Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014042

Physical Location & Seq

Genomic Coordinates Forward (+)

81299113 .. 81304710

Gene Structure 5598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG473200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGAATCCCTCCACCCTCCTCGCCCCTTCTTCTTCAACGCCGCAGCGTTCAATTCTCCAGTCGCAGTTCCTCAACCCTATCCCTCTCCGCGCCACCGCCTCCGCGACCGTCCCACGGCGCCGTTTCAGGGTCTCATTTCCCCGCAACTCGGCTGCCCAGTCGGACGGCGCCACGTCACCACCACCGCCGACAGTTGTCTTTGGGGGCAAGAGAGAGCTCACTGGAGTCCAGCCCCTTGTGGAGAAGCTTTCGCCGCCGCTAAGGTTGGTGACGTCGGCAATTGTGTTCGCCGGAGCGGTGGCTGCGGGTTACGGGTTGGGGCTTCGGGTCGGGAAGACCCAAAACACCGCGTTGGGTGGGGCTGTGGTGCTCGGAGCTGCTGGTGGAGCCGCTGTGTACGCTTTAAATGCCAGCGCTCCGGCCGTCGCCGCCGTCGATTTGCACAACTACGTTGCCGGCCGGGATGACCCCAGAGTTGTGAAGAAGGAGGATATTGAAGGCATTGCGAAAAAGTATGGTGTGAGCAAGCAAGATGAGGCATTCAATGCGGAGCTCTGTGATTTATACTGCCGGTTCGTCACTTCAGTGATACCTCCAGGAAGTGAAGAACTTAAAGGGGATGAAGTCGATACCATAGTGAACTTCAAAAATGCTCTGGGCATCGATGACCCTGAAGCAGCTTCAATGCACATGGAGATTGGTAGACGCATTTTCAGACAGAGGCTTGAGACTGGGGACCGTGAAGGTGATCTAGAGCAGCGTCGGGCATTTCAGAAGCTGATATATGTCTCAACACTTGTGTTTGGAGATGCTTCATCTTTCCTCTTGCCTTGGAAGCGTGTTTTCAAGGTCACCGATTCCCAGGTGGAGATTGCTATCCGTGATAATGCACAGAGGTTGTATGCTTCCAAGCTAAAATCAGCTGGCAGAGATATTGATGCAGAGCCACTTGTTAGGCTTAGAGAAGCACAACTCATGTATCGGCTTTCTGATGAGAATGCTGCAGACTTGTTCAAGGAGCACACAAGAAAACTGGCCGAGGAAAATATTTCATCAGCACTCAATATACTCAAGTCCAGAACAAGAACAGCGGGGGGTGTCACACGAGTTGTGGAAGAGCTTGATAAGGTTCTAGCACTCAATAGTTTGCTCATCTCACTAAAGAACCAGCCAGATGCTGTTCGCTTTGCACCTGGGGTTGGGCCAATTTCTTTACTTGGGGGTGATTATTATGGTGATAGAAAGATAGATGACTTGAAGCACCTTTATAAAGCATATGTCACGGATTCTTTATCAGGGGGTCGCTTGGAAGAGAATAAGCTTTCTGCATTGAATCAGCTTAAGAATATATTTGGGTTAGGCAACCGAGAGGCAGAAGCCATTGTGCTAGATGTTACTTCAAAGGTATACCGTAAACGTCTTTCACAGGCTGTTAGTGGGGGTGATTTGGAAGCAGCAGATAGCAAAGCAGCCTTCCTTCAAGGTATCTGTGAGGAGCTGCACTTCGATCCACAGAAGGCGAGTGGGATTCATGAAGAAATTTACCGGCAGAAGCTTCAGCTGTGTGTTGCTGATGGAGAGCTTGATGAGGAGGATGTTGCTGCCTTGTTAAGGCTGCGGGTCTTGCTATGTATACCAAGGGAAACTGTTGAAGCTGCCCATACAGAGATCTGTGGCAGTTTGTTTGAAAAGGTTGTGAAGGATGCAATTGCATCTGGTGTTGATGGATACGACGCTGATGTGAAATTAGCTGTCAGAAAGGCAGCCCATGGCTTGCGATTGACTAGGGAGGCAGCCATGTCTATTGCAAGCAAGGCAGTGAGTATCCATTTTGATTGCTGTTTTTTTTATTTTGTTATCTTTTATGTTAAGTTTATCTTTGGATTTAACACGTTGCCTTTCTCTTTTGTTATACTGCTATCTATGCAGGTCAGAAGGATTTTTGTTAACTACGTAAAACGAGCACGGGCAGCCGGGAACCGTACTGAGGCTGCAAAAGAACTTAAAAAGCTGATAGCCTTCAACACATTGGTTGTGACTGAATTAGTGGCAGACATAAAAGGGGAATCATCTGATACATCGACAGATGAGCCAACAAAGGAGAAAGAAGTAAAAGAGGAAGAAGAAACAGTCCCAGAGGATGAGGAATGGGAATCTATTCAGACACTTAGAAAAATAAGACCTGACAAGGAACTTGCAGCGAAGTTGGGGAAGCCTGGTCAGACTGAGATAACTCTGAAAGATGACCTGCAAGAAAGAGAGAGGACCGACCTGTACAAAACATACTTGCTTTTTTGTATAACTGGAGAAGTGAAGAAGATTCCATTTGGTGCTCAGATCACTACAAAGAAGGATGATTCAGAGTATCTGCTACTAAATCAGCTTGGAGCAATATTGGGTTTGAGCACTACAGAGGTCGTGGAAGTACACAGGAGCCTGGCCGAGCAAGCTTTCAGGCAACAAGCAGAGGTGATTTTAGCTGATGGGCAATTGACAAAAGCCAGGGTAGAGCAACTTGATGAGTTGCAGAAGCAAGTTGGGTTGCCTCCACAATATGTTCAAAAGATAATAAAGAGTATAACAACTACAAAAATGGCGTCTGCCATTGAAACAGCTATTGGCCAGGGGAGGCTCAATATTAAGCAGATAAGAGAACTTAAACAATCAAGTGTTGATTTAGAAAGCATGATATCTGAGAGCTTGCGAGAGAACCTATTCAAAAAAACTGTTGATGAGATATTCTCATCAGGCACTGGAGAGTTTGATGAGGAGGAAGTCTATGAGAAAATCCCAGCGGATCTCAACATTAATGTCAAGAAGGCAAGAGGTGTAGTTCTGGAGCTTGCAAAGAGCAGATTATCTAATTCACTGATTCAAGCTGTGTCACTTTTGCGGCAGAGAAATGGTCAAGGAGTGGTTTCTTCTCTTAATGACATGCTGGCTTGTGATAAAGCTGTGCCTGCCCAGCCACTTTCATGGGATGTTCCAGAGGAGCTGGCGGATCTGTTTGCCATATACCTTAAAAGTGACCCAGCACCTGAGAAACTGTCACGCTTGCAGTATCTGCTGGGCATTAATGATTCCATGGCAGCTTCCCTCGGGGAGATGGGAGACAGATTATCCCCTGCTGGTGCAGAGGAAAAGTTTGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061927 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tic110

Protein Analysis

1051

Amino Acids

115.64

Weight (kDa)

5.78

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tic110	PF16940	73 - 611	4.6e-268	Chloroplast envelope transporter
Tic110	PF16940	639 - 683	4.7e-15	Chloroplast envelope transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06950
fragaria_vesca	FvH4_3g40080
malus_domestica	MD03G1058800.v1.1 MD11G1060900.v1.1
prunus_persica	Prupe.6G045000_v2.0.a1
pyrus_communis	pycom03g04710 pycom11g05040
rosa_chinensis	RchiOBHm_Chr5g0072271
rosa_laevigata	RLG00000036290
rosa_multiflora	Rmu_sc0000714.1_g000010
rosa_roxburghii	Rroxscaffold_1G00009000
rosa_rugosa	Rorug05G0417400
rosa_samantha	Rh5AG473200 Rh5BG493500 Rh5CG517500 Rh5DG505400
rosa_wichuraiana	Rw5G043970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	2 cut(s)	1918, 2256
AccB1I	GGYRCC	2 cut(s)	117, 167
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	3 cut(s)	703, 1407, 1633
AccII	CGCG	3 cut(s)	90, 104, 350
AclWI	GGATC	3 cut(s)	1502, 2805, 3009
AcoI	YGGCCR	5 cut(s)	420, 457, 1035, 2439, 2620
AcsI	RAATTY	1 cut(s)	1539
AcuI	CTGAAG	3 cut(s)	567, 693, 1541
AcyI	GRCGYC	4 cut(s)	118, 168, 272, 2597
AfaI	GTAC	4 cut(s)	398, 1984, 2276, 2427
AfeI	AGCGCT	1 cut(s)	415
