Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000714.1

Orthogroup ID

OG0014042

Physical Location & Seq

Genomic Coordinates Forward (+)

29266 .. 37035

Gene Structure 7770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000714.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3960 bp

atgaatccctccaccctcctcgccccttcttcttcaacgccgcagcgttcaattctccagtcgcagttcctcaaccctatccctctccgcgccaccgcctccgcgaccgtcccacggcgccgtttcagggtctcatttccccgcaactcggctgcccagtcggacggcgccacgtcaccaccaccgcggacagatgtctttgggggcaagagagagctcactggagtccagccccttgtggagaagctttcgccgccgctaaggttggtgacgtcggcaattgtgttcgccggagcggtggctgcgggttacgggttggggcttcaggtcgggaagacccagaacaccgcgttgggtggggctgtggtgctcggagctgctggtggagccgctgtgtacgctttaaatgccagcgctccggccgtcgccgccgtcgatttgcacaactacgttgccggccgggatgaccccagagctgtgaagaaggaggatattgaaggcattgcgaaaaagtatggtgtgagcaagcaagatgaggcattcaatgcggagctctgtgatttatactaccggttcgtcacttcagtgatacctccaggaagtgaagaacttaaaggggatgaagtcgataccatagtgaacttcaaaaatgctctgggcatcgatgaccctgaagcagcttcaatgcacatggagattggtagacgcattttcagacagaggcttgagactggggaccgtgaaggtgatctagagcagcgtcgggcatttcagaagctgatatatgtctcaacacttgtgtttggagatgcttcatctttcctcttgccttggaagcgtgttttcaaggtcaccgattcccaggtggagattgctatccgtgataatgcacagaggttgtatgcttccaagctaaaatcagctggcagagatattgatgcagagccacttgttaggctaagagaagcacaactcatgtatcggctttctgatgagaatgctgcagacttgttcaaggagcacacaagaaaactggccgaggaaaatatttcatcagcactcaatattctcaagtccagaacaagaacagcggggggtgtcacacgagttgtggaagagcttgataaggttctagcactcaatagtttgctcatctcactaaagaaccagccagatgctgttcgctttgcacctggggttgggccaatttctttacttgggggtgattattatggtgatagaaagatagatgacttgaagcacctttataaagcatatgtcacggattctttatcagggggtcgcttggaagagaataagctttctgcattgaatcagcttaagaatatatttgggttaggcaaccgagaggcagaagccattgtgctagatgttacttcaaaggtataccgtaaacgtctttcacaggctgttagtgggggtgatttggaagcagcagatagcaaagcagctttccttcaaggtatttgtgaggagctgcacttcgatccacagaaggcgagtgggattcatgaagaaatttaccggcagaagcttcagctgtgtgttgctgatggagagcttgatgaggaggatgttgctgccttgttaaggctgcgggtcttgctatgtataccaagggaaactgttgaagcttcccatacagagatctgtggcagtttgtttgaaaaggttgtgaaggatgcaattgcatctggtgttgatggatacgacgctgatgtgaaattagctgtcagaaaggcagcccatggcttgcgattgactagggaggcagccatgtctattgcaagcaaggcagtcagaaggatttttgttaactacgtaaaacgagcacgggcagccgggaaccgtactgaggctgcaaaagaacttaaaaagctgatagccttcaacacattggttgtgactgaattagtggcagacataaaaggggaatcatctgatacatcgacagatgagccaacaaaggagaaagaagtaaaagaggaagaagaaacagtcccagaggatgaggaatgggaatctattcagacacttagaaaaataagacctgacaaggaacttgcagcgaagttggggaagcctggtcagactgagataactctgaaagatgacctgcaagaaagagagaggaccgacctgtacaaaacatacttgcttttttgtataactggagaagtgaagaagattccatttggtgctcagatcactacaaagaaggatgattcagagtatctgctactaaatcagcttggagcaatattgggtttgagcactacagaggtcgtggaagtacacaggagcctggccgagcaagctttcaggcaacaagcagaggtgattttagctgatgggcaattgacaaaagccagggtagagcaacttgatgagttgcagaagcaagtcgggttgcctccacaatatgttcaaaagataataaagagtataacaactacaaaaatggcgtctgccattgaaacagctattggccaggggaggctcaatattaagcagataagagaactgaaacaatcaagtgttgatttagaaagcatgatatctgagagcttgcgagagaacctattcaaaaaaacggttgatgagatattctcatcaggcactggagagtttgatgaggaggaagtctatgagaaaatcccagcggatctcaacattaatgtcaagaaggcaagaggtgtagttctggagcttgcaaagagcagattatctaattcactgattcaagctgtgtcacttttgcggcagagaaatcgtcaaggagtggtttcttctcttaatgacatgctggcttgtgtttcttctcttaatgacatgctggcttgtgataaagctgtgcctgcccagccactttcatgggatgttccagaggagctggccgatctgtttgccatataccttaaaagtgacccagcacctgagaaactgtcacgcttgcagtatctgctgggcattaatgattccatggcagcttccctcggggagatgggagacagattatcccctgctggtgcagaggaaaacatagcttcagcacaattgtcctcagattactatgcaacaagatgcccgaaagccctttctacagttcggactgcagttattaatgctgtggtgaaggagcatcgcatgggggcatccttgctccgtctccattttcacgattgctttgttaatggatgtgatgcatctgttctattagatgacactgcaaattttactggggagaaaacagcgttaccaaatttggactctataagaggatttgaagtgattgatactataaaatctcaactggaaagcatctgccctggggttgtttcctgtgcagacatccttgccattgcagcccgtgattcagttgtttcgttgggagggccttcgtggatagttcagttaggcagaagagattccacaacagcaagtttaagtgctgcaaatactgatctcccatctccaagcctagatgttaatgacctcatctctgccttctcgaataaaggctttagtgccaaagatttggtagctctctcaggatctcacacaatgggtcaagccaggtgtgtattgttccgagaccggatctataatgagactgacatcaactcagcacttgctacatcactgaaatcaaactgtccaagctcagggagtgatgacaacctttccccactggatgttacaagtcctgttttcttcgacaacgcttattataagaacttggttaatagcaagggtctcttgcattctgaccaacaactcttcagtggtggttcaacagattctcaggttacgacttacagcaccaaccctttagctttctttgcagattttgccaatgccatggtgaaaatggggaacctcaacctgcttactggatccaatggtcaaattcgtacgaactgccgcaaaataaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic110

