Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008440.1

Orthogroup ID

OG0016979

Physical Location & Seq

Genomic Coordinates Reverse (-)

55105 .. 57584

Gene Structure 2480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008440.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ctgggaaatataaattctacaaagaatggatcttcgaatttaggttttggttcgacttccagaggaaatagcagttcaaggagaagcttaaattcatcgtcgcgaagctttcttctacagagttatcaattgctgctaactttgccggctgcagtacttttactaacagagtactgtgagagtgtctcaagtgagactgagaatgttggtcttcctatgatcttgttacatggctttggagcctcagttttctcttggaattgggttatgaagctgttcgctaaggcatttatcttctggaaatggggaatcgaaatctcaactaagaaggccattatagagggcaccagaacgtgtggctgctctaatccttatttttatcacaagaaaattttgagaaatagccaagacttatcatgtcaaccggatacaagtgatggcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

8.99

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108651 RchiOBHm_Chr2g0152831
rosa_multiflora	Rmu_sc0000709.1_g000004 Rmu_sc0004724.1_g000001 Rmu_sc0004838.1_g000012 Rmu_sc0008440.1_g000010
rosa_roxburghii	Rroxscaffold_1G00028680
rosa_rugosa	Rorug01G0075900 Rorug05G0382700
rosa_samantha	Rh1DG161100 Rh4DG234000 Rh6CG244200
rosa_wichuraiana	Rw1G017770 Rw6G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccII	CGCG	1 cut(s)	103
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	4 cut(s)	13, 37, 91, 390
AfaI	GTAC	2 cut(s)	156, 173
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	3 cut(s)	87, 108, 274
AluI	AGCT	3 cut(s)	87, 108, 274
Alw26I	GTCTC	2 cut(s)	188, 190
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	133, 149, 360
ApoI	RAATTY	4 cut(s)	13, 37, 91, 390
Asp700I	GAANNNNTTC	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	120, 136, 347
BccI	CCATC	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	188, 190
BfmI	CTRYAG	2 cut(s)	116, 150
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	3 cut(s)	134, 150, 361
BlsI	GCNGC	3 cut(s)	135, 151, 362
BmcAI	AGTACT	2 cut(s)	156, 173
BmiI	GGNNCC	2 cut(s)	241, 346
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	172
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bse118I	RCCGGY	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	189, 258
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	120, 136, 347
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	146, 425
BsmAI	GTCTC	2 cut(s)	188, 190
BsnI	GGCC	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	29, 219
Bsp68I	TCGCGA	1 cut(s)	103
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	2 cut(s)	190, 257
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	241, 346
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	2 cut(s)	29, 219
Bst4CI	ACNGT	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	4 cut(s)	198, 244, 282, 324
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	32, 222
BstMAI	GTCTC	2 cut(s)	188, 190
BstMBI	GATC	2 cut(s)	29, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	116, 150
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	120, 136, 347
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	332
BtuMI	TCGCGA	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	155, 172
CviAII	CATG	2 cut(s)	230, 417
CviJI	RGCY	9 cut(s)	87, 108, 149, 234, 242, 274, 332, 360, 405
CviKI_1	RGCY	9 cut(s)	87, 108, 149, 234, 242, 274, 332, 360, 405
CviQI	GTAC	2 cut(s)	155, 172
DdeI	CTNAG	4 cut(s)	198, 244, 282, 324
DpnI	GATC	2 cut(s)	31, 221
DpnII	GATC	2 cut(s)	29, 219
FaeI	CATG	2 cut(s)	233, 420
FaiI	YATR	6 cut(s)	11, 218, 231, 269, 338, 418
FatI	CATG	2 cut(s)	229, 416
Fnu4HI	GCNGC	3 cut(s)	134, 150, 361
Fsp4HI	GCNGC	3 cut(s)	134, 150, 361
GluI	GCNGC	3 cut(s)	134, 150, 361
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	2 cut(s)	146, 425
Hin1II	CATG	2 cut(s)	233, 420
HincII	GTYRAC	1 cut(s)	422
HindII	GTYRAC	1 cut(s)	422
HindIII	AAGCTT	2 cut(s)	85, 106
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	2 cut(s)	146, 425
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188III	TCNNGA	3 cut(s)	60, 102, 298
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	4 cut(s)	198, 244, 282, 324
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	233, 420
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	29, 219
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	5 cut(s)	73, 159, 283, 361, 438
Lsp1109I	GCAGC	3 cut(s)	120, 136, 347
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	31, 221
MboI	GATC	2 cut(s)	29, 219
MboII	GAAGA	4 cut(s)	24, 104, 203, 286
MfeI	CAATTG	1 cut(s)	128
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	6 cut(s)	13, 37, 91, 128, 259, 390
MnlI	CCTC	3 cut(s)	56, 253, 334
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	89
MspI	CCGG	2 cut(s)	146, 425
MunI	CAATTG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	147
NdeII	GATC	2 cut(s)	29, 219
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	233, 420
NlaIV	GGNNCC	2 cut(s)	241, 346
NruI	TCGCGA	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	135, 151, 362
PspN4I	GGNNCC	2 cut(s)	241, 346
PstI	CTGCAG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	103
RsaI	GTAC	2 cut(s)	156, 173
RsaNI	GTAC	2 cut(s)	155, 172
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	3 cut(s)	134, 150, 361
Sau3AI	GATC	2 cut(s)	29, 219
ScaI	AGTACT	2 cut(s)	156, 173
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	5 cut(s)	46, 89, 110, 276, 356
SfcI	CTRYAG	2 cut(s)	116, 150
SfuI	TTCGAA	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	6 cut(s)	13, 37, 91, 128, 259, 390
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	3 cut(s)	35, 53, 312
TasI	AATT	6 cut(s)	13, 37, 91, 128, 259, 390
TatI	WGTACW	2 cut(s)	154, 171
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	3 cut(s)	133, 149, 360
TspDTI	ATGAA	2 cut(s)	84, 284
XapI	RAATTY	4 cut(s)	13, 37, 91, 390
XmnI	GAANNNNTTC	1 cut(s)	275
ZrmI	AGTACT	2 cut(s)	156, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.