AfiI	CCNNNNNNNGG	6 cut(s)	114, 127, 148, 1199, 1611, 1987
AflII	CTTAAG	1 cut(s)	1340
AflIII	ACRYGT	1 cut(s)	1890
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	7 cut(s)	595, 861, 1192, 2215, 2436, 2501, 2622
AjuI	GAANNNNNNNTTGG	2 cut(s)	2601, 2633
AleI	CACNNNNGTG	1 cut(s)	584
Alw21I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1966, 2335, 2408
Alw26I	GTCTC	4 cut(s)	136, 722, 793, 3105
AlwI	GGATC	3 cut(s)	1502, 2805, 3009
AlwNI	CAGNNNCTG	5 cut(s)	778, 1178, 2753, 3038, 3064
Ama87I	CYCGRG	1 cut(s)	3098
Aor51HI	AGCGCT	1 cut(s)	415
AoxI	GGCC	6 cut(s)	420, 457, 1035, 1202, 2439, 2620
ApoI	RAATTY	1 cut(s)	1539
ArsI	GACNNNNNNTTYG	2 cut(s)	2582, 2614
AseI	ATTAAT	2 cut(s)	2808, 3075
Asp700I	GAANNNNTTC	2 cut(s)	2157, 2714
AspLEI	GCGC	4 cut(s)	92, 120, 170, 416
AspS9I	GGNCC	3 cut(s)	736, 1202, 2265
AsuC2I	CCSGG	2 cut(s)	461, 1975
AsuHPI	GGTGA	8 cut(s)	168, 280, 758, 844, 1235, 1247, 1454, 2482
AvaI	CYCGRG	1 cut(s)	3098
AvaII	GGWCC	2 cut(s)	736, 2265
BaeI	ACNNNNGTAYC	4 cut(s)	621, 654, 962, 995
BalI	TGGCCA	1 cut(s)	2622
BanI	GGYRCC	2 cut(s)	117, 167
BanII	GRGCYC	2 cut(s)	219, 555
BauI	CACGAG	1 cut(s)	1104
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1966, 2335, 2408
BccI	CCATC	4 cut(s)	1568, 1718, 2477, 3100
BceAI	ACGGC	5 cut(s)	105, 131, 181, 407, 416
BciT130I	CCWGG	7 cut(s)	597, 863, 1194, 2217, 2438, 2503, 2624
BciVI	GTATCC	2 cut(s)	1721, 1835
BcnI	CCSGG	2 cut(s)	461, 1975
BcoDI	GTCTC	4 cut(s)	136, 722, 793, 3105
BfaI	CTAG	4 cut(s)	752, 1133, 1388, 1785
BfmI	CTRYAG	2 cut(s)	1002, 2409
BfoI	RGCGCY	3 cut(s)	121, 171, 417
BfrI	CTTAAG	1 cut(s)	1340
BfuAI	ACCTGC	2 cut(s)	1918, 2256
BfuI	GTATCC	2 cut(s)	1721, 1835
BglII	AGATCT	1 cut(s)	1668
Bme1390I	CCNGG	9 cut(s)	461, 597, 863, 1194, 1975, 2217, 2438, 2503, 2624
Bme18I	GGWCC	2 cut(s)	736, 2265
BmeT110I	CYCGRG	1 cut(s)	3098
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	736, 1202, 2265
BmiI	GGNNCC	6 cut(s)	119, 169, 388, 737, 1979, 2435
BmrFI	CCNGG	9 cut(s)	461, 597, 863, 1194, 1975, 2217, 2438, 2503, 2624
BmrI	ACTGGG	2 cut(s)	151, 741
BmsI	GCATC	6 cut(s)	669, 799, 928, 1165, 1693, 1721
BmuI	ACTGGG	2 cut(s)	151, 741
BoxI	GACNNNNGTC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	341
BplI	GAGNNNNNCTC	2 cut(s)	2726, 2758
BpmI	CTGGAG	6 cut(s)	41, 243, 579, 2325, 2775, 2858
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	746, 1055
BpuMI	CCSGG	2 cut(s)	461, 1975
