Rmu_sc0000659.1_g000033

DNA repair and recombination protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000659.1
OG0008727
Physical Location & Seq
Forward (+)
139350 .. 147833
8484 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2793 bp
atggaagacgaagaagaagtcatctcactctccgattcctcctccgattccagttcctgcgacgactacacagccgacccacaagacttggatctcggagaagaagaagaggaagaagatcaagagctcgaaaacgaaccagaggttcaaaacgacgacgtacgcgagaatcgtcggagacccaaggcccgccctctgcctcctctgccgccgtccggaaaagatcggaaatcgaagaatgtcgatgctctcctcagcggcaaccttgtggtgaaaagacagcctcttcttccgcgagttctgtcggtgacggaaggagcaacagtttgtaggaaaccctttaaaccaccatgctccaaaggctatgatgatggaaatgaccagctcgctcggcgtctctcagcacgcagacggtttgttccctggggcggttcatcaagtgcaccgttttttcccgttattgagaggtttcctagtttgccaaatgatgctgagaaagatgtagtggaagagagtgtgaccctgccacctggaatagatcctttggtcttgtggcaacctgaagaattagaggatggggatgctaatatggtgcagatagtagtggaccctctgctcgttcgtttccttcgaccacatcaaagtttgggaaagacattgcagtcaatcacattactttatacccttctttaccaagggtttgatgggaaatcaatggttaaaaaggccattatagtcactcccaccagtcttgtgagcaattgggaggctgagataaagaagtgggtcggagacagagtttgcctcattgctctgtgtgaaagtaccagagatgatgttgtttctggaattgatcagttcacaagtgctcgcagccgtttgcaggttctaattgtttcttacgaaacattccgaatgcattgtacaaagtttagccacagtgaatcgtgtgaccttctcatatgtgatgaggcgcacaggctaaagaatgaccaaacgatgacgaatagggcattggctgctctttcatgcaagcggaggattttgttgtcaggaactccaatgcagaatgacctagaagagttctttgccatggtcaacttcactaatccaggaatcttaggtgatgctgcacattttcgtcgctactatgaggcacctattatttgtggaagagaacctaatgcctgtgaagaagagaggaaactaggtcttgagcgctcttcagaactcagtgcaaaagttaatcagtttatactgcggaggactaatgcactactttcaaatcacctgccaccaaagataattgaagttgtctgttgcaagttgactcctctccaattggacctttataaccattttatacattccaaaaatgttaaacgagcaatctcagaagacacaaagcaaacaaaaatattagcttatataactgctttaaagaagctatgcaatcatccaaagctcatctatgatactataaaaagtggaagtccaggaacttcaggttttgaggactgcatgcgctttttccctccacagatgttctctggaagatctggatcatggactggcggagatggggcttgggttgaactgtcaggaaagatgcatgttttagctaggttacttgcccaattacgaaagaagactgatgaccgtattgtccttgtctcaaactatacgcagacactggacctttttgcccaattgtgtcgagaaagaagatacccatatttgaggcttgatggatcaacttctatcagtaaaagacagaaactagtaaaccaattcaatgacccctcaaaggatgaatttgcatttctcttaagcagtaaggctggtggctgtggtctcaatttgataggcggaaatcgactggtgttgtttgatcctgattggaatccagccaatgataaacaagctgctgctagagtttggagggatgggcaaaagaagagagtatacatttatagatttttgagtactggaacaattgaagaaaaggtctaccagcgtcaaatgtcaaaagaagggcttcaaaaagttattcagaaggaacaagctgatagcccgatggcacagggaaatctttcaattgaggacctacgcgatttgttcacatttcatgagaatgtgaggtctgatgtgcatgagaagatgaactgcaaccgttgtcaaacttatcatgatacacctcagagtacagcagaggaagatataaaccaatcaacttataaaagcagtgagtctgcactagaaaactctgatataggtggatttgcagaaattactggatgcttacagaagttaaagagctcagaaaagcagatcgggacacctctagaggaagatttaagtaactgggggcatcatttcttctctacttcagtacccgatgctattctccaagcttcagctggtgatgaggtcacttttgtttttacaaaccaagtggacgggaagcttgtgcctatagaatcaaaagcaagtccaaagatgcagggagaagaaggaaaagagaatattttcaaatcaaagcaaaacctgaatcagaaatccatgctaatgtcttggcaaagaaaaccacttgaatctctttcttcgagtgtaaatactgccagaagcacattatcagcccctttcaggccctcgcaaaacaccactgtgcaatcagggataacctctttaaagggttcagtagcattgaagcctaaactctctcttggaaatcggttgccccagaaaagatcttctcctgatactgttgaacatgatgatgattttcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

930

Amino Acids

104.49

Weight (kDa)

6.08

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 215 - 489 2.2e-59 SNF2-related domain
DEAD PF00270 215 - 361 4.3e-07 DEAD/DEAH box helicase
ResIII PF04851 217 - 354 7e-07 Type III restriction enzyme, res subunit
Helicase_C PF00271 536 - 650 8.4e-21 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1353, 2238
AarI CACCTGC 1 cut(s) 1299
AasI GACNNNNNNGTC 2 cut(s) 661, 1664
Acc36I ACCTGC 2 cut(s) 874, 1299
AccB1I GGYRCC 1 cut(s) 1156
AccI GTMKAC 2 cut(s) 1965, 2010
AccII CGCG 3 cut(s) 165, 295, 2112
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 9 cut(s) 190, 209, 258, 293, 429, 1036, 1261, 1575, 1869
AclWI GGATC 5 cut(s) 99, 533, 1570, 1759, 1886
AcsI RAATTY 1 cut(s) 1814
AcuI CTGAAG 5 cut(s) 582, 1209, 1488, 2373, 2400
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 6 cut(s) 162, 826, 925, 1987, 2206, 2394
AfeI AGCGCT 1 cut(s) 1220
AfiI CCNNNNNNNGG 5 cut(s) 215, 428, 883, 1807, 2646
AflII CTTAAG 1 cut(s) 1828
AhlI ACTAGT 1 cut(s) 1780
AjnI CCWGG 4 cut(s) 422, 529, 1111, 1495
AjuI GAANNNNNNNTTGG 2 cut(s) 998, 1030
AleI CACNNNNGTG 1 cut(s) 2666
Alw21I GWGCWC 4 cut(s) 129, 445, 871, 2321
Alw26I GTCTC 5 cut(s) 172, 401, 786, 1678, 1859
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 5 cut(s) 99, 533, 1570, 1759, 1886
AlwNI CAGNNNCTG 2 cut(s) 57, 1693
Aor13HI TCCGGA 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 1220
AoxI GGCC 3 cut(s) 186, 726, 2648
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 5 cut(s) 873, 1019, 1130, 1925, 1928
ApoI RAATTY 1 cut(s) 1814
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 3 cut(s) 2037, 2092, 2528
AspLEI GCGC 3 cut(s) 976, 1221, 1527
AspS9I GGNCC 6 cut(s) 187, 607, 1345, 1696, 2104, 2649
AsuHPI GGTGA 5 cut(s) 283, 319, 1136, 1280, 2435
AvaII GGWCC 4 cut(s) 607, 1345, 1696, 2104
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 2376, 2409
BanI GGYRCC 1 cut(s) 1156
BanII GRGCYC 2 cut(s) 129, 2321