Protein Analysis

1319

Amino Acids

143.77

Weight (kDa)

5.65

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06950
fragaria_vesca	FvH4_3g40080
malus_domestica	MD03G1058800.v1.1 MD11G1060900.v1.1
prunus_persica	Prupe.6G045000_v2.0.a1
pyrus_communis	pycom03g04710 pycom11g05040
rosa_chinensis	RchiOBHm_Chr5g0072271
rosa_laevigata	RLG00000036290
rosa_multiflora	Rmu_sc0000714.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009000
rosa_rugosa	Rorug05G0417400
rosa_samantha	Rh5AG473200 Rh5BG493500 Rh5CG517500 Rh5DG505400
rosa_wichuraiana	Rw5G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1269, 3753
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	2 cut(s)	2145, 3915
AccB1I	GGYRCC	2 cut(s)	117, 167
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	3 cut(s)	703, 1407, 1633
AccII	CGCG	4 cut(s)	90, 104, 187, 350
AclWI	GGATC	6 cut(s)	1502, 2694, 3583, 3629, 3912, 3925
AcoI	YGGCCR	6 cut(s)	420, 457, 1035, 2328, 2509, 2916
AcsI	RAATTY	4 cut(s)	1539, 3253, 3283, 3930
AcuI	CTGAAG	6 cut(s)	308, 567, 693, 1541, 3054, 3787
AcyI	GRCGYC	4 cut(s)	118, 168, 272, 2486
AfaI	GTAC	5 cut(s)	398, 1873, 2165, 2316, 3937
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 3686
AflII	CTTAAG	1 cut(s)	1340
AgeI	ACCGGT	1 cut(s)	570
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	9 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511, 3349, 3596
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 2490, 2522
AleI	CACNNNNGTG	1 cut(s)	584
Alw21I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
Alw26I	GTCTC	8 cut(s)	136, 722, 793, 3024, 3194, 3609, 3626, 3782
AlwI	GGATC	6 cut(s)	1502, 2694, 3583, 3629, 3912, 3925
AlwNI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2957, 2983
Ama87I	CYCGRG	1 cut(s)	3017
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	8 cut(s)	420, 457, 1035, 1202, 2328, 2509, 2916, 3416
ApoI	RAATTY	4 cut(s)	1539, 3253, 3283, 3930
ArsI	GACNNNNNNTTYG	2 cut(s)	2471, 2503
AseI	ATTAAT	3 cut(s)	2697, 2994, 3144
AsiGI	ACCGGT	1 cut(s)	570
Asp700I	GAANNNNTTC	3 cut(s)	2046, 2603, 3448
AspLEI	GCGC	4 cut(s)	92, 120, 170, 416
AspS9I	GGNCC	4 cut(s)	736, 1202, 2154, 3416
AsuC2I	CCSGG	2 cut(s)	461, 1864
AvaI	CYCGRG	1 cut(s)	3017
AvaII	GGWCC	2 cut(s)	736, 2154
BaeI	ACNNNNGTAYC	4 cut(s)	621, 654, 962, 995
BalI	TGGCCA	1 cut(s)	2511
BamHI	GGATCC	1 cut(s)	3917
BanI	GGYRCC	2 cut(s)	117, 167
BanII	GRGCYC	2 cut(s)	219, 555
BauI	CACGAG	1 cut(s)	1104
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
BccI	CCATC	5 cut(s)	1568, 1718, 2366, 3019, 3499
BceAI	ACGGC	5 cut(s)	105, 131, 181, 407, 416