Bsa29I	ATCGAT	1 cut(s)	663
BsaAI	YACGTR	1 cut(s)	1954
BsaBI	GATNNNNATC	1 cut(s)	875
BsaHI	GRCGYC	4 cut(s)	118, 168, 272, 2597
BsaI	GGTCTC	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 127, 148, 1199, 1611, 1987
Bse118I	RCCGGY	3 cut(s)	455, 570, 1545
Bse1I	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2308, 2758
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	875
BseBI	CCWGG	7 cut(s)	597, 863, 1194, 2217, 2438, 2503, 2624
BseCI	ATCGAT	1 cut(s)	663
BseGI	GGATG	7 cut(s)	469, 625, 1600, 1708, 2146, 2359, 2986
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	6 cut(s)	114, 127, 148, 1199, 1611, 1987
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	5 cut(s)	1977, 2217, 2348, 2685, 3030
BseNI	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2308, 2758
BseRI	GAGGAG	5 cut(s)	8, 1508, 1604, 2783, 3005
BseX3I	CGGCCG	2 cut(s)	420, 457
BseYI	CCCAGC	4 cut(s)	2791, 2964, 3031, 3067
BsgI	GTGCAG	2 cut(s)	1484, 3153
Bsh1236I	CGCG	3 cut(s)	90, 104, 350
Bsh1285I	CGRYCG	3 cut(s)	108, 423, 460
BshFI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2441, 2622
BshNI	GGYRCC	2 cut(s)	117, 167
BshVI	ATCGAT	1 cut(s)	663
BsiEI	CGRYCG	3 cut(s)	108, 423, 460
BsiHKAI	GWGCWC	7 cut(s)	219, 372, 555, 1023, 1966, 2335, 2408
BsiHKCI	CYCGRG	1 cut(s)	3098
BsiSI	CCGG	7 cut(s)	291, 419, 456, 460, 571, 1546, 1974
BslFI	GGGAC	3 cut(s)	95, 749, 2117
BslI	CCNNNNNNNGG	6 cut(s)	114, 127, 148, 1199, 1611, 1987
BsmAI	GTCTC	4 cut(s)	136, 722, 793, 3105
BsmFI	GGGAC	3 cut(s)	95, 749, 2117
BsmI	GAATGC	2 cut(s)	539, 1003
BsnI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2441, 2622
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	3098
Bsp1286I	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1966, 2335, 2408
Bsp1407I	TGTACA	1 cut(s)	2274
Bsp143I	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
Bsp19I	CCATGG	2 cut(s)	1768, 3084
BspANI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2441, 2622
BspCNI	CTCAG	5 cut(s)	1978, 2218, 2347, 2686, 3031
BspDI	ATCGAT	1 cut(s)	663
BspFNI	CGCG	3 cut(s)	90, 104, 350
BspHI	TCATGA	1 cut(s)	1531
BspLI	GGNNCC	6 cut(s)	119, 169, 388, 737, 1979, 2435
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	2 cut(s)	1918, 2256
BspPI	GGATC	3 cut(s)	1502, 2805, 3009
BspQI	GCTCTTC	1 cut(s)	1110
BspT107I	GGYRCC	2 cut(s)	117, 167
BspTI	CTTAAG	1 cut(s)	1340
BspTNI	GGTCTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	3 cut(s)	455, 570, 1545
