Rroxscaffold_1G00009000

Protein TIC110, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
11300469 .. 11308383
7915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009000.1

Sequence Viewer

Length: 3822 bp
ATGAATCCCTCCACCCTCCTCGCTCCGCCTTCTTCAACGCCGCAGCGTTCAATTCTCCAGTCGCAGTTCCTCAACTCTATCCCTCTCCGCGCCACCACCCCCGCAACCGTCCCACGACGCCGTTTCAGGGTCTCATTTCCCCGCAACTCGGCTGCCCAGTCGGACGGCGCCACGTCACCACCCCCGCCGACAGATGTCTTTGGGGGCAAGAGAGAGCTCACTGGAGTCCAGCCCCTTGTGGAGAAGCTTTCGCCGCCGCTAAGGTTGGTGACGTCGGCAATTGTGGTCGCCGGAGCGGTGGCTGCGGGTTACGGGTTGGGGCTTCGGGTCGGGAAGACCCAGAACACCGCGTTGGGTGGGGCTGTGGTGCTCGGAGCTGCTGGAGGAGCCGCTGTGTACGCTTTGAACGCCAGCGCTCCGGCCGTCGCCGCCGTCGATTTGCACAACTACGTTGCCGGCCGGGATGACCCCAGAGCTGTGAAGAAGGAGGATATTGAAGGCATTGCGAAAAAGTATGGTGTGAGTAAGCAAGATGAGGCATTCAATGCGGAGCTCTGTGATTTATACTGCCGGTTCGTCACTTCAGTGATACCTCCAGGAAGTGAAGAACTTAAAGGGGATGAAGTCGATACCATAGTGAACTTCAAAAATGCTCTGGGCATTGATGACCCTGAAGCAGCTTCAATGCACATGGAGATTGGTAGACGAATTTTCAGACAGAGGCTTGAGACTGGGGATCGTGAAGTGGTGGAGGGATATAGAGCTTTGACCATTGTTAGTGACCCTCCAGTGCAGGCATTTCAGAAGCTGATATATGTTTCAACACTTGTGTTTGGAGATGCTTCATCTTTCCTCTTGCCTTGGAAGCGTGTTTTCAAGGTCACCGATTCCCAGGTGGAGATTGCTATCCGTGATAATGCACAGAGGTTATATGCTTCCAAGCTAAAATCAGCTGGCAGAGATATTGATGCAGAGCCACTTGTTAGGCTTAGAGAAGCACAACTCATGTATCGGCTTTCTGATGAGAATGCTGCAGACTTGTTCAAGGAGCACACAAGAAAACTGGCCGAGGAAAATATTTCATCAGCACTCAATATACTCAAGTCCAGAACAAGAACAGCATTAAGATTTCCAGGGGGTGTCACACGAGTTGTGGAGGAGCTTGATAAGGTTCTTGCACTCAATAGTTTGCTCATCTCACTAAAGAACCAGCCAGATGCTGTTCGCTTTGCACCTGGTGTTGGGCCAATTTCTTTACTTGGGGGTGATTATTATGGTGATAGAAAGATAGATGACTTGAAGCACCTTTATAGAGCATATATCACGGATGCTTTATCAGGGGGTCGCTTGGAAGAGAATAAGCTTTCTGCATTGAATCAGCTTAAGAATATATTTGGGTTGGGCAACCGAGAGGCAGAAGCCATTGTGCTAGATGTTACTTCAAAGGTATACCGTAAACGTCTTTCACAGGCTGTTAGTGGAGGTGATTTGGAAGCAGCAGATAGCAAAGCAGCCTTCCTTCAAGGTATCTGTGAGGAGCTGCACTTTGATCCACAGAAGGCGAGTGGGATTCATGAAGAAATTTACCGGCAGAAGCTTCAGCTGTGTGTTGCTGATGGAGAGCTTGATGAGGAGGATGTTGCTGCCTTGTTAAGGTTGCGGGTCTTGCTATGTATACCAAAGGAAACTGTTGAAGCTGCCCATACAGAGATCTGTGGCAGTTTGTTTGAAAAGCTTGTGAAGGATGCAATTGCATCCGGTGTTGATGGATACGACGCTGATGTGAAATTAGCTGTCAGAAAGGCAGCCCATGGCTTGCGATTGACGAGGAGGCAGCCATGTCTATTGCAAGCAAGGCAAAGGATTTTTGTTAACTACGTAAAACGAGCACGGGCAGCGGGGAACCGTGCTGAGGCTGCAAAAGAACTTAAAAAGCTGATAGCCTTCAACACATTGGTTGTGACTGAATTAGTGGCAGACATAAAAGGGGAATCATCTGATACATCGACAGATGAGCCAACAAAGGAGAAAGAAGAACTTGCTGCGAAGTTGGGGAAGCCTGGTCAGACTGAGATAACTCTGAAAGATGACCTGCAAGAAAGAGAGAGGACCGACCTGTACAAAACATACTTGCTTTTTTGTATAACTGGAGAAGTGAAGAAGATTCCATTTGGTGCTCAGATCACTACAAAGAAGGATGATTCAGAGTATCTGCTACTAAATCAGCTTGGAGCAATATTGGGTTTGAGCACTACAGAGGTCGTGGAAGTACACAGGAGCCTGGCCGAGCAAGCTTTCAGGCAACAAGCAGAGGTGATTTTAGCAGACGGACAATTGACAAAAGCCAGGGTAGAGCAACTTGATGAGTTGCAGAAGCAAGTTGGGCTGCCTCCACAATATGTTCAAAAGATAATAAAGAGTATAACAACTACAAAAATGGCATCTGCCATTGAAACAGCTATTGGCCAGGGGAGGCTCAATATTAAGCAGATAAGAGAACTTAAACAATCAAGTGTTGATTTAGAAAGCATGATATCTGAGAGCTTGCGAGAGAACCTATTCAAAAAAACTGTTGATGAGATATTCTCATCAGGCACTGGAGAATTTGATGAGGAGGAAGTCTATGAGAAAATCCCAGCGGATCTCAACATTAATGTCAAGAAGGCAAGAGGTGTAGTTCTGGAGCTTGCAAAGAGCAGATTATCTAATTCACTGATTCAAGCTGTGTCACTTTTGCGGCAGAGAAATCGTCAAGGAGTGGTTTCTTCTCTTAATGACATGCTGGCTTGTGATAAAGCTGTGCCTGCCCAGCCACTTTCATGGGATGTTCCAGAGGAGCTGGCCGATCTGTTTGCCATATACCTGAAAAGTGACCCAGCACCTGAGAAACTGTCACGCTTGCAGTATCTGCTGGGCATTAATGATTCCATGGCAGCTTCCCTCGGGGAGATGGGAGACAGATTATCCCCTGCTGGTGCAGAGGAAAACATAGCTTCAGCACAATTGTCCTCAGATTACTATGCAACAAGATGCCCGAAAGCCCTTTCTACTGTTCGGACTGCAGTTATTAATGCAGTGGGATGTGATGCATCTGTTCTATTAGATGACACTGCAAATTTTACTGGGGAGAAAACAGCTTTACCAAATTTGGACTCTATAAGAGGATTTGAAGTGATTGATACTATAAAATCTCAACTGGAAAGTATCTGCCCCGGGGTTGTTTCCTGTGCAGACATCCTTGCCATTGCAGCCCGTGATTCAGTTGTTTCATTGGGAGGGCCTTCGTGGATAGTTCAGTTAGGCAGAAGAGATTCCACCACAGCAAGTTTAAGTGCTGCAAATACTGATCTCCCATCTCCAAGCCTAGATGTTAATGACCTCATCTCTGCCTTCTCGAATAAAGGCTTTAGTGCCAAAGATTTGGTAGCTCTCTCAGGATCTCACACAATGGGTCAAGCCAGGTGTGTATTGTTCCGAGACCGGATCTATAATGAGACTAACATCAACTCAGCACTTGCTACATCACTAAAATCAAACTGTCCAAGCTCAGGGAGTGATGGCAACCTTTCCCCACTGGATGTTACAAGTCCTGTTTTCTTCGACAACGCTTATTATAAGAACTTGGTTAATAACAAGGGTCTCTTGCATTCTGACCAACAACTCTTCAGTGGTGGTTCAACGGATTCTCAGGTTACAACTTACAGCACCACCCCTTCAGCTTTCTTTGTAGATTTTGCCAATGCCATGGTGAAAATGGGGAACCTCAACCTGCTTACTGGATCCAATGGTCAAATTCGCACTGACTGCCGCAAAATAAATTAA

Protein Analysis

1273

Amino Acids

138.23

Weight (kDa)

5.89

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tic110 PF16940 73 - 658 3.2e-271 Chloroplast envelope transporter
peroxidase PF00141 1026 - 1235 2.1e-68 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06950
fragaria_vesca FvH4_3g40080
malus_domestica MD03G1058800.v1.1 MD11G1060900.v1.1
prunus_persica Prupe.6G045000_v2.0.a1
pyrus_communis pycom03g04710 pycom11g05040
rosa_chinensis RchiOBHm_Chr5g0072271
rosa_laevigata RLG00000036290
rosa_multiflora Rmu_sc0000714.1_g000010
