Rmu_sc0000709.1_g000004

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000709.1
OG0016979
Physical Location & Seq
Forward (+)
9173 .. 11198
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000709.1_g000004.1.cds

Sequence Viewer

Length: 432 bp
ctgggaaatataaattctacaaagaatggatcttcgaatttaggttttggttcgacttccagaggaaatagcagttcaagaagaagcttaaattcatcgtcgcgaagcgttcttttacagagttatcaattgctgctaactttgccggctgcagtacttttactaacagagtactgtgagagtgtctcaagtgagactgagaatgttggtcttcctatgatcttgttacatggctttggagcctcagttttctcttggaattgggttatgaagctgttcgctaaggtcattggttccaaagttctggcattttatagatcgaagtttggcaccagaacgtgtggctgctctaatccttatttttatcacaagaaaattttgagaaatagccaagacttatcatgtcaaccggatacaagtgatggcgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

143

Amino Acids

15.62

Weight (kDa)

9.36

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 103
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 4 cut(s) 13, 37, 91, 375
AfaI GTAC 2 cut(s) 156, 173
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 1 cut(s) 78
AluBI AGCT 2 cut(s) 87, 274
AluI AGCT 2 cut(s) 87, 274
Alw26I GTCTC 2 cut(s) 188, 190
AlwI GGATC 1 cut(s) 37
ApeKI GCWGC 3 cut(s) 133, 149, 345
ApoI RAATTY 4 cut(s) 13, 37, 91, 375
Asp700I GAANNNNTTC 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 120, 136, 332
BccI CCATC 1 cut(s) 416
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 188, 190
BfmI CTRYAG 1 cut(s) 150
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 3 cut(s) 134, 150, 346
BlsI GCNGC 3 cut(s) 135, 151, 347
BmcAI AGTACT 2 cut(s) 156, 173
BmiI GGNNCC 3 cut(s) 241, 295, 331
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 170, 202
Bpu10I CCTNAGC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 231, 261
Bse118I RCCGGY 1 cut(s) 145
BseMII CTCAG 2 cut(s) 189, 258
BseXI GCAGC 3 cut(s) 120, 136, 332
Bsh1236I CGCG 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 146, 410
BsmAI GTCTC 2 cut(s) 188, 190
Bsp119I TTCGAA 1 cut(s) 35
Bsp143I GATC 3 cut(s) 29, 219, 317
Bsp68I TCGCGA 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 190, 257
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 241, 295, 331
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssMI GATC 3 cut(s) 29, 219, 317
Bst4CI ACNGT 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 198, 244, 282
BstFNI CGCG 1 cut(s) 103
BstKTI GATC 3 cut(s) 32, 222, 320
BstMAI GTCTC 2 cut(s) 188, 190
BstMBI GATC 3 cut(s) 29, 219, 317
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 120, 136, 332
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 29
BsuI GTATCC 1 cut(s) 406
BtuMI TCGCGA 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 145
Csp6I GTAC 2 cut(s) 155, 172
CviAII CATG 2 cut(s) 230, 402
CviJI RGCY 7 cut(s) 87, 149, 234, 242, 274, 345, 390
CviKI_1 RGCY 7 cut(s) 87, 149, 234, 242, 274, 345, 390
CviQI GTAC 2 cut(s) 155, 172
DdeI CTNAG 3 cut(s) 198, 244, 282
DpnI GATC 3 cut(s) 31, 221, 319
DpnII GATC 3 cut(s) 29, 219, 317
FaeI CATG 2 cut(s) 233, 405
FaiI YATR 6 cut(s) 11, 218, 231, 269, 315, 403
FatI CATG 2 cut(s) 229, 401
Fnu4HI GCNGC 3 cut(s) 134, 150, 346
Fsp4HI GCNGC 3 cut(s) 134, 150, 346
GluI GCNGC 3 cut(s) 134, 150, 346
HapII CCGG 2 cut(s) 146, 410
Hin1II CATG 2 cut(s) 233, 405
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HindIII AAGCTT 1 cut(s) 85
HpaII CCGG 2 cut(s) 146, 410
Hpy166II GTNNAC 1 cut(s) 407
Hpy188III TCNNGA 3 cut(s) 60, 78, 102
Hpy8I GTNNAC 1 cut(s) 407
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 3 cut(s) 198, 244, 282
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 2 cut(s) 233, 405
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 29, 219, 317
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 73, 159, 290, 346, 423
Lsp1109I GCAGC 3 cut(s) 120, 136, 332
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 225
MalI GATC 3 cut(s) 31, 221, 319
MboI GATC 3 cut(s) 29, 219, 317
MboII GAAGA 3 cut(s) 24, 93, 203
MfeI CAATTG 1 cut(s) 128
MflI RGATCY 1 cut(s) 29
MluCI AATT 6 cut(s) 13, 37, 91, 128, 259, 375
MnlI CCTC 2 cut(s) 56, 253
MroNI GCCGGC 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 89
MspI CCGG 2 cut(s) 146, 410
MunI CAATTG 1 cut(s) 128
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 142
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 3 cut(s) 29, 219, 317
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 2 cut(s) 233, 405
NlaIV GGNNCC 3 cut(s) 241, 295, 331
NruI TCGCGA 1 cut(s) 103
NspV TTCGAA 1 cut(s) 35
PdiI GCCGGC 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 135, 151, 347
PspN4I GGNNCC 3 cut(s) 241, 295, 331
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 29
RruI TCGCGA 1 cut(s) 103
RsaI GTAC 2 cut(s) 156, 173
RsaNI GTAC 2 cut(s) 155, 172
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 3 cut(s) 134, 150, 346
Sau3AI GATC 3 cut(s) 29, 219, 317
ScaI AGTACT 2 cut(s) 156, 173
SetI ASST 5 cut(s) 46, 89, 276, 288, 341
SfcI CTRYAG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 6 cut(s) 13, 37, 91, 128, 259, 375
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 341
TaqI TCGA 3 cut(s) 35, 53, 320
TasI AATT 6 cut(s) 13, 37, 91, 128, 259, 375
TatI WGTACW 2 cut(s) 154, 171
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseI GCWGC 3 cut(s) 133, 149, 345
TspDTI ATGAA 2 cut(s) 84, 284
XapI RAATTY 4 cut(s) 13, 37, 91, 375
XmnI GAANNNNTTC 1 cut(s) 275
ZrmI AGTACT 2 cut(s) 156, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.