Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014042

Physical Location & Seq

Genomic Coordinates Forward (+)

79076902 .. 79082703

Gene Structure 5802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG505400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGAATCCCTCCACCCTCCTCGCCCCTTCTTCTTCAACGCCGCAGCGTTCAATTCTCCAGTCGCAGTTCCTCAACCCTATCCCTCTCCGCGCCACCACCTCCGCAACCGTCCCACGACGCCGTTTCAGGGTCTCATTTCCCCGAAACTCAGCTGCCCAGTCGGACGGCGCCACGTCACCACCACCGCCGACAGATGTCTTTGGGGGCAAGAGAGAGCTCACTGGAGTCCAGCCCCTTGTGGAGAAGCTTTCGCCGCCGCTAAGGTTGGTGACGTCGGCAATTGTGTTCGCCGGAGCGGTTGCTGCGGGTTACGGGTTGGGGCTTCGGGTCGGAAAGACCCAGAACACCGCGTTGGGTGGGGCTGTGGTGCTCGGAGCTGCTGGAGGAGCTGCTGTGTACGCTTTAAATGCCAGCGCTCCGGCCGTCGCCGCCGTCGATTTGCACAACTACGTTGCCGGCCGGGATGACCCCAGAGCTGTGAAGAAGGAGGATATTGAAGGCATTGCGAAAAAGTATGGTGTGAGCAAGCAAGATGAGGCATTCAATGCGGAGCTCTGTGATTTATACTGCCGGTTCGTCACTTCAGTGATACCTCCAGGAAGTGAAGAACTTAAAGGGGATGAAGTCGATACCATAGTGAACTTCAAAAATGCTCTGGGCATGGATGACCCTGAAGCAGCTTCAATGCACATGGAGATTGGTAGACGCATTTTCAGACAGAGGCTTGAGACTGGGGACCGTGAAGGTGATCTAGAGCAGCGTCGGGCATTTCAGAAGCTGATATATGTTTCAACGCTTGTGTTTGGAGATGCTTCATCTTTCCTCTTGCCTTGGAAGCGTGTTTTCAAGGTCACCGATTCCCAGGTGGAGATTGCTATTCGTGATAATGCACAGAGGTTATATGCTTCCAAGCTAAAATCAGCTGGCAGAGATATTGATGCAGAGCCACTTGTTAGGCTTAGGGAAGCACAACTCATGTATCGGCTTTCTGATGAGAATGCTGCAGACTTGTTCAAGGAGCACACAAGAAAACTGGCCGAGGAAAATATTTCATCAGCACTCAATATACTCAAGTCCAGAACAAGAACAGCGGGGGGTGTCACACGAGTTGTGGAAGAGCTTGATAAGGTTCTAGCACTCAATAGTTTGCTCATCTCACTAAAGAACCAGCCAGATGCTGTTCGCTTTGCACCTGGGGTTGGGCCAATTTCTTTACTTGGGGGTGATTATTATGGTGATAGAAAGATAGATGACTTGAAGCACCTTTATAGAGCATATGTCACAGATTCTTTATCAGGGGGTCGCTTGGAAGAGAATAAGCTTTCTGCATTGAATCAGCTTAAGAATATATTTGGGTTAGGCAACCGAGAGGCAGAAACCATTGTGCTAGATGTTACTTCAAAGGTATACCGTAAACGTCTTTCACAGGCTGTTAGTGGGGGTGATTTGGAAGCAGCAGATAGCAAAGCAGCCTTCCTTCAAGGTATCTGTGAGGAGCTGCACTTTGATCCACAGAAGGCGAGTGGGATTCATGAAGAAATTTACCGGCAGAAGCTTCAGCTGTGTGTTGCTGATGGAGAGCTTGATGAGGAGGATGTTGCTGCCTTGTTAAGGCTGCGGGTCTTGCTATGTATACCAAAGGAAACTGTTGAAGCTGCCCATACAGAGATCTGTGGCAGTTTGTTTGAAAAGGTTGTGAAGGATGCAATTGCATCTGGTGTTGATGGATACGACGCTGATGTGAAATTAGCTGTCAGAAAGGCAGCCCATGGCTTGCGATTGACTAGGGAGGCAGCCATGTCTATTGCAAGCAAGGCAGTCAGAAGGATTTTTGTTAACTACGTAAAACGAGCACGGGCAGCTGGGAACCGTACTGAGGCTGCAAAAGAACTTAAAAAGCTGATAGCCTTCAACACATTGGTTGTGACTGAATTAGTGGCAGACATAAAGGGGGAATCATCTGATACATCGACAGATGAGCCAACAAAGGAGAAAGAAGTAAAAGAGGAAGAAGAAACGGTCCCAGAGGATGAGGAATGGGAATCTATTCAGACACTTAGAAAAATAAGACCTGACAAGGAACTTGCAGCGAAGTTGGGGAAGCCTGGTCAGACTGAGATAACTCTGAAAGATGACCTGCAAGAAAGAGAGAGGACTGACCTGTACAAAACATATTTGCTTTTTTGTATAACTGGAGAAGTGAAGAAGATTCCATTTGGTGCTCAGATCACTACAAAGAAGGATGATTCAGAGTATCTGCTACTAAATCAGCTTGGGGCAATATTGGGTTTGAGCACTACAGAGGTAGTGGAAGTACACAGGAGCCTGGCCGAGCAAGCTTTCAGGCAACAAGCAGAGGTGATTTTAGCTGATGGGCAATTGACAAAAGCCAGGGTAGAGCAACTTGATGAGTTGCAGAAGCAAGTTGGGTTGCCTCCACAATATGTTCAAAAGATAATAAAGAGCATAACAACTACAAAAATGGTGTCTGCCATTGAAACAGCTATTGGCCAGGGGAGGCTCAATATTAAGCAGATAAGAGAACTTAAACAATCAAGTGTTGATTTAGAAAGCATGATATCTGAGAGCTTGCGAGAGAACCTATTCAAAAAAACTGTTGATGAGATATTCTCATCAGGCACTGGAGAGTTTGATGAGGAGGAAGTCTATGAGAAAATCCCAGCGGATCTCAACATTAATGTCAAGAAGGCAAGAGGTGTAGTTCTGGAGCTTGCAAAGAGCAGATTATCTAATTCACTGATTCAAGCTGTGTCACTTTTGCGGCAGAGAAATCGTCAAGGAGTGGTTTCTTCTCTTAATGACATGCTGGCTTGTGATAAAGCTGTGCCTGCCCAGCCACTTTCATGGGATGTTCCAGAGGAGCTGGCCGATCTGTTTGCCATATACCTGAAAAGTGACCCAGCACCTGAGAAACTGTCACGCTTGCAGTATCTGCTGGGCATTAATGATTCCATGGCAGCTTCCCTCGGGGAGATGGGAGACAGATTATCCCCTGCTGGTGCAGAGGAAAAGTTTGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic110

Protein Analysis

1014

Amino Acids

111.37

Weight (kDa)

5.74

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tic110	PF16940	73 - 646	7.4e-291	Chloroplast envelope transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06950
fragaria_vesca	FvH4_3g40080
malus_domestica	MD03G1058800.v1.1 MD11G1060900.v1.1
prunus_persica	Prupe.6G045000_v2.0.a1
pyrus_communis	pycom03g04710 pycom11g05040
rosa_chinensis	RchiOBHm_Chr5g0072271
rosa_laevigata	RLG00000036290
rosa_multiflora	Rmu_sc0000714.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009000
rosa_rugosa	Rorug05G0417400
rosa_samantha	Rh5AG473200 Rh5BG493500 Rh5CG517500 Rh5DG505400
rosa_wichuraiana	Rw5G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	2145
AccB1I	GGYRCC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	3 cut(s)	703, 1407, 1633
AccII	CGCG	2 cut(s)	90, 350
AclWI	GGATC	2 cut(s)	1502, 2694
AcoI	YGGCCR	6 cut(s)	420, 457, 1035, 2328, 2509, 2886
AcsI	RAATTY	1 cut(s)	1539
AcuI	CTGAAG	3 cut(s)	567, 693, 1541
AcyI	GRCGYC	3 cut(s)	118, 168, 272
AfaI	GTAC	4 cut(s)	398, 1873, 2165, 2316
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	4 cut(s)	127, 1199, 1611, 1876
AflII	CTTAAG	1 cut(s)	1340
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
AjuI	GAANNNNNNNTTGG	4 cut(s)	335, 367, 2490, 2522
AleI	CACNNNNGTG	1 cut(s)	584
Alw21I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
Alw26I	GTCTC	3 cut(s)	136, 722, 2994
AlwI	GGATC	2 cut(s)	1502, 2694
AlwNI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2927, 2953
Ama87I	CYCGRG	1 cut(s)	2987
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	7 cut(s)	420, 457, 1035, 1202, 2328, 2509, 2886
ApoI	RAATTY	1 cut(s)	1539
ArsI	GACNNNNNNTTYG	2 cut(s)	2471, 2503
AseI	ATTAAT	2 cut(s)	2697, 2964
Asp700I	GAANNNNTTC	2 cut(s)	2046, 2603
AspLEI	GCGC	3 cut(s)	92, 170, 416
AspS9I	GGNCC	3 cut(s)	736, 1202, 2020
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	8 cut(s)	168, 280, 758, 844, 1235, 1247, 1454, 2371