BsrGI	TGTACA	1 cut(s)	2274
BsrI	ACTGG	7 cut(s)	58, 157, 226, 736, 1038, 2308, 2758
BssAI	RCCGGY	3 cut(s)	455, 570, 1545
BssMI	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
BssNAI	GTATAC	2 cut(s)	1408, 1634
BssNI	GRCGYC	4 cut(s)	118, 168, 272, 2597
BssSI	CACGAG	1 cut(s)	1104
BssT1I	CCWWGG	4 cut(s)	830, 1637, 1768, 3084
Bst1107I	GTATAC	2 cut(s)	1408, 1634
Bst2BI	CACGAG	1 cut(s)	1104
Bst2UI	CCWGG	7 cut(s)	597, 863, 1194, 2217, 2438, 2503, 2624
Bst4CI	ACNGT	9 cut(s)	109, 193, 740, 1412, 1648, 1982, 2131, 2728, 3048
Bst6I	CTCTTC	2 cut(s)	1110, 1305
BstACI	GRCGYC	4 cut(s)	118, 168, 272, 2597
BstAFI	CTTAAG	1 cut(s)	1340
BstAPI	GCANNNNNTGC	2 cut(s)	545, 3064
BstAUI	TGTACA	1 cut(s)	2274
BstBAI	YACGTR	1 cut(s)	1954
BstDEI	CTNAG	8 cut(s)	260, 959, 1986, 2168, 2226, 2334, 2694, 3039
BstDSI	CCRYGG	3 cut(s)	113, 1768, 3084
BstEII	GGTNACC	1 cut(s)	850
BstENI	CCTNNNNNAGG	1 cut(s)	1609
BstF5I	GGATG	7 cut(s)	469, 625, 1600, 1708, 2146, 2359, 2986
BstFNI	CGCG	3 cut(s)	90, 104, 350
BstH2I	RGCGCY	3 cut(s)	121, 171, 417
BstHHI	GCGC	4 cut(s)	92, 120, 170, 416
BstKTI	GATC	6 cut(s)	751, 1510, 1671, 2340, 2800, 3004
BstMAI	GTCTC	4 cut(s)	136, 722, 793, 3105
BstMBI	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
BstMCI	CGRYCG	3 cut(s)	108, 423, 460
BstNI	CCWGG	7 cut(s)	597, 863, 1194, 2217, 2438, 2503, 2624
BstNSI	RCATGY	1 cut(s)	2938
BstPAI	GACNNNNGTC	1 cut(s)	194
BstPI	GGTNACC	1 cut(s)	850
BstSCI	CCNGG	9 cut(s)	459, 595, 861, 1192, 1973, 2215, 2436, 2501, 2622
BstSFI	CTRYAG	2 cut(s)	1002, 2409
BstSNI	TACGTA	1 cut(s)	1954
BstUI	CGCG	3 cut(s)	90, 104, 350
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	3 cut(s)	1668, 2797, 3001
BstXI	CCANNNNNNTGG	1 cut(s)	2976
BstYI	RGATCY	3 cut(s)	1668, 2797, 3001
BstZ17I	GTATAC	2 cut(s)	1408, 1634
BstZI	CGGCCG	2 cut(s)	420, 457
Bsu15I	ATCGAT	1 cut(s)	663
BsuI	GTATCC	2 cut(s)	1721, 1835
BsuRI	GGCC	6 cut(s)	422, 459, 1037, 1204, 2441, 2622
BsuTUI	ATCGAT	1 cut(s)	663
BtgI	CCRYGG	3 cut(s)	113, 1768, 3084
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	7 cut(s)	469, 625, 1600, 1708, 2146, 2359, 2986
BtsI	GCAGTG	1 cut(s)	1824
BtsIMutI	CAGTG	5 cut(s)	219, 591, 1824, 2751, 2867
BveI	ACCTGC	2 cut(s)	1918, 2256
CaiI	CAGNNNCTG	5 cut(s)	778, 1178, 2753, 3038, 3064
CciI	TCATGA	1 cut(s)	1531
CfoI	GCGC	4 cut(s)	92, 120, 170, 416
Cfr10I	RCCGGY	3 cut(s)	455, 570, 1545
Cfr13I	GGNCC	3 cut(s)	736, 1202, 2265