rosa_roxburghii Rroxscaffold_1G00009000
rosa_rugosa Rorug05G0417400
rosa_samantha Rh5AG473200 Rh5BG493500 Rh5CG517500 Rh5DG505400
rosa_wichuraiana Rw5G043970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3615
AatII GACGTC 1 cut(s) 275
Acc36I ACCTGC 2 cut(s) 2100, 3777
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 296
AccI GTMKAC 3 cut(s) 703, 1449, 1675
AccII CGCG 2 cut(s) 90, 350
AclWI GGATC 7 cut(s) 744, 1544, 2649, 3445, 3491, 3774, 3787
AcoI YGGCCR 6 cut(s) 420, 457, 1065, 2283, 2464, 2841
AcsI RAATTY 6 cut(s) 708, 1581, 2603, 3115, 3145, 3792
AcuI CTGAAG 6 cut(s) 567, 693, 1583, 2979, 3649, 3699
AcyI GRCGYC 3 cut(s) 118, 168, 272
AdeI CACNNNGTG 1 cut(s) 1238
AfaI GTAC 3 cut(s) 398, 2120, 2271
AfeI AGCGCT 1 cut(s) 415
AfiI CCNNNNNNNGG 6 cut(s) 127, 148, 1241, 1653, 1912, 3548
AflII CTTAAG 1 cut(s) 1382
AjiI CACGTC 1 cut(s) 174
AjnI CCWGG 9 cut(s) 595, 891, 1132, 1234, 2059, 2280, 2345, 2466, 3458
AjuI GAANNNNNNNTTGG 4 cut(s) 335, 367, 2445, 2477
AleI CACNNNNGTG 1 cut(s) 584
Alw21I GWGCWC 7 cut(s) 219, 372, 555, 1053, 1891, 2179, 2252
Alw26I GTCTC 6 cut(s) 136, 722, 2949, 3471, 3488, 3644
AlwI GGATC 7 cut(s) 744, 1544, 2649, 3445, 3491, 3774, 3787
AlwNI CAGNNNCTG 5 cut(s) 808, 1220, 2597, 2882, 2908
Ama87I CYCGRG 2 cut(s) 2942, 3212
Aor51HI AGCGCT 1 cut(s) 415
AoxI GGCC 8 cut(s) 420, 457, 1065, 1244, 2283, 2464, 2841, 3278
ApoI RAATTY 6 cut(s) 708, 1581, 2603, 3115, 3145, 3792
AseI ATTAAT 3 cut(s) 2652, 2919, 3069
Asp700I GAANNNNTTC 2 cut(s) 2558, 3310
AspLEI GCGC 3 cut(s) 92, 170, 416
AspS9I GGNCC 3 cut(s) 1244, 2109, 3278
AsuC2I CCSGG 3 cut(s) 461, 3213, 3214
AsuHPI GGTGA 8 cut(s) 168, 280, 874, 1277, 1289, 1496, 2326, 3760
AvaI CYCGRG 2 cut(s) 2942, 3212
AvaII GGWCC 1 cut(s) 2109
BaeI ACNNNNGTAYC 4 cut(s) 621, 654, 992, 1025
BalI TGGCCA 1 cut(s) 2466
BamHI GGATCC 1 cut(s) 3779
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 2 cut(s) 219, 555
BauI CACGAG 1 cut(s) 1146
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 7 cut(s) 219, 372, 555, 1053, 1891, 2179, 2252
BbvCI CCTCAGC 1 cut(s) 1911
BccI CCATC 5 cut(s) 1610, 1760, 2944, 3361, 3551
BceAI ACGGC 4 cut(s) 105, 181, 407, 416
BcgI CGANNNNNNTGC 4 cut(s) 2729, 2763, 2834, 2868
BciT130I CCWGG 9 cut(s) 597, 893, 1134, 1236, 2061, 2282, 2347, 2468, 3460