BcgI	CGANNNNNNTGC	4 cut(s)	2774, 2808, 2909, 2943
BciT130I	CCWGG	9 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513, 3351, 3598
BciVI	GTATCC	1 cut(s)	1721
BcnI	CCSGG	2 cut(s)	461, 1864
BcoDI	GTCTC	8 cut(s)	136, 722, 793, 3024, 3194, 3609, 3626, 3782
BfaI	CTAG	5 cut(s)	752, 1133, 1388, 1785, 3503
BfmI	CTRYAG	4 cut(s)	1002, 2298, 3123, 3135
BfoI	RGCGCY	3 cut(s)	121, 171, 417
BfrI	CTTAAG	1 cut(s)	1340
BfuAI	ACCTGC	2 cut(s)	2145, 3915
BfuI	GTATCC	1 cut(s)	1721
BglII	AGATCT	1 cut(s)	1668
Bme18I	GGWCC	2 cut(s)	736, 2154
BmeT110I	CYCGRG	1 cut(s)	3017
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	4 cut(s)	736, 1202, 2154, 3416
BmiI	GGNNCC	8 cut(s)	119, 169, 388, 737, 1868, 2324, 3899, 3919
BmrI	ACTGGG	3 cut(s)	151, 741, 3270
BmuI	ACTGGG	3 cut(s)	151, 741, 3270
BoxI	GACNNNNGTC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	2615, 2647
BpmI	CTGGAG	6 cut(s)	41, 243, 579, 2214, 2664, 2747
Bpu10I	CCTNAGC	2 cut(s)	260, 3685
BpuEI	CTTGAG	2 cut(s)	746, 1055
BpuMI	CCSGG	2 cut(s)	461, 1864
Bsa29I	ATCGAT	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	1843
BsaBI	GATNNNNATC	1 cut(s)	875
BsaHI	GRCGYC	4 cut(s)	118, 168, 272, 2486
BsaI	GGTCTC	3 cut(s)	136, 3609, 3782
BsaWI	WCCGGW	2 cut(s)	570, 3618
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 3686
Bse118I	RCCGGY	3 cut(s)	455, 570, 1545
Bse3DI	GCAATG	2 cut(s)	501, 3381
Bse8I	GATNNNNATC	1 cut(s)	875
BseBI	CCWGG	9 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513, 3351, 3598
BseCI	ATCGAT	1 cut(s)	663
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 3686
BseMI	GCAATG	2 cut(s)	501, 3381
BseRI	GAGGAG	5 cut(s)	8, 1508, 1604, 2672, 2924
BseX3I	CGGCCG	2 cut(s)	420, 457
BseYI	CCCAGC	4 cut(s)	2680, 2883, 2950, 2986
BsgI	GTGCAG	3 cut(s)	1484, 3072, 3387
Bsh1236I	CGCG	4 cut(s)	90, 104, 187, 350
Bsh1285I	CGRYCG	3 cut(s)	108, 423, 460
BshFI	GGCC	8 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2918, 3418
BshNI	GGYRCC	2 cut(s)	117, 167
BshTI	ACCGGT	1 cut(s)	570
BshVI	ATCGAT	1 cut(s)	663
BsiEI	CGRYCG	3 cut(s)	108, 423, 460
BsiHKAI	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
BsiHKCI	CYCGRG	1 cut(s)	3017
BsiSI	CCGG	8 cut(s)	291, 419, 456, 460, 571, 1546, 1863, 3619
BsiWI	CGTACG	1 cut(s)	3935
BslFI	GGGAC	3 cut(s)	95, 749, 2006
BslI	CCNNNNNNNGG	7 cut(s)	114, 127, 148, 1199, 1611, 1876, 3686
BsmAI	GTCTC	8 cut(s)	136, 722, 793, 3024, 3194, 3609, 3626, 3782
BsmBI	CGTCTC	1 cut(s)	3194
BsmFI	GGGAC	3 cut(s)	95, 749, 2006
BsmI	GAATGC	3 cut(s)	539, 1003, 3784
BsnI	GGCC	8 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2918, 3418
Bso31I	GGTCTC	3 cut(s)	136, 3609, 3782
