Rmu_sc0000548.1_g000013

Transmembrane protein 115-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000548.1
OG0015038
Physical Location & Seq
Forward (+)
60464 .. 64862
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
atggcggtggcgatggacatggagattttgtttttgggatattgtgattcttgtgttcataatgaagtctgcaagttggtggtatcaaggatggttatcctctggctgaggaagaacgttattaagtggaatgttatatttgtgagacgactccgactattacctcgcgccttattccccaaaacccaatttcacattcacctcagagctcctccttctccgatcccgatccacctgatcactccgaccccctccaaatccaacggccgacggccatcacccgccatgagcactccgtcactcgcagggggcatgggggccttctctgggttcactcggctgtgcaagggcttagcggtggtcctgattggaggccacattgtcgttcagctcctccccgtcgccgttacttacctcgccctcattcccgccaggacgattccttttgtctggaacctcgtcacatccggttacattgaacaatcaatatttggggttgttgtaagcactcttggtcttctctttatagggaagctgcttgaacctgtctggggttttctggttggcattaagcaaatgatacctgaccaagagttgcctttattgaaaataaaagctaagtggttaccatctctctcactactgctgtccattgccataagcttctggacagctgagtcagcaacatatcttccaatcttgatatttggcacctatatgagttggatttaccttagatactggcagagaaaaccagaaacaaaacttaagggtgatccaagtgaagattttgcattttctacattcttccctgaattcttgagaccagtcattgatcctgttgcatccatattccatcggatgctttgtggaagatctgaagcctctaatgaagcccaaggttataccgtgggagggaccacattgcctggatctgaccccattgaggcatctagaaggagggaaagaggggcacgagcactggaagaaagactagcagctgagagattgggtgcagcaacgggtacagaagagctgggaagagatgccacagagaatgtatag

Protein Analysis

354

Amino Acids

39.33

Weight (kDa)

9.57

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1751 PF08551 143 - 185 2.3e-11 Eukaryotic integral membrane protein (DUF1751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07950
fragaria_vesca FvH4_7g19770
malus_domestica MD07G1176100.v1.1
prunus_persica Prupe.8G142500_v2.0.a1
pyrus_communis pycom01g13740 pycom07g17030
rosa_chinensis RchiOBHm_Chr1g0363681
rosa_laevigata RLG00000027552
rosa_multiflora Rmu_sc0000548.1_g000013
rosa_roxburghii Rroxscaffold_4G00293000
rosa_rugosa Rorug01G0308500
rosa_samantha Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana Rw1G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 710
AccII CGCG 1 cut(s) 168
AciI CCGC 4 cut(s) 5, 282, 356, 429
AclI AACGTT 1 cut(s) 117
AclWI GGATC 5 cut(s) 217, 223, 770, 830, 940
AcoI YGGCCR 2 cut(s) 265, 272
AcsI RAATTY 1 cut(s) 815
AcuI CTGAAG 1 cut(s) 900
AfaI GTAC 1 cut(s) 1027
AfiI CCNNNNNNNGG 4 cut(s) 327, 551, 915, 946
AflII CTTAAG 1 cut(s) 767
AgsI TTSAA 3 cut(s) 479, 542, 607
AjnI CCWGG 2 cut(s) 431, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 8 cut(s) 209, 391, 535, 617, 663, 674, 1001, 1036
AluI AGCT 8 cut(s) 209, 391, 535, 617, 663, 674, 1001, 1036
Alw21I GWGCWC 3 cut(s) 211, 293, 982
Alw26I GTCTC 2 cut(s) 139, 817
AlwI GGATC 5 cut(s) 217, 223, 770, 830, 940
AoxI GGCC 4 cut(s) 265, 272, 318, 373
ApeKI GCWGC 3 cut(s) 535, 998, 1016
ApoI RAATTY 1 cut(s) 815
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 318, 361, 918
AsuHPI GGTGA 3 cut(s) 191, 270, 785
AvaII GGWCC 2 cut(s) 361, 918
BaeGI GKGCMC 1 cut(s) 976
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 1 cut(s) 975
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 3 cut(s) 211, 293, 982
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 4 cut(s) 32, 522, 1010, 1028
BccI CCATC 5 cut(s) 7, 85, 283, 637, 864
BceAI ACGGC 3 cut(s) 280, 287, 389
BciT130I CCWGG 2 cut(s) 433, 930
BclI TGATCA 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 139, 817
BfaI CTAG 2 cut(s) 954, 995
BfrI CTTAAG 1 cut(s) 767
BglII AGATCT 1 cut(s) 875
BisI GCNGC 3 cut(s) 536, 999, 1017
BlpI GCTNAGC 1 cut(s) 352
BlsI GCNGC 3 cut(s) 537, 1000, 1018
Bme1390I CCNGG 2 cut(s) 433, 930
Bme18I GGWCC 2 cut(s) 361, 918
BmgT120I GGNCC 3 cut(s) 318, 361, 918
BmiI GGNNCC 4 cut(s) 319, 455, 712, 919
BmrFI CCNGG 2 cut(s) 433, 930
BmsI GCATC 4 cut(s) 852, 854, 959, 1036
BpiI GAAGAC 1 cut(s) 509
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 841
BsaBI GATNNNNATC 2 cut(s) 95, 227
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 2 cut(s) 898, 909
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 551, 915, 946
Bse1I ACTGG 3 cut(s) 746, 827, 987
Bse3DI GCAATG 2 cut(s) 651, 923
Bse8I GATNNNNATC 2 cut(s) 95, 227
BseBI CCWGG 2 cut(s) 433, 930
BseDI CCNNGG 2 cut(s) 898, 909
BseGI GGATG 4 cut(s) 96, 464, 845, 867
BseJI GATNNNNATC 2 cut(s) 95, 227
BseLI CCNNNNNNNGG 4 cut(s) 327, 551, 915, 946
BseMI GCAATG 2 cut(s) 651, 923
BseMII CTCAG 4 cut(s) 98, 217, 666, 993
BseNI ACTGG 3 cut(s) 746, 827, 987
BseRI GAGGAG 2 cut(s) 201, 383
BseSI GKGCMC 1 cut(s) 976
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 3 cut(s) 522, 1010, 1028
BseYI CCCAGC 1 cut(s) 1036
BsgI GTGCAG 1 cut(s) 1035
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 4 cut(s) 267, 274, 320, 375
BshNI GGYRCC 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 3 cut(s) 211, 293, 982
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 4 cut(s) 327, 551, 915, 946
BsmAI GTCTC 2 cut(s) 139, 817
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 931
BsnI GGCC 4 cut(s) 267, 274, 320, 375
Bso31I GGTCTC 1 cut(s) 817
Bsp1286I GDGCHC 4 cut(s) 211, 293, 976, 982
Bsp143I GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 4 cut(s) 5, 282, 356, 429
BspANI GGCC 4 cut(s) 267, 274, 320, 375
BspCNI CTCAG 4 cut(s) 99, 216, 667, 994
BspFNI CGCG 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 319, 455, 712, 919
BspPI GGATC 5 cut(s) 217, 223, 770, 830, 940
BspQI GCTCTTC 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 710
BspTI CTTAAG 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 817
BsrDI GCAATG 2 cut(s) 651, 923
BsrI ACTGG 3 cut(s) 746, 827, 987
BssECI CCNNGG 2 cut(s) 898, 909
BssMI GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
BssSI CACGAG 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 898
Bst2BI CACGAG 1 cut(s) 975
Bst2UI CCWGG 2 cut(s) 433, 930
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 2 cut(s) 1026, 1036
BstAFI CTTAAG 1 cut(s) 767
BstDEI CTNAG 7 cut(s) 107, 203, 352, 618, 675, 734, 1002
BstDSI CCRYGG 1 cut(s) 909
BstEII GGTNACC 1 cut(s) 624
BstF5I GGATG 4 cut(s) 96, 464, 845, 867
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 7 cut(s) 225, 231, 240, 778, 838, 878, 935
BstMAI GTCTC 2 cut(s) 139, 817
BstMBI GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNI CCWGG 2 cut(s) 433, 930
BstPI GGTNACC 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 431, 928
BstSLI GKGCMC 1 cut(s) 976
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 3 cut(s) 522, 1010, 1028
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 875, 932
BstYI RGATCY 2 cut(s) 875, 932
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 4 cut(s) 267, 274, 320, 375