BciVI GTATCC 1 cut(s) 1763
BcnI CCSGG 3 cut(s) 461, 3213, 3214
BcoDI GTCTC 6 cut(s) 136, 722, 2949, 3471, 3488, 3644
BfaI CTAG 2 cut(s) 1430, 3365
BfmI CTRYAG 3 cut(s) 1032, 2253, 3060
BfoI RGCGCY 2 cut(s) 171, 417
BfrI CTTAAG 1 cut(s) 1382
BfuAI ACCTGC 2 cut(s) 2100, 3777
BfuI GTATCC 1 cut(s) 1763
BglII AGATCT 1 cut(s) 1710
Bme18I GGWCC 1 cut(s) 2109
BmeT110I CYCGRG 2 cut(s) 2942, 3212
BmgBI CACGTC 1 cut(s) 174
BmgT120I GGNCC 3 cut(s) 1244, 2109, 3278
BmiI GGNNCC 6 cut(s) 169, 388, 1904, 2279, 3761, 3781
BmrI ACTGGG 3 cut(s) 151, 741, 3132
BmuI ACTGGG 3 cut(s) 151, 741, 3132
BoxI GACNNNNGTC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 2570, 2602
BpmI CTGGAG 8 cut(s) 41, 243, 402, 579, 771, 2169, 2619, 2702
Bpu10I CCTNAGC 3 cut(s) 260, 1911, 3547
BpuEI CTTGAG 2 cut(s) 746, 1085
BpuMI CCSGG 3 cut(s) 461, 3213, 3214
BsaAI YACGTR 1 cut(s) 1879
BsaBI GATNNNNATC 1 cut(s) 905
BsaHI GRCGYC 3 cut(s) 118, 168, 272
BsaI GGTCTC 3 cut(s) 136, 3471, 3644
BsaWI WCCGGW 2 cut(s) 1757, 3480
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 6 cut(s) 127, 148, 1241, 1653, 1912, 3548
Bse118I RCCGGY 3 cut(s) 455, 570, 1587
Bse3DI GCAATG 2 cut(s) 501, 3243
Bse8I GATNNNNATC 1 cut(s) 905
BseBI CCWGG 9 cut(s) 597, 893, 1134, 1236, 2061, 2282, 2347, 2468, 3460
BseJI GATNNNNATC 1 cut(s) 905
BseLI CCNNNNNNNGG 6 cut(s) 127, 148, 1241, 1653, 1912, 3548
BseMI GCAATG 2 cut(s) 501, 3243
BseRI GAGGAG 8 cut(s) 8, 399, 1172, 1550, 1646, 1843, 2627, 2849
BseX3I CGGCCG 2 cut(s) 420, 457
BseYI CCCAGC 4 cut(s) 2635, 2808, 2875, 2911
BsgI GTGCAG 4 cut(s) 812, 1526, 2997, 3249
Bsh1236I CGCG 2 cut(s) 90, 350
Bsh1285I CGRYCG 2 cut(s) 423, 460
BshFI GGCC 8 cut(s) 422, 459, 1067, 1246, 2285, 2466, 2843, 3280
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 2 cut(s) 423, 460
BsiHKAI GWGCWC 7 cut(s) 219, 372, 555, 1053, 1891, 2179, 2252
BsiHKCI CYCGRG 2 cut(s) 2942, 3212
BsiSI CCGG 9 cut(s) 291, 419, 456, 460, 571, 1588, 1758, 3213, 3481
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 6 cut(s) 127, 148, 1241, 1653, 1912, 3548
BsmAI GTCTC 6 cut(s) 136, 722, 2949, 3471, 3488, 3644
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 3 cut(s) 539, 1033, 3646
BsnI GGCC 8 cut(s) 422, 459, 1067, 1246, 2285, 2466, 2843, 3280
Bso31I GGTCTC 3 cut(s) 136, 3471, 3644
BsoBI CYCGRG 2 cut(s) 2942, 3212
