Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000670.1

Orthogroup ID

OG0015775

Physical Location & Seq

Genomic Coordinates Forward (+)

64676 .. 69270

Gene Structure 4595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgtggtggtgtgttttgattgatttcagttttgggttgtttttgtttcttcaaattgcatcttggatctttgatctggaaagaggaagaacgaagaacagagagagagagagatttggattggcgagtggggcaatcggaccccgacaccaactagcgccggaatccttcagtctctacgatctgtataatccctacctctaccgtcaccaactgccaccatcaggactgccctgtccccgtcgcaccaacttctccttatccgcagaaggaattggctacgatatggattggaatgaagaaagtgatggaattctggtggtggtggagccggcagaggtggagatggaaccaaatgcgttagaggtagagaagcctctttcactctcttccttctcaattgcagaggtggagaagcctcagccccttaaccaacgcccaagatcatcgacgccttaccaatcttctgcctttgcggtcaagggagtgaacagagcctacaatcctaaagaaggagagaaccacaacttcaatcctagtgcgggaacatcaagattttgtgagaagtgtgggatgaataatcacactgcgcggtattgcagggcacacttgaagtgcacatactgggagggcaaaaggcacacctacgcatactatcgcagaaggaagaatgataatgctgctgctgaatgtggacaaattcgatccaaggcaaatcatgttgaggcacagaatgataacaaggaagctgcttttgtcaattttccattcacaaaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2

Protein Analysis

260

Amino Acids

29.83

Weight (kDa)

