Rmu_sc0000660.1_g000020
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000660.1
OG0016803
Physical Location & Seq
Reverse (-)
56943 .. 62705
5763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
atgaaggcaataatccttgccctcgacgtcgtcctaaaaggtcacgcgctgtgcaaggggctccatggaaaatttctatgtcgaccaacgacagtggtgtacgtttactcgtttttatgtagtgaggacatgatcttagagtggatgaccatttatcaaagtggagggtcgtcgtttgcggtggcatggtttagggatgaacttgatctcatcaggaaagaggcgttggttgggattggccctgttatggagatggctttgtttggggaagatgaatggtatttctttagcccgagggagaggaagtatcccaacggggagaggcctaatagagcagcagcttcaggttactggaaagctgctggaagtgacaagccaattctcacctcttgtggaatatcgaagcgcataggagtcaagaaggctttggtcttttacactggtcgagctccaacaggaattaaaactgaatggatcatggtcgagtatagactgctcgacagtacaactaaaccctcaaggtcaaaagggtctatgaggttagatgattgggtactatgtcgggttcaacagaaaggaaacacatcaaagaatacatgtaacagtcaaggctctagccctgaatattggagttgcctacagagagttgagcagacacagcatgcatctgccgacctcaatactgagatgaccaatgatttcctttacaaagactgtacactaatagcttccatccttgctggtcaagctccacctatttcaagtgttagattccaaaggaccaacgatggctatgaagttggtactaattataaggtaaactccacgatatccatttctactccggggattatttccgacacactaaaaaggaaaagtacagaagaaattataaaagaaaatccctttcgactcgagaacaatctagcaagcaagaacagtgatgaggatcttcttcctagcaagagactggaagaaaactatatcaacagctacaaccacaatcactctcaaaataatattctcgaagctaatccaatagataccactgactatgaagaactcaatgaaatggccatccttggtaggtactttgcaggaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

368

Amino Acids

41.48

Weight (kDa)

