Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016979

Physical Location & Seq

Genomic Coordinates Reverse (-)

41120478 .. 41121361

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG244200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAATGGATCTTCGAATTTAGGTTTTGGTTCGACTTCCAGAGGAAATAGCAGTTCAAGAAGCGGCTTAAATTCATCGTCGCGAAGCTTTCTTCTACAGAGTACACCTGTTATCAATTGGTATGAGGTGAAGCTTGTGTTTATGGCAAGATACTTGTATCAGAAATATATGAGGGAGAAAATTCTGAGGTACAGAGGAGGCAAAGTCCATCATGATTCATCTAACAAGTCCCCAAATTGGCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

82

Amino Acids

9.44

Weight (kDa)

10.77

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016979)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108651 RchiOBHm_Chr2g0152831
rosa_multiflora	Rmu_sc0000709.1_g000004 Rmu_sc0004724.1_g000001 Rmu_sc0004838.1_g000012 Rmu_sc0008440.1_g000010
rosa_roxburghii	Rroxscaffold_1G00028680
rosa_rugosa	Rorug01G0075900 Rorug05G0382700
rosa_samantha	Rh1DG161100 Rh4DG234000 Rh6CG244200
rosa_wichuraiana	Rw1G017770 Rw6G020850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	3 cut(s)	16, 70, 180
AfaI	GTAC	2 cut(s)	103, 191
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	57
AluBI	AGCT	2 cut(s)	87, 133
AluI	AGCT	2 cut(s)	87, 133
AlwI	GGATC	1 cut(s)	16
ApoI	RAATTY	3 cut(s)	16, 70, 180
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	14
BccI	CCATC	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	8
Bsp68I	TCGCGA	1 cut(s)	82
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	211
BspPI	GGATC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	14
BssMI	GATC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BtuMI	TCGCGA	1 cut(s)	82
CciI	TCATGA	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	102, 190
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	66, 87, 133
CviKI_1	RGCY	3 cut(s)	66, 87, 133
CviQI	GTAC	2 cut(s)	102, 190
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	123, 143, 168, 170, 213
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	2 cut(s)	85, 131
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	162, 186
Hpy188III	TCNNGA	4 cut(s)	39, 57, 81, 212
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	8
LpnPI	CCDG	2 cut(s)	52, 120
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	3, 83
MfeI	CAATTG	1 cut(s)	115
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	5 cut(s)	16, 70, 115, 180, 235
MnlI	CCTC	6 cut(s)	35, 118, 165, 180, 188, 191
MseI	TTAA	1 cut(s)	68
MunI	CAATTG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	82
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	215
NruI	TCGCGA	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	14
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	8
RruI	TCGCGA	1 cut(s)	82
RsaI	GTAC	2 cut(s)	103, 191
RsaNI	GTAC	2 cut(s)	102, 190
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	8
SetI	ASST	7 cut(s)	25, 89, 109, 129, 135, 191, 248
SfcI	CTRYAG	1 cut(s)	95
SfuI	TTCGAA	1 cut(s)	14
SgeI	CNNG	9 cut(s)	51, 69, 93, 119, 146, 159, 166, 224, 238
Sse9I	AATT	5 cut(s)	16, 70, 115, 180, 235
SsiI	CCGC	1 cut(s)	63
TaqI	TCGA	2 cut(s)	14, 32
TasI	AATT	5 cut(s)	16, 70, 115, 180, 235
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	17, 63, 207
XapI	RAATTY	3 cut(s)	16, 70, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.