BsoBI	CYCGRG	1 cut(s)	3017
Bsp1286I	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
Bsp1407I	TGTACA	1 cut(s)	2163
Bsp19I	CCATGG	3 cut(s)	1768, 3003, 3882
BspANI	GGCC	8 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2918, 3418
BspDI	ATCGAT	1 cut(s)	663
BspFNI	CGCG	4 cut(s)	90, 104, 187, 350
BspHI	TCATGA	1 cut(s)	1531
BspLI	GGNNCC	8 cut(s)	119, 169, 388, 737, 1868, 2324, 3899, 3919
BspMAI	CTGCAG	2 cut(s)	1006, 3139
BspMI	ACCTGC	2 cut(s)	2145, 3915
BspPI	GGATC	6 cut(s)	1502, 2694, 3583, 3629, 3912, 3925
BspQI	GCTCTTC	1 cut(s)	1110
BspT107I	GGYRCC	2 cut(s)	117, 167
BspTI	CTTAAG	1 cut(s)	1340
BspTNI	GGTCTC	3 cut(s)	136, 3609, 3782
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	2 cut(s)	501, 3381
BsrFI	RCCGGY	3 cut(s)	455, 570, 1545
BsrGI	TGTACA	1 cut(s)	2163
BssAI	RCCGGY	3 cut(s)	455, 570, 1545
BssNAI	GTATAC	2 cut(s)	1408, 1634
BssNI	GRCGYC	4 cut(s)	118, 168, 272, 2486
BssSI	CACGAG	1 cut(s)	1104
BssT1I	CCWWGG	5 cut(s)	830, 1637, 1768, 3003, 3882
Bst1107I	GTATAC	2 cut(s)	1408, 1634
Bst2BI	CACGAG	1 cut(s)	1104
Bst2UI	CCWGG	9 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513, 3351, 3598
Bst6I	CTCTTC	4 cut(s)	1110, 1305, 3439, 3806
BstACI	GRCGYC	4 cut(s)	118, 168, 272, 2486
BstAFI	CTTAAG	1 cut(s)	1340
BstAPI	GCANNNNNTGC	3 cut(s)	545, 2983, 3872
BstAUI	TGTACA	1 cut(s)	2163
BstBAI	YACGTR	1 cut(s)	1843
BstDSI	CCRYGG	5 cut(s)	113, 185, 1768, 3003, 3882
BstEII	GGTNACC	1 cut(s)	850
BstENI	CCTNNNNNAGG	1 cut(s)	1609
BstFNI	CGCG	4 cut(s)	90, 104, 187, 350
BstH2I	RGCGCY	3 cut(s)	121, 171, 417
BstHHI	GCGC	4 cut(s)	92, 120, 170, 416
BstMAI	GTCTC	8 cut(s)	136, 722, 793, 3024, 3194, 3609, 3626, 3782
BstMCI	CGRYCG	3 cut(s)	108, 423, 460
BstNI	CCWGG	9 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513, 3351, 3598
BstNSI	RCATGY	2 cut(s)	2827, 2857
BstPAI	GACNNNNGTC	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	850
BstSFI	CTRYAG	4 cut(s)	1002, 2298, 3123, 3135
BstSNI	TACGTA	1 cut(s)	1843
BstUI	CGCG	4 cut(s)	90, 104, 187, 350
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	5 cut(s)	1668, 2686, 3575, 3621, 3917
BstXI	CCANNNNNNTGG	3 cut(s)	2895, 3559, 3883
BstYI	RGATCY	5 cut(s)	1668, 2686, 3575, 3621, 3917
BstZ17I	GTATAC	2 cut(s)	1408, 1634
BstZI	CGGCCG	2 cut(s)	420, 457
Bsu15I	ATCGAT	1 cut(s)	663
BsuI	GTATCC	1 cut(s)	1721
BsuRI	GGCC	8 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2918, 3418
BsuTUI	ATCGAT	1 cut(s)	663
BtgI	CCRYGG	5 cut(s)	113, 185, 1768, 3003, 3882
BtgZI	GCGATG	1 cut(s)	3149
BtrI	CACGTC	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	3246