AvaI	CYCGRG	1 cut(s)	2987
AvaII	GGWCC	2 cut(s)	736, 2020
BaeI	ACNNNNGTAYC	4 cut(s)	621, 654, 962, 995
BalI	TGGCCA	1 cut(s)	2511
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	219, 555
BauI	CACGAG	1 cut(s)	1104
Bbv12I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
BccI	CCATC	4 cut(s)	1568, 1718, 2366, 2989
BceAI	ACGGC	4 cut(s)	105, 181, 407, 416
BcgI	CGANNNNNNTGC	4 cut(s)	2774, 2808, 2879, 2913
BciT130I	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
BciVI	GTATCC	1 cut(s)	1721
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	3 cut(s)	136, 722, 2994
BfaI	CTAG	4 cut(s)	752, 1133, 1388, 1785
BfmI	CTRYAG	2 cut(s)	1002, 2298
BfoI	RGCGCY	2 cut(s)	171, 417
BfrI	CTTAAG	1 cut(s)	1340
BfuAI	ACCTGC	1 cut(s)	2145
BfuI	GTATCC	1 cut(s)	1721
BglII	AGATCT	1 cut(s)	1668
Bme1390I	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
Bme18I	GGWCC	2 cut(s)	736, 2020
BmeT110I	CYCGRG	1 cut(s)	2987
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	736, 1202, 2020
BmiI	GGNNCC	5 cut(s)	169, 737, 1868, 2022, 2324
BmrFI	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
BmrI	ACTGGG	2 cut(s)	151, 741
BmsI	GCATC	5 cut(s)	799, 928, 1165, 1693, 1721
BmuI	ACTGGG	2 cut(s)	151, 741
BoxI	GACNNNNGTC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	2615, 2647
BpmI	CTGGAG	7 cut(s)	41, 243, 402, 579, 2214, 2664, 2747
Bpu10I	CCTNAGC	2 cut(s)	260, 959
BpuEI	CTTGAG	2 cut(s)	746, 1055
BpuMI	CCSGG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	1843
BsaHI	GRCGYC	3 cut(s)	118, 168, 272
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	9 cut(s)	830, 861, 1038, 1193, 1768, 2391, 2512, 2973, 2986
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 1199, 1611, 1876
Bse118I	RCCGGY	3 cut(s)	455, 570, 1545
Bse1I	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2197, 2647
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
BseDI	CCNNGG	9 cut(s)	830, 861, 1038, 1193, 1768, 2391, 2512, 2973, 2986
BseGI	GGATG	8 cut(s)	469, 625, 670, 1600, 1708, 2035, 2248, 2875
BseLI	CCNNNNNNNGG	4 cut(s)	127, 1199, 1611, 1876
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	6 cut(s)	162, 1866, 2106, 2237, 2574, 2919
BseNI	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2197, 2647
BseRI	GAGGAG	6 cut(s)	8, 399, 1508, 1604, 2672, 2894
BseX3I	CGGCCG	2 cut(s)	420, 457
BseYI	CCCAGC	5 cut(s)	1862, 2680, 2853, 2920, 2956
BsgI	GTGCAG	2 cut(s)	1484, 3042
Bsh1236I	CGCG	2 cut(s)	90, 350
Bsh1285I	CGRYCG	2 cut(s)	423, 460
BshFI	GGCC	7 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2888
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	423, 460
BsiHKAI	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