BarI GAAGNNNNNNTAC 2 cut(s) 1949, 1981
BbsI GAAGAC 3 cut(s) 12, 1404, 1655
Bbv12I GWGCWC 4 cut(s) 129, 445, 871, 2321
BbvCI CCTCAGC 1 cut(s) 254
BbvI GCAGC 5 cut(s) 885, 1006, 1117, 1912, 1915
BccI CCATC 7 cut(s) 365, 569, 698, 1574, 1742, 1940, 2071
BceAI ACGGC 2 cut(s) 196, 861
BciT130I CCWGG 4 cut(s) 424, 531, 1113, 1497
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 5 cut(s) 172, 401, 786, 1678, 1859
BcuI ACTAGT 1 cut(s) 1780
BfaI CTAG 8 cut(s) 474, 1076, 1208, 1623, 1781, 1932, 2258, 2345
BfmI CTRYAG 1 cut(s) 2475
BfoI RGCGCY 1 cut(s) 1222
BfrI CTTAAG 1 cut(s) 1828
BfuAI ACCTGC 2 cut(s) 874, 1299
BglII AGATCT 2 cut(s) 1556, 2750
BisI GCNGC 7 cut(s) 209, 259, 874, 1020, 1131, 1926, 1929
BlsI GCNGC 7 cut(s) 210, 260, 875, 1021, 1132, 1927, 1930
BmcAI AGTACT 1 cut(s) 1987
Bme1390I CCNGG 4 cut(s) 424, 531, 1113, 1497
Bme18I GGWCC 4 cut(s) 607, 1345, 1696, 2104
BmgT120I GGNCC 6 cut(s) 187, 607, 1345, 1696, 2104, 2649
BmiI GGNNCC 2 cut(s) 609, 1158
BmrFI CCNGG 4 cut(s) 424, 531, 1113, 1497
BmrI ACTGGG 1 cut(s) 2374
BmsI GCATC 9 cut(s) 235, 478, 571, 1117, 1599, 2288, 2380, 2389, 2490
BmuI ACTGGG 1 cut(s) 2374
BpiI GAAGAC 3 cut(s) 12, 1404, 1655
BplI GAGNNNNNCTC 2 cut(s) 789, 821
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 1235
BsaBI GATNNNNATC 2 cut(s) 1561, 1902
BsaHI GRCGYC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 172, 1859
BsaJI CCNNGG 5 cut(s) 183, 422, 423, 694, 1092
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 783, 813
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 428, 883, 1807, 2646
Bse1I ACTGG 8 cut(s) 51, 747, 1576, 1698, 1884, 1993, 2299, 2369
Bse3DI GCAATG 2 cut(s) 656, 807
Bse8I GATNNNNATC 2 cut(s) 1561, 1902
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 4 cut(s) 424, 531, 1113, 1497
BseDI CCNNGG 5 cut(s) 183, 422, 423, 694, 1092
BseGI GGATG 6 cut(s) 580, 586, 1456, 1816, 1951, 2303
BseJI GATNNNNATC 2 cut(s) 1561, 1902
BseLI CCNNNNNNNGG 5 cut(s) 215, 428, 883, 1807, 2646
BseMI GCAATG 2 cut(s) 656, 807
BseMII CTCAG 8 cut(s) 268, 414, 483, 762, 1246, 1407, 2213, 2334
BseNI ACTGG 8 cut(s) 51, 747, 1576, 1698, 1884, 1993, 2299, 2369
BseRI GAGGAG 4 cut(s) 31, 192, 242, 1323
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 5 cut(s) 885, 1006, 1117, 1912, 1915
BsgI GTGCAG 3 cut(s) 614, 1116, 2238
Bsh1236I CGCG 3 cut(s) 165, 295, 2112
BshFI GGCC 3 cut(s) 188, 728, 2650
BshNI GGYRCC 1 cut(s) 1156
BsiHKAI GWGCWC 4 cut(s) 129, 445, 871, 2321
BsiSI CCGG 1 cut(s) 216
BsiWI CGTACG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 2350