ClaI	ATCGAT	1 cut(s)	663
CseI	GACGC	4 cut(s)	714, 749, 1742, 2586
Csp6I	GTAC	4 cut(s)	397, 1983, 2275, 2426
CviAII	CATG	9 cut(s)	691, 976, 1532, 1769, 1798, 2686, 2935, 2976, 3085
CviQI	GTAC	4 cut(s)	397, 1983, 2275, 2426
DdeI	CTNAG	8 cut(s)	260, 959, 1986, 2168, 2226, 2334, 2694, 3039
DinI	GGCGCC	2 cut(s)	119, 169
DpnI	GATC	6 cut(s)	750, 1509, 1670, 2339, 2799, 3003
DpnII	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	5 cut(s)	420, 457, 1035, 2439, 2620
EagI	CGGCCG	2 cut(s)	420, 457
Eam1104I	CTCTTC	2 cut(s)	1110, 1305
EarI	CTCTTC	2 cut(s)	1110, 1305
EciI	GGCGGA	1 cut(s)	3014
Ecl136II	GAGCTC	2 cut(s)	217, 553
EclXI	CGGCCG	2 cut(s)	420, 457
Eco105I	TACGTA	1 cut(s)	1954
Eco130I	CCWWGG	4 cut(s)	830, 1637, 1768, 3084
Eco24I	GRGCYC	2 cut(s)	219, 555
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	2691
Eco47I	GGWCC	2 cut(s)	736, 2265
Eco47III	AGCGCT	1 cut(s)	415
Eco52I	CGGCCG	2 cut(s)	420, 457
Eco53kI	GAGCTC	2 cut(s)	217, 553
Eco57I	CTGAAG	3 cut(s)	567, 693, 1541
Eco88I	CYCGRG	1 cut(s)	3098
Eco91I	GGTNACC	1 cut(s)	850
EcoICRI	GAGCTC	2 cut(s)	217, 553
EcoNI	CCTNNNNNAGG	1 cut(s)	1609
EcoO65I	GGTNACC	1 cut(s)	850
EcoRII	CCWGG	7 cut(s)	595, 861, 1192, 2215, 2436, 2501, 2622
EcoRV	GATATC	1 cut(s)	2691
EcoT14I	CCWWGG	4 cut(s)	830, 1637, 1768, 3084
EcoT38I	GRGCYC	2 cut(s)	219, 555
EgeI	GGCGCC	2 cut(s)	119, 169
EheI	GGCGCC	2 cut(s)	119, 169
ErhI	CCWWGG	4 cut(s)	830, 1637, 1768, 3084
FaeI	CATG	9 cut(s)	694, 979, 1535, 1772, 1801, 2689, 2938, 2979, 3088
FalI	AAGNNNNNCTT	2 cut(s)	1862, 1894
FaqI	GGGAC	3 cut(s)	95, 749, 2117
FatI	CATG	9 cut(s)	690, 975, 1531, 1768, 1797, 2685, 2934, 2975, 3084
FauI	CCCGC	4 cut(s)	149, 298, 1084, 1611
FauNDI	CATATG	1 cut(s)	1276
FblI	GTMKAC	3 cut(s)	703, 1407, 1633
FokI	GGATG	7 cut(s)	476, 632, 1607, 1715, 2153, 2366, 2993
FriOI	GRGCYC	2 cut(s)	219, 555
FspBI	CTAG	4 cut(s)	752, 1133, 1388, 1785
GlaI	GCGC	4 cut(s)	91, 119, 169, 415
GsaI	CCCAGC	4 cut(s)	2795, 2968, 3035, 3071
GsuI	CTGGAG	6 cut(s)	41, 243, 579, 2325, 2775, 2858
HaeII	RGCGCY	3 cut(s)	121, 171, 417
HaeIII	GGCC	6 cut(s)	422, 459, 1037, 1204, 2441, 2622
HapII	CCGG	7 cut(s)	291, 419, 456, 460, 571, 1546, 1974
HgaI	GACGC	4 cut(s)	714, 749, 1742, 2586
HhaI	GCGC	4 cut(s)	92, 120, 170, 416
Hin1I	GRCGYC	4 cut(s)	118, 168, 272, 2597
Hin1II	CATG	9 cut(s)	694, 979, 1535, 1772, 1801, 2689, 2938, 2979, 3088
Hin6I	GCGC	4 cut(s)	90, 118, 168, 414