BsiHKCI	CYCGRG	1 cut(s)	2987
BsiSI	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
BslFI	GGGAC	3 cut(s)	95, 749, 2006
BslI	CCNNNNNNNGG	4 cut(s)	127, 1199, 1611, 1876
BsmAI	GTCTC	3 cut(s)	136, 722, 2994
BsmFI	GGGAC	3 cut(s)	95, 749, 2006
BsmI	GAATGC	2 cut(s)	539, 1003
BsnI	GGCC	7 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2888
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	2987
Bsp1286I	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
Bsp1407I	TGTACA	1 cut(s)	2163
Bsp143I	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
Bsp19I	CCATGG	2 cut(s)	1768, 2973
BspANI	GGCC	7 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2888
BspCNI	CTCAG	6 cut(s)	161, 1867, 2107, 2236, 2575, 2920
BspFNI	CGCG	2 cut(s)	90, 350
BspHI	TCATGA	1 cut(s)	1531
BspLI	GGNNCC	5 cut(s)	169, 737, 1868, 2022, 2324
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	1 cut(s)	2145
BspPI	GGATC	2 cut(s)	1502, 2694
BspQI	GCTCTTC	1 cut(s)	1110
BspT107I	GGYRCC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	1340
BspTNI	GGTCTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	3 cut(s)	455, 570, 1545
BsrGI	TGTACA	1 cut(s)	2163
BsrI	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2197, 2647
BssAI	RCCGGY	3 cut(s)	455, 570, 1545
BssECI	CCNNGG	9 cut(s)	830, 861, 1038, 1193, 1768, 2391, 2512, 2973, 2986
BssMI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
BssNAI	GTATAC	2 cut(s)	1408, 1634
BssNI	GRCGYC	3 cut(s)	118, 168, 272
BssSI	CACGAG	1 cut(s)	1104
BssT1I	CCWWGG	3 cut(s)	830, 1768, 2973
Bst1107I	GTATAC	2 cut(s)	1408, 1634
Bst2BI	CACGAG	1 cut(s)	1104
Bst2UI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
Bst4CI	ACNGT	8 cut(s)	109, 740, 1412, 1648, 1871, 2020, 2617, 2937
Bst6I	CTCTTC	2 cut(s)	1110, 1305
BstACI	GRCGYC	3 cut(s)	118, 168, 272
BstAFI	CTTAAG	1 cut(s)	1340
BstAPI	GCANNNNNTGC	2 cut(s)	545, 2953
BstAUI	TGTACA	1 cut(s)	2163
BstBAI	YACGTR	1 cut(s)	1843
BstDEI	CTNAG	9 cut(s)	148, 260, 959, 1875, 2057, 2115, 2223, 2583, 2928
BstDSI	CCRYGG	2 cut(s)	1768, 2973
BstEII	GGTNACC	1 cut(s)	850
BstENI	CCTNNNNNAGG	1 cut(s)	1609
BstF5I	GGATG	8 cut(s)	469, 625, 670, 1600, 1708, 2035, 2248, 2875
BstFNI	CGCG	2 cut(s)	90, 350
BstH2I	RGCGCY	2 cut(s)	171, 417
BstHHI	GCGC	3 cut(s)	92, 170, 416
BstKTI	GATC	6 cut(s)	751, 1510, 1671, 2229, 2689, 2893
BstMAI	GTCTC	3 cut(s)	136, 722, 2994
BstMBI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
BstMCI	CGRYCG	2 cut(s)	423, 460
BstNI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
BstNSI	RCATGY	1 cut(s)	2827
BstPAI	GACNNNNGTC	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	850
BstSCI	CCNGG	8 cut(s)	459, 595, 861, 1192, 2104, 2325, 2390, 2511