BslI CCNNNNNNNGG 5 cut(s) 215, 428, 883, 1807, 2646
BsmAI GTCTC 5 cut(s) 172, 401, 786, 1678, 1859
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 2350
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 3 cut(s) 188, 728, 2650
Bso31I GGTCTC 2 cut(s) 172, 1859
Bsp1286I GDGCHC 4 cut(s) 129, 445, 871, 2321
Bsp13I TCCGGA 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 923
Bsp19I CCATGG 1 cut(s) 1092
BspACI CCGC 9 cut(s) 190, 209, 258, 293, 429, 1036, 1261, 1575, 1869
BspANI GGCC 3 cut(s) 188, 728, 2650
BspCNI CTCAG 8 cut(s) 267, 413, 484, 763, 1245, 1406, 2212, 2333
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 3 cut(s) 165, 295, 2112
BspHI TCATGA 2 cut(s) 2128, 2188
BspLI GGNNCC 2 cut(s) 609, 1158
BspMI ACCTGC 2 cut(s) 874, 1299
BspPI GGATC 5 cut(s) 99, 533, 1570, 1759, 1886
BspQI GCTCTTC 1 cut(s) 1228
BspT107I GGYRCC 1 cut(s) 1156
BspTI CTTAAG 1 cut(s) 1828
BspTNI GGTCTC 2 cut(s) 172, 1859
BsrDI GCAATG 2 cut(s) 656, 807
BsrGI TGTACA 1 cut(s) 923
BsrI ACTGG 8 cut(s) 51, 747, 1576, 1698, 1884, 1993, 2299, 2369
BssECI CCNNGG 5 cut(s) 183, 422, 423, 694, 1092
BssNAI GTATAC 1 cut(s) 1966
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 3 cut(s) 183, 694, 1092
Bst1107I GTATAC 1 cut(s) 1966
Bst2UI CCWGG 4 cut(s) 424, 531, 1113, 1497
Bst4CI ACNGT 9 cut(s) 325, 414, 447, 941, 1599, 1661, 2174, 2668, 2767
Bst6I CTCTTC 8 cut(s) 102, 291, 504, 1074, 1168, 1191, 1228, 1952
BstACI GRCGYC 1 cut(s) 394
BstAFI CTTAAG 1 cut(s) 1828
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 923
BstC8I GCNNGC 6 cut(s) 190, 387, 406, 871, 1034, 1523
BstDEI CTNAG 9 cut(s) 254, 400, 492, 771, 1120, 1232, 1393, 2199, 2320
BstDSI CCRYGG 1 cut(s) 1092
BstF5I GGATG 6 cut(s) 580, 586, 1456, 1816, 1951, 2303
BstFNI CGCG 3 cut(s) 165, 295, 2112
BstH2I RGCGCY 1 cut(s) 1222
BstHHI GCGC 3 cut(s) 976, 1221, 1527
BstMAI GTCTC 5 cut(s) 172, 401, 786, 1678, 1859
BstMWI GCNNNNNNNGC 4 cut(s) 205, 360, 391, 1019
BstNI CCWGG 4 cut(s) 424, 531, 1113, 1497
BstNSI RCATGY 2 cut(s) 1525, 1616
BstSCI CCNGG 4 cut(s) 422, 529, 1111, 1495
BstSFI CTRYAG 1 cut(s) 2475
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 3 cut(s) 165, 295, 2112
BstV1I GCAGC 5 cut(s) 885, 1006, 1117, 1912, 1915
BstV2I GAAGAC 3 cut(s) 12, 1404, 1655
BstX2I RGATCY 4 cut(s) 91, 538, 1556, 2750
BstYI RGATCY 4 cut(s) 91, 538, 1556, 2750
BstZ17I GTATAC 1 cut(s) 1966
BsuRI GGCC 3 cut(s) 188, 728, 2650
BtgI CCRYGG 1 cut(s) 1092
BtsCI GGATG 6 cut(s) 580, 586, 1456, 1816, 1951, 2303
BtsI GCAGTG 1 cut(s) 2251
