(s) 66, 352
DpnII GATC 2 cut(s) 64, 350
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco147I AGGCCT 2 cut(s) 344, 372
Eco24I GRGCYC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 2 cut(s) 79, 131
FaiI YATR 6 cut(s) 58, 77, 129, 242, 381, 425
FaqI GGGAC 3 cut(s) 383, 399, 510
FatI CATG 2 cut(s) 75, 127
FriOI GRGCYC 1 cut(s) 36
FspBI CTAG 3 cut(s) 93, 210, 332
GlaI GCGC 1 cut(s) 265
HaeIII GGCC 2 cut(s) 344, 372
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 79, 131
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 3 cut(s) 134, 148, 412
HphI GGTGA 2 cut(s) 421, 481
Hpy188I TCNGA 2 cut(s) 139, 294
Hpy188III TCNNGA 3 cut(s) 354, 365, 492
HpyAV CCTTC 4 cut(s) 3, 23, 217, 362
HpyCH4V TGCA 4 cut(s) 60, 314, 340, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 263
HpyF3I CTNAG 2 cut(s) 402, 509
Hsp92II CATG 2 cut(s) 79, 131
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 64, 350
LpnPI CCDG 8 cut(s) 177, 246, 273, 291, 326, 339, 378, 505
MaeI CTAG 3 cut(s) 93, 210, 332
MalI GATC 2 cut(s) 66, 352
MboI GATC 2 cut(s) 64, 350
MboII GAAGA 2 cut(s) 226, 495
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 6 cut(s) 24, 141, 187, 360, 495, 529
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 3 cut(s) 6, 9, 383
MseI TTAA 4 cut(s) 45, 177, 186, 252
MslI CAYNNNNRTG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 57, 263
NdeII GATC 2 cut(s) 64, 350
NlaIII CATG 2 cut(s) 79, 131
PceI AGGCCT 2 cut(s) 344, 372
PfeI GAWTC 2 cut(s) 134, 148
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PshBI ATTAAT 3 cut(s) 45, 177, 186
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 4 cut(s) 45, 177, 186, 252
Sau3AI GATC 2 cut(s) 64, 350
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 36
SetI ASST 5 cut(s) 215, 408, 442, 449, 471
SmiMI CAYNNNNRTG 1 cut(s) 126
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 6 cut(s) 24, 141, 187, 360, 495, 529
SseBI AGGCCT 2 cut(s) 344, 372
SspI AATATT 1 cut(s) 307
SspMI CTAG 3 cut(s) 93, 210, 332
StuI AGGCCT 2 cut(s) 344, 372
StyD4I CCNGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 436
TaqII GACCGA 1 cut(s) 489
TasI AATT 6 cut(s) 24, 141, 187, 360, 495, 529
TfiI GAWTC 2 cut(s) 134, 148
Tru1I TTAA 4 cut(s) 45, 177, 186, 252
Tru9I TTAA 4 cut(s) 45, 177, 186, 252
TscAI CASTG 2 cut(s) 43, 67
TspDTI ATGAA 2 cut(s) 92, 110
TspRI CASTG 2 cut(s) 43, 67
VspI ATTAAT 3 cut(s) 45, 177, 186
XagI CCTNNNNNAGG 1 cut(s) 464
XapI RAATTY 3 cut(s) 141, 360, 495
XspI CTAG 3 cut(s) 93, 210, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.