HinP1I	GCGC	4 cut(s)	90, 118, 168, 414
HincII	GTYRAC	1 cut(s)	1948
HindII	GTYRAC	1 cut(s)	1948
HindIII	AAGCTT	4 cut(s)	245, 1319, 1553, 2448
HpaI	GTTAAC	1 cut(s)	1948
HpaII	CCGG	7 cut(s)	291, 419, 456, 460, 571, 1546, 1974
HphI	GGTGA	8 cut(s)	168, 280, 758, 844, 1235, 1247, 1454, 2482
Hpy166II	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1948, 2428
Hpy188III	TCNNGA	7 cut(s)	331, 752, 1077, 1532, 2815, 2837, 2987
Hpy8I	GTNNAC	8 cut(s)	397, 640, 704, 1408, 1415, 1634, 1948, 2428
Hpy99I	CGWCG	5 cut(s)	277, 428, 437, 765, 1736
HpyCH4III	ACNGT	9 cut(s)	109, 193, 740, 1412, 1648, 1982, 2131, 2728, 3048
HpyCH4IV	ACGT	6 cut(s)	173, 272, 450, 1417, 1892, 1953
HpyF3I	CTNAG	8 cut(s)	260, 959, 1986, 2168, 2226, 2334, 2694, 3039
HpySE526I	ACGT	6 cut(s)	173, 272, 450, 1417, 1892, 1953
Hsp92I	GRCGYC	4 cut(s)	118, 168, 272, 2597
Hsp92II	CATG	9 cut(s)	694, 979, 1535, 1772, 1801, 2689, 2938, 2979, 3088
HspAI	GCGC	4 cut(s)	90, 118, 168, 414
KasI	GGCGCC	2 cut(s)	117, 167
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	1948
Kzo9I	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
LguI	GCTCTTC	1 cut(s)	1110
LweI	GCATC	6 cut(s)	669, 799, 928, 1165, 1693, 1721
MaeI	CTAG	4 cut(s)	752, 1133, 1388, 1785
MaeII	ACGT	6 cut(s)	173, 272, 450, 1417, 1892, 1953
MalI	GATC	6 cut(s)	750, 1509, 1670, 2339, 2799, 3003
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
MfeI	CAATTG	3 cut(s)	279, 1707, 2489
MflI	RGATCY	3 cut(s)	1668, 2797, 3001
MhlI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1966, 2335, 2408
MlsI	TGGCCA	1 cut(s)	2622
MluCI	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 2042, 2489, 2863
MluNI	TGGCCA	1 cut(s)	2622
Mly113I	GGCGCC	2 cut(s)	118, 168
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	2622
MroNI	GCCGGC	1 cut(s)	455
MroXI	GAANNNNTTC	2 cut(s)	2157, 2714
MscI	TGGCCA	1 cut(s)	2622
MslI	CAYNNNNRTG	2 cut(s)	584, 2974
Msp20I	TGGCCA	1 cut(s)	2622
MspA1I	CMGCKG	5 cut(s)	392, 923, 1091, 1561, 2795
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	7 cut(s)	291, 419, 456, 460, 571, 1546, 1974
MspR9I	CCNGG	9 cut(s)	461, 597, 863, 1194, 1975, 2217, 2438, 2503, 2624
MunI	CAATTG	3 cut(s)	279, 1707, 2489
Mva1269I	GAATGC	2 cut(s)	539, 1003
MvaI	CCWGG	7 cut(s)	597, 863, 1194, 2217, 2438, 2503, 2624
MvnI	CGCG	3 cut(s)	90, 104, 350
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	2 cut(s)	118, 168
NciI	CCSGG	2 cut(s)	461, 1975