BtsIMutI CAGTG 5 cut(s) 946, 1240, 1691, 2251, 2664
BveI ACCTGC 2 cut(s) 874, 1299
Cac8I GCNNGC 6 cut(s) 190, 387, 406, 871, 1034, 1523
CaiI CAGNNNCTG 2 cut(s) 57, 1693
CciI TCATGA 2 cut(s) 2128, 2188
CfoI GCGC 3 cut(s) 976, 1221, 1527
Cfr13I GGNCC 6 cut(s) 187, 607, 1345, 1696, 2104, 2649
CseI GACGC 2 cut(s) 383, 2006
Csp6I GTAC 6 cut(s) 161, 825, 924, 1986, 2205, 2393
CspCI CAANNNNNGTGG 6 cut(s) 69, 104, 733, 768, 2436, 2471
CviQI GTAC 6 cut(s) 161, 825, 924, 1986, 2205, 2393
DdeI CTNAG 9 cut(s) 254, 400, 492, 771, 1120, 1232, 1393, 2199, 2320
DraI TTTAAA 3 cut(s) 343, 1440, 2691
DrdI GACNNNNNNGTC 2 cut(s) 661, 1664
DseDI GACNNNNNNGTC 2 cut(s) 661, 1664
Eam1104I CTCTTC 8 cut(s) 102, 291, 504, 1074, 1168, 1191, 1228, 1952
EarI CTCTTC 8 cut(s) 102, 291, 504, 1074, 1168, 1191, 1228, 1952
EciI GGCGGA 2 cut(s) 1590, 1884
Ecl136II GAGCTC 2 cut(s) 127, 2319
Eco130I CCWWGG 3 cut(s) 183, 694, 1092
Eco24I GRGCYC 2 cut(s) 129, 2321
Eco31I GGTCTC 2 cut(s) 172, 1859
Eco47I GGWCC 4 cut(s) 607, 1345, 1696, 2104
Eco47III AGCGCT 1 cut(s) 1220
Eco53kI GAGCTC 2 cut(s) 127, 2319
Eco57I CTGAAG 5 cut(s) 582, 1209, 1488, 2373, 2400
EcoICRI GAGCTC 2 cut(s) 127, 2319
EcoO109I RGGNCCY 2 cut(s) 2104, 2649
EcoRII CCWGG 4 cut(s) 422, 529, 1111, 1495
EcoT14I CCWWGG 3 cut(s) 183, 694, 1092
EcoT22I ATGCAT 2 cut(s) 921, 1614
EcoT38I GRGCYC 2 cut(s) 129, 2321
ErhI CCWWGG 3 cut(s) 183, 694, 1092
Esp3I CGTCTC 1 cut(s) 401
FalI AAGNNNNNCTT 2 cut(s) 2022, 2054
FaqI GGGAC 1 cut(s) 2350
FauI CCCGC 1 cut(s) 197
FauNDI CATATG 1 cut(s) 962
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 2 cut(s) 1965, 2010
Fnu4HI GCNGC 7 cut(s) 209, 259, 874, 1020, 1131, 1926, 1929
FokI GGATG 6 cut(s) 587, 593, 1443, 1823, 1958, 2310
FriOI GRGCYC 2 cut(s) 129, 2321
Fsp4HI GCNGC 7 cut(s) 209, 259, 874, 1020, 1131, 1926, 1929
FspBI CTAG 8 cut(s) 474, 1076, 1208, 1623, 1781, 1932, 2258, 2345
GlaI GCGC 3 cut(s) 975, 1220, 1526
GluI GCNGC 7 cut(s) 209, 259, 874, 1020, 1131, 1926, 1929
HaeII RGCGCY 1 cut(s) 1222
HaeIII GGCC 3 cut(s) 188, 728, 2650
HapII CCGG 1 cut(s) 216
HgaI GACGC 2 cut(s) 383, 2006
HhaI GCGC 3 cut(s) 976, 1221, 1527
Hin1I GRCGYC 1 cut(s) 394
Hin6I GCGC 3 cut(s) 974, 1219, 1525
HinP1I GCGC 3 cut(s) 974, 1219, 1525
HincII GTYRAC 2 cut(s) 1099, 1329
HindII GTYRAC 2 cut(s) 1099, 1329
HindIII AAGCTT 2 cut(s) 2412, 2465
HpaII CCGG 1 cut(s) 216
HphI GGTGA 5 cut(s) 283, 319, 1136, 1280, 2435
Hpy99I CGWCG 5 cut(s) 65, 158, 161, 177, 1146
HpyAV CCTTC 7 cut(s) 308, 638, 695, 965, 2027, 2050, 2507
HpyCH4III ACNGT 9 cut(s) 325, 414, 447, 941, 1599, 1661, 2174, 2668, 2767