BtgI CCRYGG 1 cut(s) 909
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 4 cut(s) 96, 464, 845, 867
BtsIMutI CAGTG 1 cut(s) 980
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 318, 361, 918
Csp6I GTAC 1 cut(s) 1026
CviAII CATG 3 cut(s) 19, 286, 313
CviQI GTAC 1 cut(s) 1026
DdeI CTNAG 7 cut(s) 107, 203, 352, 618, 675, 734, 1002
DpnI GATC 7 cut(s) 224, 230, 239, 777, 837, 877, 934
DpnII GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
DrdI GACNNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 676
EaeI YGGCCR 2 cut(s) 265, 272
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 1026, 1036
EarI CTCTTC 2 cut(s) 1026, 1036
Ecl136II GAGCTC 1 cut(s) 209
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 898
Eco24I GRGCYC 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 817
Eco47I GGWCC 2 cut(s) 361, 918
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 900
Eco91I GGTNACC 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 431, 928
EcoT14I CCWWGG 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 898
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 3 cut(s) 22, 289, 316
FaqI GGGAC 1 cut(s) 931
FatI CATG 3 cut(s) 18, 285, 312
FauI CCCGC 2 cut(s) 289, 436
FbaI TGATCA 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 536, 999, 1017
FokI GGATG 4 cut(s) 103, 451, 832, 874
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 536, 999, 1017
FspBI CTAG 2 cut(s) 954, 995
GlaI GCGC 1 cut(s) 169
GluI GCNGC 3 cut(s) 536, 999, 1017
GsaI CCCAGC 1 cut(s) 1040
HaeIII GGCC 4 cut(s) 267, 274, 320, 375
HapII CCGG 1 cut(s) 468
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 22, 289, 316
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 4 cut(s) 47, 150, 439, 677
HpaII CCGG 1 cut(s) 468
HphI GGTGA 3 cut(s) 191, 270, 785
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 7 cut(s) 155, 206, 222, 246, 861, 880, 937
Hpy188III TCNNGA 7 cut(s) 226, 364, 451, 667, 700, 820, 954
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 2 cut(s) 273, 404
HpyAV CCTTC 3 cut(s) 225, 331, 951
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 5 cut(s) 72, 345, 794, 845, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 7 cut(s) 107, 203, 352, 618, 675, 734, 1002
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 3 cut(s) 22, 289, 316
HspAI GCGC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 2 cut(s) 214, 396
Lsp1109I GCAGC 3 cut(s) 522, 1010, 1028
LweI GCATC 4 cut(s) 852, 854, 959, 1036
MaeI CTAG 2 cut(s) 954, 995
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 5 cut(s) 297, 406, 460, 470, 624
MalI GATC 7 cut(s) 224, 230, 239, 777, 837, 877, 934
MboI GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
MboII GAAGA 1 cut(s) 124
MflI RGATCY 2 cut(s) 875, 932
MhlI GDGCHC 4 cut(s) 211, 293, 976, 982
MluCI AATT 2 cut(s) 188, 815
MlyI GAGTC 2 cut(s) 144, 686
MmeI TCCRAC 4 cut(s) 178, 269, 285, 704
MseI TTAA 3 cut(s) 123, 570, 768
MslI CAYNNNNRTG 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 674, 1001
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 433, 930
MvaI CCWGG 2 cut(s) 433, 930
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 680
NdeII GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
NlaIII CATG 3 cut(s) 22, 289, 316
NlaIV GGNNCC 4 cut(s) 319, 455, 712, 919
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 297, 460
PciSI GCTCTTC 1 cut(s) 1026
PfeI GAWTC 2 cut(s) 47, 439
PkrI GCNGC 3 cut(s) 537, 1000, 1018
PleI GAGTC 2 cut(s) 144, 685
PpsI GAGTC 2 cut(s) 144, 685
Psp124BI GAGCTC 1 cut(s) 211
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 431, 928
PspEI GGTNACC 1 cut(s) 624
PspFI CCCAGC 1 cut(s) 1036
PspGI CCWGG 2 cut(s) 431, 928
PspN4I GGNNCC 4 cut(s) 319, 455, 712, 919
PspPI GGNCC 3 cut(s) 318, 361, 918
PsuI RGATCY 2 cut(s) 875, 932
PvuII CAGCTG 2 cut(s) 674, 1001
RsaI GTAC 1 cut(s) 1027
RsaNI GTAC 1 cut(s) 1026
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 123, 570, 768
SatI GCNGC 3 cut(s) 536, 999, 1017
Sau3AI GATC 7 cut(s) 222, 228, 237, 775, 835, 875, 932
Sau96I GGNCC 3 cut(s) 318, 361, 918
SchI GAGTC 2 cut(s) 144, 686
ScrFI CCNGG 2 cut(s) 433, 930
SduI GDGCHC 4 cut(s) 211, 293, 976, 982
SfaNI GCATC 4 cut(s) 852, 854, 959, 1036
SinI GGWCC 2 cut(s) 361, 918
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 767, 820
SmoI CTYRAG 2 cut(s) 767, 820
Sse9I AATT 2 cut(s) 188, 815
SsiI CCGC 4 cut(s) 5, 282, 356, 429
SspI AATATT 1 cut(s) 489
SspMI CTAG 2 cut(s) 954, 995
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 431, 928
StyI CCWWGG 1 cut(s) 898
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 1 cut(s) 120
TasI AATT 2 cut(s) 188, 815
TfiI GAWTC 2 cut(s) 47, 439
Tru1I TTAA 3 cut(s) 123, 570, 768
Tru9I TTAA 3 cut(s) 123, 570, 768
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 2 cut(s) 297, 460
TseI GCWGC 3 cut(s) 535, 998, 1016
Tsp45I GTSAC 2 cut(s) 297, 460
TspDTI ATGAA 3 cut(s) 47, 78, 906
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 987
Vha464I CTTAAG 1 cut(s) 767
VpaK11BI GGWCC 2 cut(s) 361, 918
XapI RAATTY 1 cut(s) 815
XbaI TCTAGA 1 cut(s) 953
XspI CTAG 2 cut(s) 954, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.