6.56

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 84 - 165 2.2e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016803)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32720
malus_domestica MD03G1115100.v1.1 MD11G1133000.v1.1
prunus_persica Prupe.6G098600_v2.0.a1
pyrus_communis pycom11g10980
rosa_chinensis RchiOBHm_Chr5g0059781
rosa_laevigata RLG00000035329
rosa_multiflora Rmu_sc0000660.1_g000020
rosa_roxburghii Rroxscaffold_1G00020790
rosa_samantha Rh5AG390500 Rh5BG402000 Rh5CG426000 Rh5DG418400
rosa_wichuraiana Rw5G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 813, 893
AatII GACGTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 82
AccII CGCG 1 cut(s) 47
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 482, 957
AcoI YGGCCR 1 cut(s) 1074
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 7 cut(s) 101, 505, 555, 718, 805, 880, 1091
AfiI CCNNNNNNNGG 1 cut(s) 247
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 2 cut(s) 569, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 7 cut(s) 341, 359, 449, 728, 749, 993, 1031
AluI AGCT 7 cut(s) 341, 359, 449, 728, 749, 993, 1031
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 961
AlwI GGATC 2 cut(s) 482, 957
Ama87I CYCGRG 2 cut(s) 292, 914
AoxI GGCC 3 cut(s) 238, 323, 1074
ApeKI GCWGC 3 cut(s) 335, 338, 359
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 2 cut(s) 49, 408
AspS9I GGNCC 2 cut(s) 239, 780
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 1 cut(s) 376
AvaI CYCGRG 2 cut(s) 292, 914
AvaII GGWCC 1 cut(s) 780
BalI TGGCCA 1 cut(s) 1076
BanII GRGCYC 2 cut(s) 63, 451
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 346, 347, 350
BccI CCATC 4 cut(s) 247, 740, 782, 1085
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 1 cut(s) 961
BfaI CTAG 3 cut(s) 615, 926, 960
BfmI CTRYAG 1 cut(s) 638
BfuI GTATCC 1 cut(s) 318
BisI GCNGC 3 cut(s) 336, 339, 360
BlsI GCNGC 3 cut(s) 337, 340, 361
Bme1390I CCNGG 1 cut(s) 846
Bme18I GGWCC 1 cut(s) 780
BmeT110I CYCGRG 2 cut(s) 292, 914
BmgT120I GGNCC 2 cut(s) 239, 780
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 846
BmsI GCATC 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 502
BpuMI CCSGG 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 64, 293, 845, 1081
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse1I ACTGG 3 cut(s) 356, 445, 975
Bse8I GATNNNNATC 1 cut(s) 948
BseDI CCNNGG 4 cut(s) 64, 293, 845, 1081
BseGI GGATG 4 cut(s) 150, 202, 732, 1077
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 3 cut(s) 356, 445, 975
BseXI GCAGC 3 cut(s) 346, 347, 350
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 3 cut(s) 240, 325, 1076
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 2 cut(s) 292, 914
BsiSI CCGG 1 cut(s) 845
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 961
BsnI GGCC 3 cut(s) 240, 325, 1076
BsoBI CYCGRG 2 cut(s) 292, 914
Bsp1286I GDGCHC 2 cut(s) 63, 451
Bsp1407I TGTACA 1 cut(s) 716
Bsp143I GATC 4 cut(s) 132, 205, 474, 949
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 1 cut(s) 179
BspANI GGCC 3 cut(s) 240, 325, 1076
BspCNI CTCAG 1 cut(s) 676
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 482, 957
BsrGI TGTACA 1 cut(s) 716
BsrI ACTGG 3 cut(s) 356, 445, 975
BssECI CCNNGG 4 cut(s) 64, 293, 845, 1081
BssMI GATC 4 cut(s) 132, 205, 474, 949
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 64, 1081
Bst4CI ACNGT 5 cut(s) 94, 503, 605, 716, 941
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 716
BstC8I GCNNGC 2 cut(s) 663, 931
BstDEI CTNAG 2 cut(s) 136, 684
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 4 cut(s) 150, 202, 732, 1077
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 2 cut(s) 49, 408
BstKTI GATC 4 cut(s) 135, 208, 477, 952
BstMAI GTCTC 1 cut(s) 961
BstMBI GATC 4 cut(s) 132, 205, 474, 949
BstMWI GCNNNNNNNGC 2 cut(s) 658, 746
BstNSI RCATGY 2 cut(s) 600, 665
BstSCI CCNGG 1 cut(s) 844
BstSFI CTRYAG 1 cut(s) 638
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 3 cut(s) 346, 347, 350
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 240, 325, 1076
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 4 cut(s) 150, 202, 732, 1077
BtsIMutI CAGTG 4 cut(s) 99, 438, 946, 1047
Cac8I GCNNGC 2 cut(s) 663, 931
CfoI GCGC 2 cut(s) 49, 408
Cfr13I GGNCC 2 cut(s) 239, 780
Csp6I GTAC 7 cut(s) 100, 504, 554, 717, 804, 879, 1090
CspCI CAANNNNNGTGG 2 cut(s) 75, 110
CviAII CATG 6 cut(s) 65, 130, 186, 478, 597, 662
CviQI GTAC 7 cut(s) 100, 504, 554, 717, 804, 879, 1090
DdeI CTNAG 2 cut(s) 136, 684
DpnI GATC 4 cut(s) 134, 207, 476, 951
DpnII GATC 4 cut(s) 132, 205, 474, 949
EaeI YGGCCR 1 cut(s) 1074
Ecl136II GAGCTC 1 cut(s) 449
Eco130I CCWWGG 2 cut(s) 64, 1081
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 63, 451
Eco32I GATATC 1 cut(s) 831
Eco47I GGWCC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 2 cut(s) 292, 914