BstSFI	CTRYAG	2 cut(s)	1002, 2298
BstSNI	TACGTA	1 cut(s)	1843
BstUI	CGCG	2 cut(s)	90, 350
BstX2I	RGATCY	2 cut(s)	1668, 2686
BstXI	CCANNNNNNTGG	1 cut(s)	2865
BstYI	RGATCY	2 cut(s)	1668, 2686
BstZ17I	GTATAC	2 cut(s)	1408, 1634
BstZI	CGGCCG	2 cut(s)	420, 457
BsuI	GTATCC	1 cut(s)	1721
BsuRI	GGCC	7 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2888
BtgI	CCRYGG	2 cut(s)	1768, 2973
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	8 cut(s)	469, 625, 670, 1600, 1708, 2035, 2248, 2875
BtsIMutI	CAGTG	4 cut(s)	219, 591, 2640, 2756
BveI	ACCTGC	1 cut(s)	2145
CaiI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2927, 2953
CciI	TCATGA	1 cut(s)	1531
CfoI	GCGC	3 cut(s)	92, 170, 416
Cfr10I	RCCGGY	3 cut(s)	455, 570, 1545
Cfr13I	GGNCC	3 cut(s)	736, 1202, 2020
CseI	GACGC	4 cut(s)	126, 714, 749, 1742
Csp6I	GTAC	4 cut(s)	397, 1872, 2164, 2315
CviQI	GTAC	4 cut(s)	397, 1872, 2164, 2315
DdeI	CTNAG	9 cut(s)	148, 260, 959, 1875, 2057, 2115, 2223, 2583, 2928
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	6 cut(s)	750, 1509, 1670, 2228, 2688, 2892
DpnII	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	6 cut(s)	420, 457, 1035, 2328, 2509, 2886
EagI	CGGCCG	2 cut(s)	420, 457
Eam1104I	CTCTTC	2 cut(s)	1110, 1305
EarI	CTCTTC	2 cut(s)	1110, 1305
Ecl136II	GAGCTC	2 cut(s)	217, 553
EclXI	CGGCCG	2 cut(s)	420, 457
Eco105I	TACGTA	1 cut(s)	1843
Eco130I	CCWWGG	3 cut(s)	830, 1768, 2973
Eco24I	GRGCYC	2 cut(s)	219, 555
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	2580
Eco47I	GGWCC	2 cut(s)	736, 2020
Eco47III	AGCGCT	1 cut(s)	415
Eco52I	CGGCCG	2 cut(s)	420, 457
Eco53kI	GAGCTC	2 cut(s)	217, 553
Eco57I	CTGAAG	3 cut(s)	567, 693, 1541
Eco88I	CYCGRG	1 cut(s)	2987
Eco91I	GGTNACC	1 cut(s)	850
EcoICRI	GAGCTC	2 cut(s)	217, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	1609
EcoO65I	GGTNACC	1 cut(s)	850
EcoRII	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
EcoRV	GATATC	1 cut(s)	2580
EcoT14I	CCWWGG	3 cut(s)	830, 1768, 2973
EcoT38I	GRGCYC	2 cut(s)	219, 555
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	3 cut(s)	830, 1768, 2973
FaqI	GGGAC	3 cut(s)	95, 749, 2006
FauI	CCCGC	3 cut(s)	298, 1084, 1611
FauNDI	CATATG	1 cut(s)	1276
FblI	GTMKAC	3 cut(s)	703, 1407, 1633
FokI	GGATG	8 cut(s)	476, 632, 677, 1607, 1715, 2042, 2255, 2882
FriOI	GRGCYC	2 cut(s)	219, 555
FspBI	CTAG	4 cut(s)	752, 1133, 1388, 1785
GlaI	GCGC	3 cut(s)	91, 169, 415
GsaI	CCCAGC	5 cut(s)	1866, 2684, 2857, 2924, 2960
GsuI	CTGGAG	7 cut(s)	41, 243, 402, 579, 2214, 2664, 2747
HaeII	RGCGCY	2 cut(s)	171, 417
HaeIII	GGCC	7 cut(s)	422, 459, 1037, 1204, 2330, 2511, 2888
HapII	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
HgaI	GACGC	4 cut(s)	126, 714, 749, 1742
