Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Forward (+)

79773 .. 81819

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgtcgtcgtcgtcagacgaagaggggcggtgggtcccactaaggagtagaccggagttttcggacgtgattccggtggagcaagacgacgggccgaatccggtggttccgataacctacaaggaagagttccgagagaccatggactacttccgagccctgtacaaagccgatgagcgatcccttcgcgcccttcacctcacttccgaagccatccaattcaaccctggaaactacactgtatggcactttaggcgtttagtactcgaggcactcaatcatgatttgcacgatgaacttgctctgactgaacacattgctcgaggaaactccaaaaactatcagttatggcatcataggcggtgggtagctgagaaattgggaactagtgctacaaccgaggaacttaggttcaccaagaacatactctccattgatgctaaacattaccatgcttggtctcataggcagtgggttcttcaggcacttggagggtgggaagacgaacttgactactgtcagcagctccttgaagaagacatttttaacaattctgcttggaatcagagatattttgtcattacaagatcaccgttcctgggaggcctgaaagctatgagggagtctgaagtgtgttatactcttaatggcattgttgcccgcccagagaatgaaagctcatggaggtaccttcgagggctttacaaagatgacaattcatcttgggtaaataatcctcaaatttcttcagtatgcttggagattttaaatgccaaaaccaactgtgtctttgctttgagcacacttttggatcttatctcccatggtttccaaccaagccaagagttcacagatgctgtggatgctctacgaatttcagactccgaacaaagagattctgatgtggcaaaagctgcttgttttgtcttggaatctgttgatccatttagagctaactattggcagtggtacaagaacaagcatttccaaaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

332

Amino Acids

38.74

Weight (kDa)