EcoICRI GAGCTC 1 cut(s) 449
EcoRV GATATC 1 cut(s) 831
EcoT14I CCWWGG 2 cut(s) 64, 1081
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 63, 451
ErhI CCWWGG 2 cut(s) 64, 1081
FaeI CATG 6 cut(s) 68, 133, 189, 481, 600, 665
FatI CATG 6 cut(s) 64, 129, 185, 477, 596, 661
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 336, 339, 360
FokI GGATG 4 cut(s) 157, 209, 719, 1064
FriOI GRGCYC 2 cut(s) 63, 451
Fsp4HI GCNGC 3 cut(s) 336, 339, 360
FspBI CTAG 3 cut(s) 615, 926, 960
GlaI GCGC 2 cut(s) 48, 407
GluI GCNGC 3 cut(s) 336, 339, 360
HaeIII GGCC 3 cut(s) 240, 325, 1076
HapII CCGG 1 cut(s) 845
HhaI GCGC 2 cut(s) 49, 408
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 68, 133, 189, 481, 600, 665
Hin6I GCGC 2 cut(s) 47, 406
HinP1I GCGC 2 cut(s) 47, 406
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HinfI GANTC 4 cut(s) 414, 771, 912, 1101
HpaII CCGG 1 cut(s) 845
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 5 cut(s) 83, 100, 106, 719, 820
Hpy188I TCNGA 2 cut(s) 859, 1106
Hpy188III TCNNGA 4 cut(s) 214, 418, 916, 1025
Hpy8I GTNNAC 5 cut(s) 83, 100, 106, 719, 820
Hpy99I CGWCG 3 cut(s) 29, 32, 175
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 5 cut(s) 94, 503, 605, 716, 941
HpyCH4IV ACGT 2 cut(s) 27, 102
HpyCH4V TGCA 3 cut(s) 54, 665, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 658, 746
HpyF3I CTNAG 2 cut(s) 136, 684
HpySE526I ACGT 2 cut(s) 27, 102
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 68, 133, 189, 481, 600, 665
HspAI GCGC 2 cut(s) 47, 406
Kzo9I GATC 4 cut(s) 132, 205, 474, 949
LmnI GCTCC 3 cut(s) 66, 454, 754
Lsp1109I GCAGC 3 cut(s) 346, 347, 350
LweI GCATC 1 cut(s) 674
MaeI CTAG 3 cut(s) 615, 926, 960
MaeII ACGT 2 cut(s) 27, 102
MaeIII GTNAC 4 cut(s) 41, 347, 368, 599
MalI GATC 4 cut(s) 134, 207, 476, 951
MboI GATC 4 cut(s) 132, 205, 474, 949
MboII GAAGA 6 cut(s) 281, 896, 944, 947, 986, 1070
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 2 cut(s) 63, 451
MlsI TGGCCA 1 cut(s) 1076
MluCI AATT 5 cut(s) 71, 378, 459, 808, 888
MluNI TGGCCA 1 cut(s) 1076
MlyI GAGTC 2 cut(s) 423, 906
MmeI TCCRAC 2 cut(s) 476, 882
Mox20I TGGCCA 1 cut(s) 1076
Mph1103I ATGCAT 1 cut(s) 667
MscI TGGCCA 1 cut(s) 1076
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 1076
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 658, 746
NciI CCSGG 1 cut(s) 846
NcoI CCATGG 1 cut(s) 64
NdeII GATC 4 cut(s) 132, 205, 474, 949
NlaIII CATG 6 cut(s) 68, 133, 189, 481, 600, 665
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 41, 368
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 2 cut(s) 600, 665
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 914
PceI AGGCCT 1 cut(s) 325
PciI ACATGT 1 cut(s) 596
PfeI GAWTC 2 cut(s) 771, 1101
PflFI GACNNNGTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 337, 340, 361
PleI GAGTC 2 cut(s) 422, 906
PpsI GAGTC 2 cut(s) 422, 906
PscI ACATGT 1 cut(s) 596
PsiI TTATAA 2 cut(s) 813, 893
Psp124BI GAGCTC 1 cut(s) 451
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 239, 780
PsuI RGATCY 1 cut(s) 949
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 7 cut(s) 101, 505, 555, 718, 805, 880, 1091
RsaNI GTAC 7 cut(s) 100, 504, 554, 717, 804, 879, 1090
SacI GAGCTC 1 cut(s) 451
SalI GTCGAC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 3 cut(s) 336, 339, 360
Sau3AI GATC 4 cut(s) 132, 205, 474, 949
Sau96I GGNCC 2 cut(s) 239, 780
SchI GAGTC 2 cut(s) 423, 906
ScrFI CCNGG 1 cut(s) 846
SduI GDGCHC 2 cut(s) 63, 451
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 638
Sfr274I CTCGAG 1 cut(s) 914
SinI GGWCC 1 cut(s) 780
SlaI CTCGAG 1 cut(s) 914
SmlI CTYRAG 2 cut(s) 517, 914
SmoI CTYRAG 2 cut(s) 517, 914
SphI GCATGC 1 cut(s) 665
Sse9I AATT 5 cut(s) 71, 378, 459, 808, 888
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 1 cut(s) 179
SspI AATATT 2 cut(s) 626, 1021
SspMI CTAG 3 cut(s) 615, 926, 960
SstI GAGCTC 1 cut(s) 451
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 844
StyI CCWWGG 2 cut(s) 64, 1081
TaaI ACNGT 5 cut(s) 94, 503, 605, 716, 941
TaiI ACGT 2 cut(s) 30, 105
TaqI TCGA 9 cut(s) 24, 82, 401, 445, 483, 498, 910, 915, 1026
TasI AATT 5 cut(s) 71, 378, 459, 808, 888
TatI WGTACW 3 cut(s) 503, 716, 878
TfiI GAWTC 2 cut(s) 771, 1101
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 4 cut(s) 99, 445, 946, 1054
TseFI GTSAC 2 cut(s) 41, 368
TseI GCWGC 3 cut(s) 335, 338, 359
Tsp45I GTSAC 2 cut(s) 41, 368
TspDTI ATGAA 6 cut(s) 17, 213, 288, 810, 1071, 1083
TspRI CASTG 4 cut(s) 99, 445, 946, 1054
Tth111I GACNNNGTC 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 780
XapI RAATTY 1 cut(s) 71
XceI RCATGY 2 cut(s) 600, 665
XhoI CTCGAG 1 cut(s) 914
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 3 cut(s) 615, 926, 960
ZraI GACGTC 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.