Bsp1286I GDGCHC 7 cut(s) 219, 372, 555, 1053, 1891, 2179, 2252
Bsp1407I TGTACA 1 cut(s) 2118
Bsp19I CCATGG 3 cut(s) 1810, 2928, 3744
BspANI GGCC 8 cut(s) 422, 459, 1067, 1246, 2285, 2466, 2843, 3280
BspFNI CGCG 2 cut(s) 90, 350
BspHI TCATGA 1 cut(s) 1573
BspLI GGNNCC 6 cut(s) 169, 388, 1904, 2279, 3761, 3781
BspMAI CTGCAG 2 cut(s) 1036, 3064
BspMI ACCTGC 2 cut(s) 2100, 3777
BspPI GGATC 7 cut(s) 744, 1544, 2649, 3445, 3491, 3774, 3787
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 1382
BspTNI GGTCTC 3 cut(s) 136, 3471, 3644
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 501, 3243
BsrFI RCCGGY 3 cut(s) 455, 570, 1587
BsrGI TGTACA 1 cut(s) 2118
BssAI RCCGGY 3 cut(s) 455, 570, 1587
BssNAI GTATAC 2 cut(s) 1450, 1676
BssNI GRCGYC 3 cut(s) 118, 168, 272
BssSI CACGAG 1 cut(s) 1146
BssT1I CCWWGG 4 cut(s) 860, 1810, 2928, 3744
Bst1107I GTATAC 2 cut(s) 1450, 1676
Bst2BI CACGAG 1 cut(s) 1146
Bst2UI CCWGG 9 cut(s) 597, 893, 1134, 1236, 2061, 2282, 2347, 2468, 3460
Bst4CI ACNGT 8 cut(s) 109, 1454, 1690, 1907, 2572, 2892, 3052, 3539
Bst6I CTCTTC 3 cut(s) 1347, 3301, 3668
BstACI GRCGYC 3 cut(s) 118, 168, 272
BstAFI CTTAAG 1 cut(s) 1382
BstAPI GCANNNNNTGC 3 cut(s) 545, 2908, 3804
BstAUI TGTACA 1 cut(s) 2118
BstBAI YACGTR 1 cut(s) 1879
BstDSI CCRYGG 3 cut(s) 1810, 2928, 3744
BstEII GGTNACC 1 cut(s) 880
BstENI CCTNNNNNAGG 1 cut(s) 1651
BstFNI CGCG 2 cut(s) 90, 350
BstH2I RGCGCY 2 cut(s) 171, 417
BstHHI GCGC 3 cut(s) 92, 170, 416
BstMAI GTCTC 6 cut(s) 136, 722, 2949, 3471, 3488, 3644
BstMCI CGRYCG 2 cut(s) 423, 460
BstNI CCWGG 9 cut(s) 597, 893, 1134, 1236, 2061, 2282, 2347, 2468, 3460
BstNSI RCATGY 1 cut(s) 2782
BstPAI GACNNNNGTC 1 cut(s) 194
BstPI GGTNACC 1 cut(s) 880
BstSFI CTRYAG 3 cut(s) 1032, 2253, 3060
BstSNI TACGTA 1 cut(s) 1879
BstUI CGCG 2 cut(s) 90, 350
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 5 cut(s) 1710, 2641, 3437, 3483, 3779
BstXI CCANNNNNNTGG 3 cut(s) 2820, 3421, 3745
BstYI RGATCY 5 cut(s) 1710, 2641, 3437, 3483, 3779
BstZ17I GTATAC 2 cut(s) 1450, 1676
BstZI CGGCCG 2 cut(s) 420, 457
BsuI GTATCC 1 cut(s) 1763
BsuRI GGCC 8 cut(s) 422, 459, 1067, 1246, 2285, 2466, 2843, 3280
BtgI CCRYGG 3 cut(s) 1810, 2928, 3744
BtrI CACGTC 1 cut(s) 174
BtsI GCAGTG 2 cut(s) 3081, 3108
BveI ACCTGC 2 cut(s) 2100, 3777