7.61

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015775)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029583 RLG00000029632 RLG00000031683
rosa_multiflora	Rmu_sc0000670.1_g000015 Rmu_sc0004284.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004070 Rroxscaffold_3G00225670
rosa_samantha	Rh2BG087600 Rh2BG143500 Rh2BG172700 Rh3BG259600 Rh4DG167300 Rh5BG514500 Rh5BG535900 Rh5CG538100 Rh6AG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	234
AccII	CGCG	1 cut(s)	592
AciI	CCGC	4 cut(s)	264, 476, 542, 592
AclWI	GGATC	2 cut(s)	74, 699
AcsI	RAATTY	2 cut(s)	312, 699
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	3 cut(s)	224, 512, 542
AgsI	TTSAA	3 cut(s)	53, 532, 613
AluBI	AGCT	1 cut(s)	749
AluI	AGCT	1 cut(s)	749
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	1 cut(s)	179
Alw44I	GTGCAC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	74, 699
ApaLI	GTGCAC	1 cut(s)	616
ApeKI	GCWGC	3 cut(s)	680, 683, 749
ApoI	RAATTY	2 cut(s)	312, 699
AspLEI	GCGC	2 cut(s)	160, 592
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	2 cut(s)	607, 620
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
Bbv12I	GWGCWC	1 cut(s)	620
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	667, 670, 736
BccI	CCATC	3 cut(s)	229, 302, 340
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	155, 537
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	3 cut(s)	681, 684, 750
BlsI	GCNGC	3 cut(s)	682, 685, 751
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	142, 330, 351
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	634
Bpu10I	CCTNAGC	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 512, 542
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	629
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	3 cut(s)	224, 512, 542
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	629
BseSI	GKGCMC	2 cut(s)	607, 620
BseXI	GCAGC	3 cut(s)	667, 670, 736
Bsh1236I	CGCG	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	161, 332
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	224, 512, 542
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	607, 620
Bsp143I	GATC	5 cut(s)	66, 73, 181, 443, 704
BspACI	CCGC	4 cut(s)	264, 476, 542, 592
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	142, 330, 351
BspPI	GGATC	2 cut(s)	74, 699
BsrFI	RCCGGY	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	629
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	5 cut(s)	66, 73, 181, 443, 704
BssNI	GRCGYC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	592
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	160, 592
BstKTI	GATC	5 cut(s)	69, 76, 184, 446, 707
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	5 cut(s)	66, 73, 181, 443, 704
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstSLI	GKGCMC	2 cut(s)	607, 620
BstUI	CGCG	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	667, 670, 736
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	2 cut(s)	160, 592
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	1 cut(s)	460
CviAII	CATG	1 cut(s)	719
CviJI	RGCY	7 cut(s)	279, 331, 376, 418, 424, 497, 749
CviKI_1	RGCY	7 cut(s)	279, 331, 376, 418, 424, 497, 749
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	5 cut(s)	68, 75, 183, 445, 706
DpnII	GATC	5 cut(s)	66, 73, 181, 443, 704
DrdI	GACNNNNNNGTC	1 cut(s)	234
DseDI	GACNNNNNNGTC	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	154
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	708
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	1 cut(s)	722
FaiI	YATR	5 cut(s)	189, 287, 622, 652, 720
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	718
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	3 cut(s)	681, 684, 750
FokI	GGATG	1 cut(s)	586
Fsp4HI	GCNGC	3 cut(s)	681, 684, 750
FspBI	CTAG	2 cut(s)	155, 537
GlaI	GCGC	2 cut(s)	159, 591
GluI	GCNGC	3 cut(s)	681, 684, 750
HaeII	RGCGCY	1 cut(s)	161
HapII	CCGG	2 cut(s)	161, 332
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	160, 592
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	1 cut(s)	722
Hin6I	GCGC	2 cut(s)	158, 590
HinP1I	GCGC	2 cut(s)	158, 590
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	161, 332
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	490, 618, 695
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	3 cut(s)	77, 225, 552
Hpy8I	GTNNAC	3 cut(s)	490, 618, 695
Hpy99I	CGWCG	2 cut(s)	246, 454
HpyAV	CCTTC	5 cut(s)	178, 263, 403, 506, 657
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	59, 404, 600, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	1 cut(s)	722
HspAI	GCGC	2 cut(s)	158, 590
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	5 cut(s)	66, 73, 181, 443, 704
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	62, 174, 210, 247, 302, 345, 586, 610
Lsp1109I	GCAGC	3 cut(s)	667, 670, 736
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	2 cut(s)	155, 537
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	5 cut(s)	68, 75, 183, 445, 706
MboI	GATC	5 cut(s)	66, 73, 181, 443, 704
MboII	GAAGA	7 cut(s)	41, 99, 106, 311, 381, 456, 679
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	607, 620
MluCI	AATT	6 cut(s)	54, 273, 312, 399, 699, 760
MnlI	CCTC	9 cut(s)	77, 209, 331, 358, 387, 400, 429, 622, 718
MroNI	GCCGGC	1 cut(s)	331
MseI	TTAA	1 cut(s)	429
MspI	CCGG	2 cut(s)	161, 332
MunI	CAATTG	1 cut(s)	399
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	333
NdeII	GATC	5 cut(s)	66, 73, 181, 443, 704
NgoMIV	GCCGGC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	722
NlaIV	GGNNCC	3 cut(s)	142, 330, 351
NmuCI	GTSAC	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	682, 685, 751
PspN4I	GGNNCC	3 cut(s)	142, 330, 351
PspPI	GGNCC	1 cut(s)	140
PsrI	GAACNNNNNNTAC	2 cut(s)	482, 514
PsuI	RGATCY	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	3 cut(s)	681, 684, 750
Sau3AI	GATC	5 cut(s)	66, 73, 181, 443, 704
Sau96I	GGNCC	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	607, 620
SetI	ASST	6 cut(s)	201, 342, 369, 411, 647, 751
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	6 cut(s)	54, 273, 312, 399, 699, 760
SsiI	CCGC	4 cut(s)	264, 476, 542, 592
SspMI	CTAG	2 cut(s)	155, 537
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	449, 703
TasI	AATT	6 cut(s)	54, 273, 312, 399, 699, 760
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	680, 683, 749
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	312, 590
TspRI	CASTG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	140
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	2 cut(s)	312, 699
XspI	CTAG	2 cut(s)	155, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.