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 360, 391, 1019
HpyF3I CTNAG 9 cut(s) 254, 400, 492, 771, 1120, 1232, 1393, 2199, 2320
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 394
HspAI GCGC 3 cut(s) 974, 1219, 1525
Kpn2I TCCGGA 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 853
LguI GCTCTTC 1 cut(s) 1228
LmnI GCTCC 2 cut(s) 317, 359
Lsp1109I GCAGC 5 cut(s) 885, 1006, 1117, 1912, 1915
LweI GCATC 9 cut(s) 235, 478, 571, 1117, 1599, 2288, 2380, 2389, 2490
MaeI CTAG 8 cut(s) 474, 1076, 1208, 1623, 1781, 1932, 2258, 2345
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 7 cut(s) 307, 517, 736, 950, 1626, 2360, 2431
MfeI CAATTG 5 cut(s) 760, 1340, 1709, 1995, 2097
MflI RGATCY 4 cut(s) 91, 538, 1556, 2750
MhlI GDGCHC 4 cut(s) 129, 445, 871, 2321
MlyI GAGTC 2 cut(s) 1324, 2258
MmeI TCCRAC 2 cut(s) 155, 769
Mph1103I ATGCAT 2 cut(s) 921, 1614
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 3 cut(s) 2037, 2092, 2528
MseI TTAA 9 cut(s) 342, 720, 1245, 1380, 1439, 1829, 2312, 2357, 2690
MslI CAYNNNNRTG 4 cut(s) 2133, 2567, 2666, 2778
MspA1I CMGCKG 2 cut(s) 258, 2420
MspCI CTTAAG 1 cut(s) 1828
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 4 cut(s) 424, 531, 1113, 1497
MunI CAATTG 5 cut(s) 760, 1340, 1709, 1995, 2097
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 4 cut(s) 424, 531, 1113, 1497
MvnI CGCG 3 cut(s) 165, 295, 2112
MwoI GCNNNNNNNGC 4 cut(s) 205, 360, 391, 1019
NcoI CCATGG 1 cut(s) 1092
NdeI CATATG 1 cut(s) 962
NlaIV GGNNCC 2 cut(s) 609, 1158
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 5 cut(s) 307, 517, 736, 950, 2431
NsiI ATGCAT 2 cut(s) 921, 1614
NspI RCATGY 2 cut(s) 1525, 1616
OliI CACNNNNGTG 1 cut(s) 2666
PaeI GCATGC 1 cut(s) 1525
PagI TCATGA 2 cut(s) 2128, 2188
PaqCI CACCTGC 1 cut(s) 1299
PasI CCCWGGG 1 cut(s) 423
PciSI GCTCTTC 1 cut(s) 1228
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 169, 628
PctI GAATGC 1 cut(s) 921
PdmI GAANNNNTTC 3 cut(s) 2037, 2092, 2528
PfeI GAWTC 9 cut(s) 35, 47, 169, 944, 1116, 1903, 2480, 2551, 2594
Pfl23II CGTACG 1 cut(s) 160
PfoI TCCNGGA 2 cut(s) 1111, 1495
PkrI GCNGC 7 cut(s) 210, 260, 875, 1021, 1132, 1927, 1930
PleI GAGTC 2 cut(s) 1324, 2257
PpsI GAGTC 2 cut(s) 1324, 2257
PpuMI RGGWCCY 1 cut(s) 2104
PsiI TTATAA 2 cut(s) 1353, 2238
Psp124BI GAGCTC 2 cut(s) 129, 2321
Psp5II RGGWCCY 1 cut(s) 2104
Psp6I CCWGG 4 cut(s) 422, 529, 1111, 1495
PspGI CCWGG 4 cut(s) 422, 529, 1111, 1495
PspLI CGTACG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 609, 1158