CaiI CAGNNNCTG 5 cut(s) 808, 1220, 2597, 2882, 2908
CciI TCATGA 1 cut(s) 1573
CfoI GCGC 3 cut(s) 92, 170, 416
Cfr10I RCCGGY 3 cut(s) 455, 570, 1587
Cfr13I GGNCC 3 cut(s) 1244, 2109, 3278
Cfr9I CCCGGG 1 cut(s) 3212
CseI GACGC 2 cut(s) 126, 1784
CsiI ACCWGGT 1 cut(s) 1234
Csp6I GTAC 3 cut(s) 397, 2119, 2270
CviQI GTAC 3 cut(s) 397, 2119, 2270
DinI GGCGCC 1 cut(s) 169
DraIII CACNNNGTG 1 cut(s) 1238
EaeI YGGCCR 6 cut(s) 420, 457, 1065, 2283, 2464, 2841
EagI CGGCCG 2 cut(s) 420, 457
Eam1104I CTCTTC 3 cut(s) 1347, 3301, 3668
EarI CTCTTC 3 cut(s) 1347, 3301, 3668
EciI GGCGGA 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 217, 553
EclXI CGGCCG 2 cut(s) 420, 457
Eco105I TACGTA 1 cut(s) 1879
Eco130I CCWWGG 4 cut(s) 860, 1810, 2928, 3744
Eco24I GRGCYC 2 cut(s) 219, 555
Eco31I GGTCTC 3 cut(s) 136, 3471, 3644
Eco32I GATATC 1 cut(s) 2535
Eco47I GGWCC 1 cut(s) 2109
Eco47III AGCGCT 1 cut(s) 415
Eco52I CGGCCG 2 cut(s) 420, 457
Eco53kI GAGCTC 2 cut(s) 217, 553
Eco57I CTGAAG 6 cut(s) 567, 693, 1583, 2979, 3649, 3699
Eco88I CYCGRG 2 cut(s) 2942, 3212
Eco91I GGTNACC 1 cut(s) 880
EcoICRI GAGCTC 2 cut(s) 217, 553
EcoNI CCTNNNNNAGG 1 cut(s) 1651
EcoO109I RGGNCCY 1 cut(s) 3278
EcoO65I GGTNACC 1 cut(s) 880
EcoRII CCWGG 9 cut(s) 595, 891, 1132, 1234, 2059, 2280, 2345, 2466, 3458
EcoRV GATATC 1 cut(s) 2535
EcoT14I CCWWGG 4 cut(s) 860, 1810, 2928, 3744
EcoT22I ATGCAT 1 cut(s) 3091
EcoT38I GRGCYC 2 cut(s) 219, 555
EgeI GGCGCC 1 cut(s) 169
EheI GGCGCC 1 cut(s) 169
ErhI CCWWGG 4 cut(s) 860, 1810, 2928, 3744
FalI AAGNNNNNCTT 4 cut(s) 2022, 2054, 3626, 3658
FaqI GGGAC 1 cut(s) 95
FauI CCCGC 6 cut(s) 109, 149, 192, 298, 1653, 1891
FblI GTMKAC 3 cut(s) 703, 1449, 1675
FriOI GRGCYC 2 cut(s) 219, 555
FspBI CTAG 2 cut(s) 1430, 3365
GlaI GCGC 3 cut(s) 91, 169, 415
GsaI CCCAGC 4 cut(s) 2639, 2812, 2879, 2915
GsuI CTGGAG 8 cut(s) 41, 243, 402, 579, 771, 2169, 2619, 2702
HaeII RGCGCY 2 cut(s) 171, 417
HaeIII GGCC 8 cut(s) 422, 459, 1067, 1246, 2285, 2466, 2843, 3280
HapII CCGG 9 cut(s) 291, 419, 456, 460, 571, 1588, 1758, 3213, 3481
HgaI GACGC 2 cut(s) 126, 1784
HhaI GCGC 3 cut(s) 92, 170, 416
Hin1I GRCGYC 3 cut(s) 118, 168, 272
Hin6I GCGC 3 cut(s) 90, 168, 414
HinP1I GCGC 3 cut(s) 90, 168, 414
HincII GTYRAC 1 cut(s) 1873
HindII GTYRAC 1 cut(s) 1873
HindIII AAGCTT 5 cut(s) 245, 1361, 1595, 1733, 2292
