Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004838.1

Orthogroup ID

OG0016979

Physical Location & Seq

Genomic Coordinates Reverse (-)

36016 .. 38321

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004838.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggctagcattgctaaagatgctctaacaatatcaacggagatccgtgttttggttcgacttccagaggaaataacagttcaagaagcggcttcaattcatcgtcgctactgtcacgaagctttcttctaccgagttatcaattggtatgaggtgaaggttgtgtttatggcaagatacttgtataagaagtatatgagggagaaaattctgaggtatagaggtggcaaagaccatcatgattcatctaacaagacccggaattggcaaagggggaacaggaggcttactgaacaaatagggggaaactctgtcaggcatttatcttctggaaatggggaatcgaaatctgtgaatctgtactccatggcattttcaatgcttgttaccttgtttttcattgattttctagcagctgagaaggccattatagagggacattcagctggttctcttgtagcagctgagtcatattttgaagcactagaacgtgtggctgctctaatccttattttaacaagaaaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

176

Amino Acids

20.27

Weight (kDa)

9.67

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108651 RchiOBHm_Chr2g0152831
rosa_multiflora	Rmu_sc0000709.1_g000004 Rmu_sc0004724.1_g000001 Rmu_sc0004838.1_g000012 Rmu_sc0008440.1_g000010
rosa_roxburghii	Rroxscaffold_1G00028680
rosa_rugosa	Rorug01G0075900 Rorug05G0382700
rosa_samantha	Rh1DG161100 Rh4DG234000 Rh6CG244200
rosa_wichuraiana	Rw1G017770 Rw6G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	207
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	2 cut(s)	52, 264
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	83, 96, 378, 479
AluBI	AGCT	4 cut(s)	122, 416, 446, 464
AluI	AGCT	4 cut(s)	122, 416, 446, 464
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	413, 461, 497
ApoI	RAATTY	1 cut(s)	207
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	166
AsuNHI	GCTAGC	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	425, 473, 484
BccI	CCATC	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	3 cut(s)	6, 410, 485
BisI	GCNGC	4 cut(s)	90, 414, 462, 498
BlsI	GCNGC	4 cut(s)	91, 415, 463, 499
Bme1390I	CCNGG	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	1 cut(s)	10
BmtI	GCTAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 264
Bse3DI	GCAATG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	52, 264
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	3 cut(s)	203, 408, 456
BseXI	GCAGC	3 cut(s)	425, 473, 484
BshFI	GGCC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	52, 264
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	3 cut(s)	204, 409, 457
BspHI	TCATGA	1 cut(s)	238
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	79, 113
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	212, 417, 465
BstDSI	CCRYGG	1 cut(s)	366
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 422
BstSCI	CCNGG	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	425, 473, 484
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	2 cut(s)	239, 367
CviJI	RGCY	9 cut(s)	5, 92, 122, 286, 416, 425, 446, 464, 497
CviKI_1	RGCY	9 cut(s)	5, 92, 122, 286, 416, 425, 446, 464, 497
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	212, 417, 465
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	242, 370
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	2 cut(s)	238, 366
Fnu4HI	GCNGC	4 cut(s)	90, 414, 462, 498
Fsp4HI	GCNGC	4 cut(s)	90, 414, 462, 498
FspBI	CTAG	3 cut(s)	6, 410, 485
GluI	GCNGC	4 cut(s)	90, 414, 462, 498
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	2 cut(s)	242, 370
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	4 cut(s)	242, 341, 355, 467
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	5 cut(s)	65, 83, 116, 239, 330
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	151, 415
HpyCH4III	ACNGT	2 cut(s)	79, 113
HpyCH4IV	ACGT	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 422
HpyF3I	CTNAG	3 cut(s)	212, 417, 465
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	2 cut(s)	242, 370
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	6 cut(s)	78, 265, 272, 301, 315, 432
Lsp1109I	GCAGC	3 cut(s)	425, 473, 484
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	6, 410, 485
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	113, 385
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	118, 318
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	4 cut(s)	96, 142, 207, 262
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	7 cut(s)	61, 145, 192, 207, 215, 276, 427
MseI	TTAA	1 cut(s)	515
MspA1I	CMGCKG	3 cut(s)	416, 446, 464
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 422
NciI	CCSGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	1 cut(s)	42
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	242, 370
NmuCI	GTSAC	1 cut(s)	113
PagI	TCATGA	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	242, 341, 355
PkrI	GCNGC	4 cut(s)	91, 415, 463, 499
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	3 cut(s)	416, 446, 464
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	4 cut(s)	90, 414, 462, 498
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	10
Sse9I	AATT	4 cut(s)	96, 142, 207, 262
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	3 cut(s)	6, 410, 485
StyD4I	CCNGG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	79, 113
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	58, 344
TasI	AATT	4 cut(s)	96, 142, 207, 262
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	242, 341, 355
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	413, 461, 497
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	89, 234, 388
TspGWI	ACGGA	2 cut(s)	35, 53
XapI	RAATTY	1 cut(s)	207
XspI	CTAG	3 cut(s)	6, 410, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.