PspPI GGNCC 6 cut(s) 187, 607, 1345, 1696, 2104, 2649
PspPPI RGGWCCY 1 cut(s) 2104
PstNI CAGNNNCTG 2 cut(s) 57, 1693
PsuI RGATCY 4 cut(s) 91, 538, 1556, 2750
PvuII CAGCTG 1 cut(s) 2420
RsaI GTAC 6 cut(s) 162, 826, 925, 1987, 2206, 2394
RsaNI GTAC 6 cut(s) 161, 825, 924, 1986, 2205, 2393
RseI CAYNNNNRTG 4 cut(s) 2133, 2567, 2666, 2778
SacI GAGCTC 2 cut(s) 129, 2321
SapI GCTCTTC 1 cut(s) 1228
SaqAI TTAA 9 cut(s) 342, 720, 1245, 1380, 1439, 1829, 2312, 2357, 2690
SatI GCNGC 7 cut(s) 209, 259, 874, 1020, 1131, 1926, 1929
Sau96I GGNCC 6 cut(s) 187, 607, 1345, 1696, 2104, 2649
ScaI AGTACT 1 cut(s) 1987
SchI GAGTC 2 cut(s) 1324, 2258
ScrFI CCNGG 4 cut(s) 424, 531, 1113, 1497
SduI GDGCHC 4 cut(s) 129, 445, 871, 2321
SfaNI GCATC 9 cut(s) 235, 478, 571, 1117, 1599, 2288, 2380, 2389, 2490
SfcI CTRYAG 1 cut(s) 2475
SinI GGWCC 4 cut(s) 607, 1345, 1696, 2104
SmiMI CAYNNNNRTG 4 cut(s) 2133, 2567, 2666, 2778
SmlI CTYRAG 2 cut(s) 1214, 1828
SmoI CTYRAG 2 cut(s) 1214, 1828
SpeI ACTAGT 1 cut(s) 1780
SphI GCATGC 1 cut(s) 1525
SsiI CCGC 9 cut(s) 190, 209, 258, 293, 429, 1036, 1261, 1575, 1869
SspI AATATT 2 cut(s) 1419, 2527
SspMI CTAG 8 cut(s) 474, 1076, 1208, 1623, 1781, 1932, 2258, 2345
SstI GAGCTC 2 cut(s) 129, 2321
StyD4I CCNGG 4 cut(s) 422, 529, 1111, 1495
StyI CCWWGG 3 cut(s) 183, 694, 1092
TaaI ACNGT 9 cut(s) 325, 414, 447, 941, 1599, 1661, 2174, 2668, 2767
TaiI ACGT 1 cut(s) 162
TaqI TCGA 7 cut(s) 129, 233, 243, 631, 1717, 1876, 2606
TatI WGTACW 3 cut(s) 923, 1985, 2204
TauI GCSGC 2 cut(s) 211, 261
TfiI GAWTC 9 cut(s) 35, 47, 169, 944, 1116, 1903, 2480, 2551, 2594
Tru1I TTAA 9 cut(s) 342, 720, 1245, 1380, 1439, 1829, 2312, 2357, 2690
Tru9I TTAA 9 cut(s) 342, 720, 1245, 1380, 1439, 1829, 2312, 2357, 2690
TscAI CASTG 5 cut(s) 946, 1240, 1698, 2251, 2671
TseFI GTSAC 5 cut(s) 307, 517, 736, 950, 2431
TseI GCWGC 5 cut(s) 873, 1019, 1130, 1925, 1928
Tsp45I GTSAC 5 cut(s) 307, 517, 736, 950, 2431
TspDTI ATGAA 5 cut(s) 423, 1017, 1827, 2117, 2177
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 5 cut(s) 946, 1240, 1698, 2251, 2671
Vha464I CTTAAG 1 cut(s) 1828
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 4 cut(s) 607, 1345, 1696, 2104
XapI RAATTY 1 cut(s) 1814
XbaI TCTAGA 1 cut(s) 2344
XceI RCATGY 2 cut(s) 1525, 1616
XcmI CCANNNNNNNNNTGG 2 cut(s) 701, 2417
XmiI GTMKAC 2 cut(s) 1965, 2010
XmnI GAANNNNTTC 3 cut(s) 2037, 2092, 2528
XspI CTAG 8 cut(s) 474, 1076, 1208, 1623, 1781, 1932, 2258, 2345
ZrmI AGTACT 1 cut(s) 1987
Zsp2I ATGCAT 2 cut(s) 921, 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.