BtsIMutI	CAGTG	8 cut(s)	219, 591, 2640, 2756, 3246, 3662, 3710, 3811
BveI	ACCTGC	2 cut(s)	2145, 3915
CaiI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2957, 2983
CciI	TCATGA	1 cut(s)	1531
CfoI	GCGC	4 cut(s)	92, 120, 170, 416
Cfr10I	RCCGGY	3 cut(s)	455, 570, 1545
Cfr13I	GGNCC	4 cut(s)	736, 1202, 2154, 3416
Cfr42I	CCGCGG	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	663
CseI	GACGC	4 cut(s)	714, 749, 1742, 2475
Csp6I	GTAC	5 cut(s)	397, 1872, 2164, 2315, 3936
CspAI	ACCGGT	1 cut(s)	570
CviQI	GTAC	5 cut(s)	397, 1872, 2164, 2315, 3936
DinI	GGCGCC	2 cut(s)	119, 169
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	6 cut(s)	420, 457, 1035, 2328, 2509, 2916
EagI	CGGCCG	2 cut(s)	420, 457
Eam1104I	CTCTTC	4 cut(s)	1110, 1305, 3439, 3806
EarI	CTCTTC	4 cut(s)	1110, 1305, 3439, 3806
Ecl136II	GAGCTC	2 cut(s)	217, 553
EclXI	CGGCCG	2 cut(s)	420, 457
Eco105I	TACGTA	1 cut(s)	1843
Eco130I	CCWWGG	5 cut(s)	830, 1637, 1768, 3003, 3882
Eco24I	GRGCYC	2 cut(s)	219, 555
Eco31I	GGTCTC	3 cut(s)	136, 3609, 3782
Eco32I	GATATC	1 cut(s)	2580
Eco47I	GGWCC	2 cut(s)	736, 2154
Eco47III	AGCGCT	1 cut(s)	415
Eco52I	CGGCCG	2 cut(s)	420, 457
Eco53kI	GAGCTC	2 cut(s)	217, 553
Eco57I	CTGAAG	6 cut(s)	308, 567, 693, 1541, 3054, 3787
Eco88I	CYCGRG	1 cut(s)	3017
Eco91I	GGTNACC	1 cut(s)	850
EcoICRI	GAGCTC	2 cut(s)	217, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	1609
EcoO109I	RGGNCCY	1 cut(s)	3416
EcoO65I	GGTNACC	1 cut(s)	850
EcoRII	CCWGG	9 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511, 3349, 3596
EcoRV	GATATC	1 cut(s)	2580
EcoT14I	CCWWGG	5 cut(s)	830, 1637, 1768, 3003, 3882
EcoT22I	ATGCAT	1 cut(s)	3229
EcoT38I	GRGCYC	2 cut(s)	219, 555
EgeI	GGCGCC	2 cut(s)	119, 169
EheI	GGCGCC	2 cut(s)	119, 169
ErhI	CCWWGG	5 cut(s)	830, 1637, 1768, 3003, 3882
Esp3I	CGTCTC	1 cut(s)	3194
FalI	AAGNNNNNCTT	2 cut(s)	3764, 3796
FaqI	GGGAC	3 cut(s)	95, 749, 2006
FauI	CCCGC	4 cut(s)	149, 298, 1084, 1611
FauNDI	CATATG	1 cut(s)	1276
FblI	GTMKAC	3 cut(s)	703, 1407, 1633
FriOI	GRGCYC	2 cut(s)	219, 555
FspBI	CTAG	5 cut(s)	752, 1133, 1388, 1785, 3503
GlaI	GCGC	4 cut(s)	91, 119, 169, 415
GsaI	CCCAGC	4 cut(s)	2684, 2887, 2954, 2990
GsuI	CTGGAG	6 cut(s)	41, 243, 579, 2214, 2664, 2747
HaeII	RGCGCY	3 cut(s)	121, 171, 417
HaeIII	GGCC	8 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2918, 3418
HapII	CCGG	8 cut(s)	291, 419, 456, 460, 571, 1546, 1863, 3619
HgaI	GACGC	4 cut(s)	714, 749, 1742, 2475
HhaI	GCGC	4 cut(s)	92, 120, 170, 416
Hin1I	GRCGYC	4 cut(s)	118, 168, 272, 2486
Hin6I	GCGC	4 cut(s)	90, 118, 168, 414
HinP1I	GCGC	4 cut(s)	90, 118, 168, 414
HincII	GTYRAC	1 cut(s)	1837
