Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016979

Physical Location & Seq

Genomic Coordinates Reverse (-)

41485136 .. 41486880

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGAAATATAAATTCTACAATGGATGGATCTTCGAATTTAGGTTTTGGTTTGACTTCCAGAGGAAATAGCAGTTCAAGAAGCAGCTTAAATTCATCGTCGCGAAGCTTTCTTCTACAGAGTACACCTGTTATCAATTGGTATGAGGTGAAGCTTGTGTTTATGGCAAGATACTTGTATCAGAAATATATGAGGGAGAAAATTATGAGATACAGAGGAGGAAAAGTCCATCATGATTCATCTAACAAGTCCCCAAATTGGCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

10.53

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108651 RchiOBHm_Chr2g0152831
rosa_multiflora	Rmu_sc0000709.1_g000004 Rmu_sc0004724.1_g000001 Rmu_sc0004838.1_g000012 Rmu_sc0008440.1_g000010
rosa_roxburghii	Rroxscaffold_1G00028680
rosa_rugosa	Rorug01G0075900 Rorug05G0382700
rosa_samantha	Rh1DG161100 Rh4DG234000 Rh6CG244200
rosa_wichuraiana	Rw1G017770 Rw6G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	13, 37, 91
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	3 cut(s)	87, 108, 154
AluI	AGCT	3 cut(s)	87, 108, 154
AlwI	GGATC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	13, 37, 91
AsuHPI	GGTGA	1 cut(s)	160
AsuII	TTCGAA	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	2 cut(s)	20, 237
BfmI	CTRYAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	29
Bsp68I	TCGCGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	232
BspPI	GGATC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	35
BssMI	GATC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	116
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	31
BtuMI	TCGCGA	1 cut(s)	103
CciI	TCATGA	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	3 cut(s)	87, 108, 154
CviKI_1	RGCY	3 cut(s)	87, 108, 154
CviQI	GTAC	1 cut(s)	123
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
FaeI	CATG	1 cut(s)	236
FaiI	YATR	7 cut(s)	11, 144, 164, 189, 191, 206, 234
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	236
HindIII	AAGCTT	2 cut(s)	106, 152
HinfI	GANTC	1 cut(s)	236
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	4 cut(s)	60, 78, 102, 233
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	29
LpnPI	CCDG	2 cut(s)	73, 141
Lsp1109I	GCAGC	1 cut(s)	96
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	24, 104
MfeI	CAATTG	1 cut(s)	136
MflI	RGATCY	1 cut(s)	29
MluCI	AATT	6 cut(s)	13, 37, 91, 136, 201, 256
MnlI	CCTC	5 cut(s)	56, 139, 186, 209, 212
MseI	TTAA	1 cut(s)	89
MunI	CAATTG	1 cut(s)	136
MvnI	CGCG	1 cut(s)	103
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	236
NruI	TCGCGA	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	35
PagI	TCATGA	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	103
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	29
SetI	ASST	7 cut(s)	46, 89, 110, 130, 150, 156, 269
SfcI	CTRYAG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	35
SgeI	CNNG	9 cut(s)	72, 90, 114, 140, 167, 180, 187, 245, 259
Sse9I	AATT	6 cut(s)	13, 37, 91, 136, 201, 256
TaqI	TCGA	1 cut(s)	35
TasI	AATT	6 cut(s)	13, 37, 91, 136, 201, 256
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	84, 228
XapI	RAATTY	3 cut(s)	13, 37, 91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.