5.41

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	63 - 91	3.2e-07	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	96 - 126	7.9e-09	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	134 - 163	2.2e-10	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	166 - 196	1.3e-07	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	49
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	28, 361, 661
AclWI	GGATC	3 cut(s)	174, 819, 935
AcsI	RAATTY	2 cut(s)	741, 873
AcuI	CTGAAG	3 cut(s)	464, 648, 732
AfaI	GTAC	4 cut(s)	164, 264, 689, 971
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	223, 533
AhlI	ACTAGT	1 cut(s)	386
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	226, 597
AloI	GAACNNNNNNTCC	4 cut(s)	395, 413, 427, 445
AluBI	AGCT	6 cut(s)	371, 526, 614, 678, 914, 953
AluI	AGCT	6 cut(s)	371, 526, 614, 678, 914, 953
Alw21I	GWGCWC	1 cut(s)	803
Alw26I	GTCTC	2 cut(s)	131, 465
AlwI	GGATC	3 cut(s)	174, 819, 935
AlwNI	CAGNNNCTG	1 cut(s)	857
Ama87I	CYCGRG	2 cut(s)	266, 321
AoxI	GGCC	2 cut(s)	92, 604
ApeKI	GCWGC	2 cut(s)	523, 914
ApoI	RAATTY	2 cut(s)	741, 873
Asp718I	GGTACC	1 cut(s)	687
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	34, 92
AsuHPI	GGTGA	3 cut(s)	188, 406, 582
AvaI	CYCGRG	2 cut(s)	266, 321
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	507, 543
Bbv12I	GWGCWC	1 cut(s)	803
BbvI	GCAGC	2 cut(s)	535, 901
BccI	CCATC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	2 cut(s)	228, 599
BcoDI	GTCTC	2 cut(s)	131, 465
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	2 cut(s)	524, 915
BlsI	GCNGC	2 cut(s)	525, 916
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	228, 599
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	266, 321
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	34, 92
BmiI	GGNNCC	4 cut(s)	35, 36, 108, 689
BmrFI	CCNGG	2 cut(s)	228, 599
BmsI	GCATC	4 cut(s)	361, 427, 844, 853
BoxI	GACNNNNGTC	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	507, 543
BsaI	GGTCTC	2 cut(s)	131, 465
BsaJI	CCNNGG	5 cut(s)	141, 226, 399, 598, 823
BsaWI	WCCGGW	3 cut(s)	52, 73, 100
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	228, 599
BseDI	CCNNGG	5 cut(s)	141, 226, 399, 598, 823
BseGI	GGATG	2 cut(s)	213, 868
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	535, 901
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	94, 606
BshNI	GGYRCC	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	803
BsiHKCI	CYCGRG	2 cut(s)	266, 321
BsiSI	CCGG	3 cut(s)	53, 74, 101
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	131, 465
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	94, 606
Bso31I	GGTCTC	2 cut(s)	131, 465
BsoBI	CYCGRG	2 cut(s)	266, 321
Bsp1286I	GDGCHC	2 cut(s)	160, 803
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	179, 587, 811, 940
Bsp19I	CCATGG	2 cut(s)	141, 823
BspACI	CCGC	3 cut(s)	28, 361, 661
BspANI	GGCC	2 cut(s)	94, 606
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	4 cut(s)	35, 36, 108, 689
BspPI	GGATC	3 cut(s)	174, 819, 935
BspT107I	GGYRCC	1 cut(s)	687
BspTNI	GGTCTC	2 cut(s)	131, 465
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	162
BssECI	CCNNGG	5 cut(s)	141, 226, 399, 598, 823
BssMI	GATC	4 cut(s)	179, 587, 811, 940
BssT1I	CCWWGG	2 cut(s)	141, 823
Bst2UI	CCWGG	2 cut(s)	228, 599
Bst4CI	ACNGT	4 cut(s)	241, 518, 594, 785
Bst6I	CTCTTC	2 cut(s)	15, 120
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstAUI	TGTACA	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	3 cut(s)	41, 372, 407
BstDSI	CCRYGG	2 cut(s)	141, 823
BstF5I	GGATG	2 cut(s)	213, 868
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	4 cut(s)	182, 590, 814, 943
BstMAI	GTCTC	2 cut(s)	131, 465
BstMBI	GATC	4 cut(s)	179, 587, 811, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 358, 863, 914
BstNI	CCWGG	2 cut(s)	228, 599
BstPAI	GACNNNNGTC	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	226, 597
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	535, 901
BstV2I	GAAGAC	2 cut(s)	507, 543
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	2 cut(s)	94, 606
BtgI	CCRYGG	2 cut(s)	141, 823
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	213, 868
BtsI	GCAGTG	2 cut(s)	476, 971
BtsIMutI	CAGTG	3 cut(s)	237, 476, 971
Cac8I	GCNNGC	1 cut(s)	661
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	34, 92
Csp6I	GTAC	4 cut(s)	163, 263, 688, 970
CviAII	CATG	5 cut(s)	142, 281, 452, 681, 824
CviQI	GTAC	4 cut(s)	163, 263, 688, 970
DdeI	CTNAG	3 cut(s)	41, 372, 407
DpnI	GATC	4 cut(s)	181, 589, 813, 942
DpnII	GATC	4 cut(s)	179, 587, 811, 940
DraI	TTTAAA	1 cut(s)	768
Eam1104I	CTCTTC	2 cut(s)	15, 120
EarI	CTCTTC	2 cut(s)	15, 120
Eco130I	CCWWGG	2 cut(s)	141, 823