HhaI	GCGC	3 cut(s)	92, 170, 416
Hin1I	GRCGYC	3 cut(s)	118, 168, 272
Hin6I	GCGC	3 cut(s)	90, 168, 414
HinP1I	GCGC	3 cut(s)	90, 168, 414
HincII	GTYRAC	1 cut(s)	1837
HindII	GTYRAC	1 cut(s)	1837
HindIII	AAGCTT	4 cut(s)	245, 1319, 1553, 2337
HpaI	GTTAAC	1 cut(s)	1837
HpaII	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
HphI	GGTGA	8 cut(s)	168, 280, 758, 844, 1235, 1247, 1454, 2371
Hpy166II	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1837, 2317
Hpy188III	TCNNGA	7 cut(s)	752, 881, 1077, 1532, 2704, 2726, 2876
Hpy8I	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1837, 2317
Hpy99I	CGWCG	6 cut(s)	120, 277, 428, 437, 765, 1736
HpyCH4III	ACNGT	8 cut(s)	109, 740, 1412, 1648, 1871, 2020, 2617, 2937
HpyCH4IV	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
HpyF3I	CTNAG	9 cut(s)	148, 260, 959, 1875, 2057, 2115, 2223, 2583, 2928
HpySE526I	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
Hsp92I	GRCGYC	3 cut(s)	118, 168, 272
HspAI	GCGC	3 cut(s)	90, 168, 414
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	1837
Kzo9I	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
LguI	GCTCTTC	1 cut(s)	1110
LweI	GCATC	5 cut(s)	799, 928, 1165, 1693, 1721
MaeI	CTAG	4 cut(s)	752, 1133, 1388, 1785
MaeII	ACGT	5 cut(s)	173, 272, 450, 1417, 1842
MalI	GATC	6 cut(s)	750, 1509, 1670, 2228, 2688, 2892
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
MfeI	CAATTG	3 cut(s)	279, 1707, 2378
MflI	RGATCY	2 cut(s)	1668, 2686
MhlI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
MlsI	TGGCCA	1 cut(s)	2511
MluCI	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 1931, 2378, 2752
MluNI	TGGCCA	1 cut(s)	2511
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	2 cut(s)	141, 310
Mox20I	TGGCCA	1 cut(s)	2511
MroNI	GCCGGC	1 cut(s)	455
MroXI	GAANNNNTTC	2 cut(s)	2046, 2603
MscI	TGGCCA	1 cut(s)	2511
MslI	CAYNNNNRTG	2 cut(s)	584, 2863
Msp20I	TGGCCA	1 cut(s)	2511
MspA1I	CMGCKG	6 cut(s)	152, 923, 1091, 1561, 1862, 2684
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	6 cut(s)	291, 419, 456, 460, 571, 1546
MspR9I	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
MunI	CAATTG	3 cut(s)	279, 1707, 2378
Mva1269I	GAATGC	2 cut(s)	539, 1003
MvaI	CCWGG	7 cut(s)	597, 863, 1194, 2106, 2327, 2392, 2513
MvnI	CGCG	2 cut(s)	90, 350
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	2 cut(s)	1768, 2973
NdeI	CATATG	1 cut(s)	1276
NdeII	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
NgoMIV	GCCGGC	1 cut(s)	455
NlaIV	GGNNCC	5 cut(s)	169, 737, 1868, 2022, 2324
NmeAIII	GCCGAG	2 cut(s)	1063, 2356
NspI	RCATGY	1 cut(s)	2827
OliI	CACNNNNGTG	1 cut(s)	584
PagI	TCATGA	1 cut(s)	1531
PciSI	GCTCTTC	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	2 cut(s)	539, 1003