HpaI GTTAAC 1 cut(s) 1873
HpaII CCGG 9 cut(s) 291, 419, 456, 460, 571, 1588, 1758, 3213, 3481
HphI GGTGA 8 cut(s) 168, 280, 874, 1277, 1289, 1496, 2326, 3760
Hpy166II GTNNAC 8 cut(s) 397, 640, 704, 1450, 1457, 1676, 1873, 2272
Hpy188III TCNNGA 9 cut(s) 331, 740, 1107, 1574, 2659, 2681, 2831, 3394, 3435
Hpy8I GTNNAC 8 cut(s) 397, 640, 704, 1450, 1457, 1676, 1873, 2272
Hpy99I CGWCG 5 cut(s) 120, 277, 428, 437, 1778
HpyCH4III ACNGT 8 cut(s) 109, 1454, 1690, 1907, 2572, 2892, 3052, 3539
HpyCH4IV ACGT 5 cut(s) 173, 272, 450, 1459, 1878
HpySE526I ACGT 5 cut(s) 173, 272, 450, 1459, 1878
Hsp92I GRCGYC 3 cut(s) 118, 168, 272
HspAI GCGC 3 cut(s) 90, 168, 414
KasI GGCGCC 1 cut(s) 167
KroI GCCGGC 1 cut(s) 455
KroNI GCCGGC 1 cut(s) 457
KspAI GTTAAC 1 cut(s) 1873
MabI ACCWGGT 1 cut(s) 1234
MaeI CTAG 2 cut(s) 1430, 3365
MaeII ACGT 5 cut(s) 173, 272, 450, 1459, 1878
MbiI CCGCTC 1 cut(s) 296
MfeI CAATTG 4 cut(s) 279, 1749, 2333, 3002
MflI RGATCY 5 cut(s) 1710, 2641, 3437, 3483, 3779
MhlI GDGCHC 7 cut(s) 219, 372, 555, 1053, 1891, 2179, 2252
MlsI TGGCCA 1 cut(s) 2466
MluNI TGGCCA 1 cut(s) 2466
Mly113I GGCGCC 1 cut(s) 168
MlyI GAGTC 2 cut(s) 234, 3146
MmeI TCCRAC 1 cut(s) 141
Mox20I TGGCCA 1 cut(s) 2466
Mph1103I ATGCAT 1 cut(s) 3091
MroNI GCCGGC 1 cut(s) 455
MroXI GAANNNNTTC 2 cut(s) 2558, 3310
MscI TGGCCA 1 cut(s) 2466
MslI CAYNNNNRTG 2 cut(s) 584, 2818
Msp20I TGGCCA 1 cut(s) 2466
MspA1I CMGCKG 5 cut(s) 392, 953, 1603, 1898, 2639
MspCI CTTAAG 1 cut(s) 1382
MspI CCGG 9 cut(s) 291, 419, 456, 460, 571, 1588, 1758, 3213, 3481
MunI CAATTG 4 cut(s) 279, 1749, 2333, 3002
Mva1269I GAATGC 3 cut(s) 539, 1033, 3646
MvaI CCWGG 9 cut(s) 597, 893, 1134, 1236, 2061, 2282, 2347, 2468, 3460
MvnI CGCG 2 cut(s) 90, 350
NaeI GCCGGC 1 cut(s) 457
NarI GGCGCC 1 cut(s) 168
NciI CCSGG 3 cut(s) 461, 3213, 3214
NcoI CCATGG 3 cut(s) 1810, 2928, 3744
NgoMIV GCCGGC 1 cut(s) 455
NlaIV GGNNCC 6 cut(s) 169, 388, 1904, 2279, 3761, 3781
NmeAIII GCCGAG 3 cut(s) 128, 1093, 2311
NsiI ATGCAT 1 cut(s) 3091
NspI RCATGY 1 cut(s) 2782
OliI CACNNNNGTG 1 cut(s) 584
PagI TCATGA 1 cut(s) 1573
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PctI GAATGC 3 cut(s) 539, 1033, 3646
PdiI GCCGGC 1 cut(s) 457
PdmI GAANNNNTTC 2 cut(s) 2558, 3310
PfoI TCCNGGA 1 cut(s) 595
PleI GAGTC 2 cut(s) 233, 3146
PluTI GGCGCC 1 cut(s) 171