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	131, 465
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	3 cut(s)	464, 648, 732
Eco88I	CYCGRG	2 cut(s)	266, 321
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	226, 597
EcoT14I	CCWWGG	2 cut(s)	141, 823
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	141, 823
FaeI	CATG	5 cut(s)	145, 284, 455, 684, 827
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	5 cut(s)	141, 280, 451, 680, 823
FauI	CCCGC	1 cut(s)	668
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	524, 915
FokI	GGATG	2 cut(s)	200, 875
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	524, 915
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	524, 915
HaeIII	GGCC	2 cut(s)	94, 606
HapII	CCGG	3 cut(s)	53, 74, 101
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	5 cut(s)	145, 284, 455, 684, 827
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	7 cut(s)	70, 97, 562, 623, 881, 896, 932
HpaII	CCGG	3 cut(s)	53, 74, 101
HphI	GGTGA	3 cut(s)	188, 406, 582
Hpy166II	GTNNAC	3 cut(s)	50, 414, 849
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	3 cut(s)	50, 414, 849
Hpy99I	CGWCG	3 cut(s)	10, 13, 92
HpyAV	CCTTC	3 cut(s)	194, 203, 701
HpyCH4III	ACNGT	4 cut(s)	241, 518, 594, 785
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 358, 863, 914
HpyF3I	CTNAG	3 cut(s)	41, 372, 407
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	5 cut(s)	145, 284, 455, 684, 827
HspAI	GCGC	1 cut(s)	189
KflI	GGGWCCC	1 cut(s)	34
KpnI	GGTACC	1 cut(s)	691
Kzo9I	GATC	4 cut(s)	179, 587, 811, 940
LmnI	GCTCC	2 cut(s)	79, 531
Lsp1109I	GCAGC	2 cut(s)	535, 901
LweI	GCATC	4 cut(s)	361, 427, 844, 853
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	66
MalI	GATC	4 cut(s)	181, 589, 813, 942
MboI	GATC	4 cut(s)	179, 587, 811, 940
MboII	GAAGA	7 cut(s)	32, 137, 470, 512, 545, 548, 738
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	2 cut(s)	160, 803
MluCI	AATT	6 cut(s)	218, 377, 550, 715, 741, 873
MlyI	GAGTC	2 cut(s)	632, 875
MmeI	TCCRAC	1 cut(s)	856
MseI	TTAA	4 cut(s)	546, 645, 767, 997
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	3 cut(s)	53, 74, 101
MspR9I	CCNGG	2 cut(s)	228, 599
MvaI	CCWGG	2 cut(s)	228, 599
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	4 cut(s)	253, 358, 863, 914
NcoI	CCATGG	2 cut(s)	141, 823
NdeII	GATC	4 cut(s)	179, 587, 811, 940
NlaIII	CATG	5 cut(s)	145, 284, 455, 684, 827
NlaIV	GGNNCC	4 cut(s)	35, 36, 108, 689
PaeR7I	CTCGAG	2 cut(s)	266, 321
PagI	TCATGA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	606
PfeI	GAWTC	5 cut(s)	70, 97, 562, 896, 932
PkrI	GCNGC	2 cut(s)	525, 916
PleI	GAGTC	2 cut(s)	631, 875
PpsI	GAGTC	2 cut(s)	631, 875
PpuMI	RGGWCCY	1 cut(s)	34
PshAI	GACNNNNGTC	1 cut(s)	516
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	2 cut(s)	226, 597
PspGI	CCWGG	2 cut(s)	226, 597
PspN4I	GGNNCC	4 cut(s)	35, 36, 108, 689
PspPI	GGNCC	2 cut(s)	34, 92
PspPPI	RGGWCCY	1 cut(s)	34
PspXI	VCTCGAGB	2 cut(s)	266, 321
PsrI	GAACNNNNNNTAC	2 cut(s)	376, 408
PstNI	CAGNNNCTG	1 cut(s)	857
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	4 cut(s)	164, 264, 689, 971
RsaNI	GTAC	4 cut(s)	163, 263, 688, 970
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	546, 645, 767, 997
SatI	GCNGC	2 cut(s)	524, 915
Sau3AI	GATC	4 cut(s)	179, 587, 811, 940
Sau96I	GGNCC	2 cut(s)	34, 92
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	2 cut(s)	632, 875
ScrFI	CCNGG	2 cut(s)	228, 599
SduI	GDGCHC	2 cut(s)	160, 803
SfaNI	GCATC	4 cut(s)	361, 427, 844, 853
Sfr274I	CTCGAG	2 cut(s)	266, 321
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	2 cut(s)	266, 321
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	266, 321
SmoI	CTYRAG	2 cut(s)	266, 321
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	6 cut(s)	218, 377, 550, 715, 741, 873
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	3 cut(s)	28, 361, 661
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	226, 597
StyI	CCWWGG	2 cut(s)	141, 823
TaaI	ACNGT	4 cut(s)	241, 518, 594, 785
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	267, 322, 694
TasI	AATT	6 cut(s)	218, 377, 550, 715, 741, 873
TatI	WGTACW	2 cut(s)	162, 262
TfiI	GAWTC	5 cut(s)	70, 97, 562, 896, 932
Tru1I	TTAA	4 cut(s)	546, 645, 767, 997
Tru9I	TTAA	4 cut(s)	546, 645, 767, 997
TscAI	CASTG	3 cut(s)	244, 476, 971
TseI	GCWGC	2 cut(s)	523, 914
TspDTI	ATGAA	3 cut(s)	309, 687, 708
TspRI	CASTG	3 cut(s)	244, 476, 971
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	2 cut(s)	741, 873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	2 cut(s)	266, 321
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	1 cut(s)	387
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.