PdiI	GCCGGC	1 cut(s)	457
PdmI	GAANNNNTTC	2 cut(s)	2046, 2603
PfoI	TCCNGGA	1 cut(s)	595
PleI	GAGTC	1 cut(s)	233
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	1843
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	2 cut(s)	2697, 2964
Psp124BI	GAGCTC	2 cut(s)	219, 555
Psp6I	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
PspEI	GGTNACC	1 cut(s)	850
PspFI	CCCAGC	5 cut(s)	1862, 2680, 2853, 2920, 2956
PspGI	CCWGG	7 cut(s)	595, 861, 1192, 2104, 2325, 2390, 2511
PspN4I	GGNNCC	5 cut(s)	169, 737, 1868, 2022, 2324
PspPI	GGNCC	3 cut(s)	736, 1202, 2020
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	5 cut(s)	778, 1178, 2642, 2927, 2953
PsuI	RGATCY	2 cut(s)	1668, 2686
PvuII	CAGCTG	4 cut(s)	152, 923, 1561, 1862
RsaI	GTAC	4 cut(s)	398, 1873, 2165, 2316
RsaNI	GTAC	4 cut(s)	397, 1872, 2164, 2315
RseI	CAYNNNNRTG	2 cut(s)	584, 2863
SacI	GAGCTC	2 cut(s)	219, 555
SapI	GCTCTTC	1 cut(s)	1110
Sau3AI	GATC	6 cut(s)	748, 1507, 1668, 2226, 2686, 2890
Sau96I	GGNCC	3 cut(s)	736, 1202, 2020
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	8 cut(s)	461, 597, 863, 1194, 2106, 2327, 2392, 2513
SduI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1855, 2224, 2297
SfaNI	GCATC	5 cut(s)	799, 928, 1165, 1693, 1721
SfcI	CTRYAG	2 cut(s)	1002, 2298
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	736, 2020
SmiMI	CAYNNNNRTG	2 cut(s)	584, 2863
SmlI	CTYRAG	3 cut(s)	725, 1070, 1340
SmoI	CTYRAG	3 cut(s)	725, 1070, 1340
SnaBI	TACGTA	1 cut(s)	1843
Sse9I	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 1931, 2378, 2752
SspDI	GGCGCC	1 cut(s)	167
SspI	AATATT	3 cut(s)	1048, 2283, 2527
SspMI	CTAG	4 cut(s)	752, 1133, 1388, 1785
SstI	GAGCTC	2 cut(s)	219, 555
StyD4I	CCNGG	8 cut(s)	459, 595, 861, 1192, 2104, 2325, 2390, 2511
StyI	CCWWGG	3 cut(s)	830, 1768, 2973
TaaI	ACNGT	8 cut(s)	109, 740, 1412, 1648, 1871, 2020, 2617, 2937
TaiI	ACGT	5 cut(s)	176, 275, 453, 1420, 1845
TaqI	TCGA	3 cut(s)	435, 627, 1970
TasI	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 1931, 2378, 2752
TatI	WGTACW	2 cut(s)	2163, 2314
TauI	GCSGC	5 cut(s)	43, 256, 259, 431, 2785
TscAI	CASTG	4 cut(s)	226, 591, 2647, 2763
TspDTI	ATGAA	7 cut(s)	17, 636, 804, 1041, 1520, 1548, 2853
TspRI	CASTG	4 cut(s)	226, 591, 2647, 2763
Vha464I	CTTAAG	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	736, 2020
VspI	ATTAAT	2 cut(s)	2697, 2964
XagI	CCTNNNNNAGG	1 cut(s)	1609
XapI	RAATTY	1 cut(s)	1539
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	2827
XmiI	GTMKAC	3 cut(s)	703, 1407, 1633
XmnI	GAANNNNTTC	2 cut(s)	2046, 2603
XspI	CTAG	4 cut(s)	752, 1133, 1388, 1785
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.