PpsI GAGTC 2 cut(s) 233, 3146
Ppu21I YACGTR 1 cut(s) 1879
PshAI GACNNNNGTC 1 cut(s) 194
PshBI ATTAAT 3 cut(s) 2652, 2919, 3069
PsiI TTATAA 1 cut(s) 3615
Psp124BI GAGCTC 2 cut(s) 219, 555
Psp6I CCWGG 9 cut(s) 595, 891, 1132, 1234, 2059, 2280, 2345, 2466, 3458
PspEI GGTNACC 1 cut(s) 880
PspFI CCCAGC 4 cut(s) 2635, 2808, 2875, 2911
PspGI CCWGG 9 cut(s) 595, 891, 1132, 1234, 2059, 2280, 2345, 2466, 3458
PspN4I GGNNCC 6 cut(s) 169, 388, 1904, 2279, 3761, 3781
PspPI GGNCC 3 cut(s) 1244, 2109, 3278
PstI CTGCAG 2 cut(s) 1036, 3064
PstNI CAGNNNCTG 5 cut(s) 808, 1220, 2597, 2882, 2908
PsuI RGATCY 5 cut(s) 1710, 2641, 3437, 3483, 3779
PvuII CAGCTG 2 cut(s) 953, 1603
RsaI GTAC 3 cut(s) 398, 2120, 2271
RsaNI GTAC 3 cut(s) 397, 2119, 2270
RseI CAYNNNNRTG 2 cut(s) 584, 2818
SacI GAGCTC 2 cut(s) 219, 555
Sau96I GGNCC 3 cut(s) 1244, 2109, 3278
SchI GAGTC 2 cut(s) 234, 3146
SduI GDGCHC 7 cut(s) 219, 372, 555, 1053, 1891, 2179, 2252
SexAI ACCWGGT 1 cut(s) 1234
SfcI CTRYAG 3 cut(s) 1032, 2253, 3060
SfoI GGCGCC 1 cut(s) 169
SinI GGWCC 1 cut(s) 2109
SmaI CCCGGG 1 cut(s) 3214
SmiMI CAYNNNNRTG 2 cut(s) 584, 2818
SmlI CTYRAG 3 cut(s) 725, 1100, 1382
SmoI CTYRAG 3 cut(s) 725, 1100, 1382
SnaBI TACGTA 1 cut(s) 1879
SspDI GGCGCC 1 cut(s) 167
SspI AATATT 3 cut(s) 1078, 2238, 2482
SspMI CTAG 2 cut(s) 1430, 3365
SstI GAGCTC 2 cut(s) 219, 555
StyI CCWWGG 4 cut(s) 860, 1810, 2928, 3744
TaaI ACNGT 8 cut(s) 109, 1454, 1690, 1907, 2572, 2892, 3052, 3539
TaiI ACGT 5 cut(s) 176, 275, 453, 1462, 1881
TaqI TCGA 5 cut(s) 435, 627, 2006, 3395, 3600
TaqII GACCGA 1 cut(s) 2126
TatI WGTACW 2 cut(s) 2118, 2269
TauI GCSGC 7 cut(s) 43, 256, 259, 392, 431, 2740, 3810
TspDTI ATGAA 8 cut(s) 17, 636, 834, 1071, 1562, 1590, 2808, 3258
TspGWI ACGGA 4 cut(s) 899, 1340, 2343, 3695
TspMI CCCGGG 1 cut(s) 3212
Vha464I CTTAAG 1 cut(s) 1382
VpaK11BI GGWCC 1 cut(s) 2109
VspI ATTAAT 3 cut(s) 2652, 2919, 3069
XagI CCTNNNNNAGG 1 cut(s) 1651
XapI RAATTY 6 cut(s) 708, 1581, 2603, 3115, 3145, 3792
XceI RCATGY 1 cut(s) 2782
XcmI CCANNNNNNNNNTGG 1 cut(s) 3751
XmaI CCCGGG 1 cut(s) 3212
XmiI GTMKAC 3 cut(s) 703, 1449, 1675
XmnI GAANNNNTTC 2 cut(s) 2558, 3310
XspI CTAG 2 cut(s) 1430, 3365
ZraI GACGTC 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 3091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.