Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004724.1

Orthogroup ID

OG0016979

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5857

Gene Structure 5857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004724.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 592 bp

ggataagacttacctgttaagtggttctgatgactttactgccaagttagaagtaataatgaaatctgaagatatgtgtttggcgtccgctaagaagttcttccttgtgtttgataagccgagtaaactttctccctctctcatcttttcctcacctgcaaaccaagaaaaacaatcttcgaatttaggttttggtttgacttccagaggaaatagcagttcaagaagcagcttaaattcatcgtcgcgaagctttcttctacagagtacacctgttatcaattggtatgaggtgaagcttgtgtttatggcaagatacttgtatcagaaatatatgagggagaaaattctgagatacaggggaggcaaagtccatcatgattcatctaacaagtccccaaattggcaaagggggaacaagaggcttactgaagaaacagtacttttactaacagagtactgtgagagtgtctcaagtgagactgagaatactggtcttcctatgatcttgttacatggctttggagcctcagttttctcttggaattgggttatgaagctgttcgctaaggcatttatcttctggaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

196

Amino Acids

22.4

Weight (kDa)

9.56

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108651 RchiOBHm_Chr2g0152831
rosa_multiflora	Rmu_sc0000709.1_g000004 Rmu_sc0004724.1_g000001 Rmu_sc0004838.1_g000012 Rmu_sc0008440.1_g000010
rosa_roxburghii	Rroxscaffold_1G00028680
rosa_rugosa	Rorug01G0075900 Rorug05G0382700
rosa_samantha	Rh1DG161100 Rh4DG234000 Rh6CG244200
rosa_wichuraiana	Rw1G017770 Rw6G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccII	CGCG	1 cut(s)	248
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	3 cut(s)	182, 236, 346
AcuI	CTGAAG	2 cut(s)	88, 451
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	269, 442, 459
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	4 cut(s)	232, 253, 299, 560
AluI	AGCT	4 cut(s)	232, 253, 299, 560
Alw26I	GTCTC	2 cut(s)	474, 476
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	182, 236, 346
Asp700I	GAANNNNTTC	2 cut(s)	99, 561
AsuHPI	GGTGA	2 cut(s)	145, 305
AsuII	TTCGAA	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	474, 476
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmcAI	AGTACT	2 cut(s)	442, 459
BmiI	GGNNCC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
Bpu10I	CCTNAGC	1 cut(s)	568
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	84
BsaXI	ACNNNNNCTCC	4 cut(s)	355, 385, 517, 547
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	1 cut(s)	497
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	3 cut(s)	342, 475, 544
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	474, 476
BsmFI	GGGAC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	505
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	3 cut(s)	343, 476, 543
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	527
BspMI	ACCTGC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	440, 462
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	180
BstDEI	CTNAG	5 cut(s)	91, 351, 484, 530, 568
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	2 cut(s)	474, 476
BstMBI	GATC	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	489
BtuMI	TCGCGA	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	377
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	268, 441, 458
CviAII	CATG	2 cut(s)	378, 516
CviJI	RGCY	8 cut(s)	119, 232, 253, 299, 425, 520, 528, 560
CviKI_1	RGCY	8 cut(s)	119, 232, 253, 299, 425, 520, 528, 560
CviQI	GTAC	3 cut(s)	268, 441, 458
DdeI	CTNAG	5 cut(s)	91, 351, 484, 530, 568
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	88, 451
FaeI	CATG	2 cut(s)	381, 519
FaiI	YATR	9 cut(s)	75, 289, 309, 334, 336, 379, 504, 517, 555
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	377, 515
Fnu4HI	GCNGC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	381, 519
HindIII	AAGCTT	2 cut(s)	251, 297
HinfI	GANTC	1 cut(s)	381
HphI	GGTGA	2 cut(s)	145, 305
Hpy166II	GTNNAC	2 cut(s)	126, 270
Hpy188I	TCNGA	4 cut(s)	29, 68, 328, 352
Hpy188III	TCNNGA	5 cut(s)	205, 223, 247, 378, 584
Hpy8I	GTNNAC	2 cut(s)	126, 270
Hpy99I	CGWCG	1 cut(s)	248
HpyCH4III	ACNGT	2 cut(s)	440, 462
HpyCH4V	TGCA	1 cut(s)	159
HpyF3I	CTNAG	5 cut(s)	91, 351, 484, 530, 568
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	381, 519
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	525
LpnPI	CCDG	7 cut(s)	27, 169, 218, 286, 344, 478, 569
Lsp1109I	GCAGC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	7 cut(s)	81, 92, 169, 249, 444, 489, 572
MfeI	CAATTG	1 cut(s)	281
MluCI	AATT	6 cut(s)	182, 236, 281, 346, 401, 545
MnlI	CCTC	8 cut(s)	146, 161, 201, 284, 331, 357, 415, 539
MroXI	GAANNNNTTC	2 cut(s)	99, 561
MseI	TTAA	2 cut(s)	18, 234
MunI	CAATTG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	248
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	2 cut(s)	381, 519
NlaIV	GGNNCC	1 cut(s)	527
NmeAIII	GCCGAG	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	180
PagI	TCATGA	1 cut(s)	377
PaqCI	CACCTGC	1 cut(s)	164
PdmI	GAANNNNTTC	2 cut(s)	99, 561
PfeI	GAWTC	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	527
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	3 cut(s)	269, 442, 459
RsaNI	GTAC	3 cut(s)	268, 441, 458
SaqAI	TTAA	2 cut(s)	18, 234
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	505
ScaI	AGTACT	2 cut(s)	442, 459
SetI	ASST	9 cut(s)	16, 158, 191, 234, 255, 275, 295, 301, 562
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	6 cut(s)	182, 236, 281, 346, 401, 545
SsiI	CCGC	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	440, 462
TaqI	TCGA	1 cut(s)	180
TasI	AATT	6 cut(s)	182, 236, 281, 346, 401, 545
TatI	WGTACW	3 cut(s)	267, 440, 457
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	18, 234
Tru9I	TTAA	2 cut(s)	18, 234
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	4 cut(s)	75, 229, 373, 570
XapI	RAATTY	3 cut(s)	182, 236, 346
XmnI	GAANNNNTTC	2 cut(s)	99, 561
ZrmI	AGTACT	2 cut(s)	442, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.