HindII	GTYRAC	1 cut(s)	1837
HindIII	AAGCTT	5 cut(s)	245, 1319, 1553, 1653, 2337
HpaI	GTTAAC	1 cut(s)	1837
HpaII	CCGG	8 cut(s)	291, 419, 456, 460, 571, 1546, 1863, 3619
Hpy166II	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1837, 2317
Hpy8I	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1837, 2317
Hpy99I	CGWCG	5 cut(s)	277, 428, 437, 765, 1736
HpyCH4IV	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
HpySE526I	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
Hsp92I	GRCGYC	4 cut(s)	118, 168, 272, 2486
HspAI	GCGC	4 cut(s)	90, 118, 168, 414
KasI	GGCGCC	2 cut(s)	117, 167
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	1837
KspI	CCGCGG	1 cut(s)	188
LguI	GCTCTTC	1 cut(s)	1110
MaeI	CTAG	5 cut(s)	752, 1133, 1388, 1785, 3503
MaeII	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
MbiI	CCGCTC	1 cut(s)	296
MfeI	CAATTG	4 cut(s)	279, 1707, 2378, 3077
MflI	RGATCY	5 cut(s)	1668, 2686, 3575, 3621, 3917
MhlI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
MlsI	TGGCCA	1 cut(s)	2511
MluNI	TGGCCA	1 cut(s)	2511
Mly113I	GGCGCC	2 cut(s)	118, 168
MlyI	GAGTC	2 cut(s)	234, 3284
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	2511
Mph1103I	ATGCAT	1 cut(s)	3229
MroNI	GCCGGC	1 cut(s)	455
MroXI	GAANNNNTTC	3 cut(s)	2046, 2603, 3448
MscI	TGGCCA	1 cut(s)	2511
MslI	CAYNNNNRTG	2 cut(s)	584, 2893
Msp20I	TGGCCA	1 cut(s)	2511
MspA1I	CMGCKG	6 cut(s)	187, 392, 923, 1091, 1561, 2684
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	8 cut(s)	291, 419, 456, 460, 571, 1546, 1863, 3619
MunI	CAATTG	4 cut(s)	279, 1707, 2378, 3077
Mva1269I	GAATGC	3 cut(s)	539, 1003, 3784
MvaI	CCWGG	9 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513, 3351, 3598
MvnI	CGCG	4 cut(s)	90, 104, 187, 350
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	2 cut(s)	118, 168
NciI	CCSGG	2 cut(s)	461, 1864
NcoI	CCATGG	3 cut(s)	1768, 3003, 3882
NdeI	CATATG	1 cut(s)	1276
NgoMIV	GCCGGC	1 cut(s)	455
NlaIV	GGNNCC	8 cut(s)	119, 169, 388, 737, 1868, 2324, 3899, 3919
NmeAIII	GCCGAG	3 cut(s)	128, 1063, 2356
NsiI	ATGCAT	1 cut(s)	3229
NspI	RCATGY	2 cut(s)	2827, 2857
OliI	CACNNNNGTG	1 cut(s)	584
PagI	TCATGA	1 cut(s)	1531
PasI	CCCWGGG	1 cut(s)	3350
PciSI	GCTCTTC	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	3 cut(s)	539, 1003, 3784
PdiI	GCCGGC	1 cut(s)	457
PdmI	GAANNNNTTC	3 cut(s)	2046, 2603, 3448
Pfl23II	CGTACG	1 cut(s)	3935
PfoI	TCCNGGA	1 cut(s)	595
PinAI	ACCGGT	1 cut(s)	570
PleI	GAGTC	2 cut(s)	233, 3284
PluTI	GGCGCC	2 cut(s)	121, 171
PpsI	GAGTC	2 cut(s)	233, 3284
Ppu21I	YACGTR	1 cut(s)	1843
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	3 cut(s)	2697, 2994, 3144
