Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000621.1

Orthogroup ID

OG0012164

Physical Location & Seq

Genomic Coordinates Reverse (-)

35208 .. 37278

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggtcctgcgtcttctgattgtttggaggctctggcaggagaaaactggtggtggaaaaggtgttttgggaaaggtagtgcttctcatcggcatgctggcgatgatggagggctggatggtcgccaacagctactcatggcaatggctagggtctcgtcactatggtaaaggcatggtggctgctgcagcttggagtttggcaaggactttgagaagaagccctcttcaccttttgcccattagagccgtaaaagctgctgcagaaccagaaaaggagaaactcaaacaggacaaaactcccaaagagtctagttccaatgctcagccttcaagtccaagcaaaggcacagctactcttaagcctccaaagaagcctgtctattccatgaagaagggtcagattgtgagggtggacaaagagaagtacctaaatagtgtcaattatctatctgttggacatccaccttattacaaagggctggactatatttatgaagaccgtggtgaggtattggatttgcgcatatttgagaccggagagtatgcactgatagcatgggttggggtacctactgcaccggcatggcttccaacagacatgctcatcaagtcagagaaactcgattatgagagattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhO

Protein Analysis

213

Amino Acids

23.99

Weight (kDa)

9.72

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhO	PF11910	130 - 203	6e-22	Cyanobacterial and plant NDH-1 subunit O

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74880
fragaria_vesca	FvH4_1g24330 FvH4_1g24330 FvH4_1g24330
malus_domestica	MD01G1003600.v1.1
prunus_persica	Prupe.6G157800_v2.0.a1
pyrus_communis	pycom01g02350
rosa_chinensis	RchiOBHm_Chr2g0120841
rosa_laevigata	RLG00000018594
rosa_multiflora	Rmu_sc0000621.1_g000009
rosa_roxburghii	Rroxscaffold_2G00122790
rosa_rugosa	Rorug02G0232000 Rorug02G0232000 Rorug02G0232100
rosa_samantha	Rh2AG288600 Rh2BG299600 Rh2CG277600 Rh2DG313700
rosa_wichuraiana	Rw2G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	524
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AfaI	GTAC	2 cut(s)	428, 570
AfiI	CCNNNNNNNGG	2 cut(s)	344, 508
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	333
AluBI	AGCT	4 cut(s)	132, 191, 257, 353
AluI	AGCT	4 cut(s)	132, 191, 257, 353
Alw26I	GTCTC	2 cut(s)	159, 527
ApeKI	GCWGC	5 cut(s)	182, 185, 188, 257, 260
Asp718I	GGTACC	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	221, 518
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	5, 504
BbvI	GCAGC	5 cut(s)	169, 172, 200, 244, 247
BccI	CCATC	2 cut(s)	100, 112
BceAI	ACGGC	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	159, 527
BfaI	CTAG	2 cut(s)	149, 312
BfmI	CTRYAG	2 cut(s)	186, 261
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	5 cut(s)	183, 186, 189, 258, 261
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	5 cut(s)	184, 187, 190, 259, 262
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	570
BpiI	GAAGAC	2 cut(s)	5, 504
Bpu1102I	GCTNAGC	1 cut(s)	324
BsaI	GGTCTC	2 cut(s)	159, 527
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 508
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	123, 460
BseLI	CCNNNNNNNGG	2 cut(s)	344, 508
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	5 cut(s)	169, 172, 200, 244, 247
BsgI	GTGCAG	1 cut(s)	561
BshNI	GGYRCC	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	537, 581
BslI	CCNNNNNNNGG	2 cut(s)	344, 508
BsmAI	GTCTC	2 cut(s)	159, 527
Bso31I	GGTCTC	2 cut(s)	159, 527
Bsp1720I	GCTNAGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	2 cut(s)	190, 265
BspT107I	GGYRCC	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	2 cut(s)	159, 527
BsrDI	GCAATG	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	502
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	95, 99
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	123, 460
BstHHI	GCGC	1 cut(s)	525
BstMAI	GTCTC	2 cut(s)	159, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 254, 554
BstNSI	RCATGY	2 cut(s)	97, 604
BstSFI	CTRYAG	2 cut(s)	186, 261
BstV1I	GCAGC	5 cut(s)	169, 172, 200, 244, 247
BstV2I	GAAGAC	2 cut(s)	5, 504
BtgI	CCRYGG	1 cut(s)	502
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	123, 460
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	95, 99
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	427, 569
CviAII	CATG	7 cut(s)	94, 138, 175, 388, 558, 585, 601
CviQI	GTAC	2 cut(s)	427, 569
DdeI	CTNAG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco31I	GGTCTC	2 cut(s)	159, 527
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	7 cut(s)	97, 141, 178, 391, 561, 588, 604
FatI	CATG	7 cut(s)	93, 137, 174, 387, 557, 584, 600
Fnu4HI	GCNGC	5 cut(s)	183, 186, 189, 258, 261
FokI	GGATG	2 cut(s)	130, 447
Fsp4HI	GCNGC	5 cut(s)	183, 186, 189, 258, 261
FspBI	CTAG	2 cut(s)	149, 312
FspI	TGCGCA	1 cut(s)	524
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	5 cut(s)	183, 186, 189, 258, 261
HapII	CCGG	2 cut(s)	537, 581
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	7 cut(s)	97, 141, 178, 391, 561, 588, 604
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	537, 581
HphI	GGTGA	2 cut(s)	221, 518
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	3 cut(s)	18, 402, 616
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	2 cut(s)	339, 388
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4V	TGCA	4 cut(s)	188, 263, 548, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 254, 554
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	7 cut(s)	97, 141, 178, 391, 561, 588, 604
HspAI	GCGC	1 cut(s)	523
KpnI	GGTACC	1 cut(s)	572
Lsp1109I	GCAGC	5 cut(s)	169, 172, 200, 244, 247
MaeI	CTAG	2 cut(s)	149, 312
MaeIII	GTNAC	1 cut(s)	158
MboII	GAAGA	5 cut(s)	5, 218, 228, 403, 509
MluCI	AATT	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	436, 617
MnlI	CCTC	6 cut(s)	21, 103, 234, 375, 402, 502
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	3 cut(s)	92, 142, 583
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	2 cut(s)	537, 581
MwoI	GCNNNNNNNGC	3 cut(s)	188, 254, 554
NlaIII	CATG	7 cut(s)	97, 141, 178, 391, 561, 588, 604
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	158
NsbI	TGCGCA	1 cut(s)	524
NspI	RCATGY	2 cut(s)	97, 604
PaeI	GCATGC	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	184, 187, 190, 259, 262
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	2 cut(s)	190, 265
RsaI	GTAC	2 cut(s)	428, 570
RsaNI	GTAC	2 cut(s)	427, 569
RseI	CAYNNNNRTG	3 cut(s)	92, 142, 583
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	5 cut(s)	183, 186, 189, 258, 261
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	317
SfcI	CTRYAG	2 cut(s)	186, 261
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	3 cut(s)	92, 142, 583
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	1 cut(s)	442
SspMI	CTAG	2 cut(s)	149, 312
TaaI	ACNGT	1 cut(s)	503
TaqI	TCGA	1 cut(s)	624
TasI	AATT	1 cut(s)	442
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	5 cut(s)	182, 185, 188, 257, 260
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	404, 510
TspRI	CASTG	1 cut(s)	555
Vha464I	CTTAAG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	2 cut(s)	97, 604
XspI	CTAG	2 cut(s)	149, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.