PsiI	TTATAA	2 cut(s)	1269, 3753
Psp124BI	GAGCTC	2 cut(s)	219, 555
Psp6I	CCWGG	9 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511, 3349, 3596
PspEI	GGTNACC	1 cut(s)	850
PspFI	CCCAGC	4 cut(s)	2680, 2883, 2950, 2986
PspGI	CCWGG	9 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511, 3349, 3596
PspLI	CGTACG	1 cut(s)	3935
PspN4I	GGNNCC	8 cut(s)	119, 169, 388, 737, 1868, 2324, 3899, 3919
PspPI	GGNCC	4 cut(s)	736, 1202, 2154, 3416
PstI	CTGCAG	2 cut(s)	1006, 3139
PstNI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2957, 2983
PsuI	RGATCY	5 cut(s)	1668, 2686, 3575, 3621, 3917
PvuII	CAGCTG	2 cut(s)	923, 1561
RsaI	GTAC	5 cut(s)	398, 1873, 2165, 2316, 3937
RsaNI	GTAC	5 cut(s)	397, 1872, 2164, 2315, 3936
RseI	CAYNNNNRTG	2 cut(s)	584, 2893
SacI	GAGCTC	2 cut(s)	219, 555
SacII	CCGCGG	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	1110
Sau96I	GGNCC	4 cut(s)	736, 1202, 2154, 3416
SchI	GAGTC	2 cut(s)	234, 3284
SduI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
SfcI	CTRYAG	4 cut(s)	1002, 2298, 3123, 3135
SfoI	GGCGCC	2 cut(s)	119, 169
Sfr303I	CCGCGG	1 cut(s)	188
SgrBI	CCGCGG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	736, 2154
SmiMI	CAYNNNNRTG	2 cut(s)	584, 2893
SmlI	CTYRAG	3 cut(s)	725, 1070, 1340
SmoI	CTYRAG	3 cut(s)	725, 1070, 1340
SnaBI	TACGTA	1 cut(s)	1843
SspDI	GGCGCC	2 cut(s)	117, 167
SspI	AATATT	4 cut(s)	1048, 1066, 2283, 2527
SspMI	CTAG	5 cut(s)	752, 1133, 1388, 1785, 3503
SstI	GAGCTC	2 cut(s)	219, 555
StyI	CCWWGG	5 cut(s)	830, 1637, 1768, 3003, 3882
TaiI	ACGT	5 cut(s)	176, 275, 453, 1420, 1845
TaqI	TCGA	7 cut(s)	435, 627, 663, 1506, 1970, 3533, 3738
TaqII	GACCGA	1 cut(s)	2171
TatI	WGTACW	2 cut(s)	2163, 2314
TauI	GCSGC	7 cut(s)	43, 256, 259, 392, 431, 2785, 3948
TscAI	CASTG	8 cut(s)	226, 591, 2647, 2763, 3253, 3669, 3717, 3811
TspDTI	ATGAA	7 cut(s)	17, 636, 804, 1041, 1520, 1548, 2883
TspGWI	ACGGA	3 cut(s)	869, 1298, 3176
TspRI	CASTG	8 cut(s)	226, 591, 2647, 2763, 3253, 3669, 3717, 3811
Vha464I	CTTAAG	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	736, 2154
VspI	ATTAAT	3 cut(s)	2697, 2994, 3144
XagI	CCTNNNNNAGG	1 cut(s)	1609
XapI	RAATTY	4 cut(s)	1539, 3253, 3283, 3930
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	2 cut(s)	2827, 2857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3889
XmiI	GTMKAC	3 cut(s)	703, 1407, 1633
XmnI	GAANNNNTTC	3 cut(s)	2046, 2603, 3448
XspI	CTAG	5 cut(s)	752, 1133, 1388, 1785, 3503
ZraI	GACGTC	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	3229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.