NcoI	CCATGG	2 cut(s)	1768, 3084
NdeI	CATATG	1 cut(s)	1276
NdeII	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	9 cut(s)	694, 979, 1535, 1772, 1801, 2689, 2938, 2979, 3088
NlaIV	GGNNCC	6 cut(s)	119, 169, 388, 737, 1979, 2435
NmeAIII	GCCGAG	3 cut(s)	128, 1063, 2467
NspI	RCATGY	1 cut(s)	2938
OliI	CACNNNNGTG	1 cut(s)	584
PagI	TCATGA	1 cut(s)	1531
PciSI	GCTCTTC	1 cut(s)	1110
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	2 cut(s)	539, 1003
PdiI	GCCGGC	1 cut(s)	457
PdmI	GAANNNNTTC	2 cut(s)	2157, 2714
PfoI	TCCNGGA	1 cut(s)	595
PleI	GAGTC	1 cut(s)	233
PluTI	GGCGCC	2 cut(s)	121, 171
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	1954
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	2 cut(s)	2808, 3075
PsiI	TTATAA	1 cut(s)	1269
Psp124BI	GAGCTC	2 cut(s)	219, 555
Psp6I	CCWGG	7 cut(s)	595, 861, 1192, 2215, 2436, 2501, 2622
PspEI	GGTNACC	1 cut(s)	850
PspFI	CCCAGC	4 cut(s)	2791, 2964, 3031, 3067
PspGI	CCWGG	7 cut(s)	595, 861, 1192, 2215, 2436, 2501, 2622
PspN4I	GGNNCC	6 cut(s)	119, 169, 388, 737, 1979, 2435
PspPI	GGNCC	3 cut(s)	736, 1202, 2265
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	5 cut(s)	778, 1178, 2753, 3038, 3064
PsuI	RGATCY	3 cut(s)	1668, 2797, 3001
PvuII	CAGCTG	2 cut(s)	923, 1561
RsaI	GTAC	4 cut(s)	398, 1984, 2276, 2427
RsaNI	GTAC	4 cut(s)	397, 1983, 2275, 2426
RseI	CAYNNNNRTG	2 cut(s)	584, 2974
SacI	GAGCTC	2 cut(s)	219, 555
SapI	GCTCTTC	1 cut(s)	1110
Sau3AI	GATC	6 cut(s)	748, 1507, 1668, 2337, 2797, 3001
Sau96I	GGNCC	3 cut(s)	736, 1202, 2265
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	9 cut(s)	461, 597, 863, 1194, 1975, 2217, 2438, 2503, 2624
SduI	GDGCHC	7 cut(s)	219, 372, 555, 1023, 1966, 2335, 2408
SfaNI	GCATC	6 cut(s)	669, 799, 928, 1165, 1693, 1721
SfcI	CTRYAG	2 cut(s)	1002, 2409
SfoI	GGCGCC	2 cut(s)	119, 169
SinI	GGWCC	2 cut(s)	736, 2265
SmiMI	CAYNNNNRTG	2 cut(s)	584, 2974
SmlI	CTYRAG	3 cut(s)	725, 1070, 1340
SmoI	CTYRAG	3 cut(s)	725, 1070, 1340
SnaBI	TACGTA	1 cut(s)	1954
Sse9I	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 2042, 2489, 2863
SspDI	GGCGCC	2 cut(s)	117, 167
SspI	AATATT	3 cut(s)	1048, 2394, 2638
SspMI	CTAG	4 cut(s)	752, 1133, 1388, 1785
SstI	GAGCTC	2 cut(s)	219, 555
StyD4I	CCNGG	9 cut(s)	459, 595, 861, 1192, 1973, 2215, 2436, 2501, 2622
StyI	CCWWGG	4 cut(s)	830, 1637, 1768, 3084
TaaI	ACNGT	9 cut(s)	109, 193, 740, 1412, 1648, 1982, 2131, 2728, 3048
TaiI	ACGT	6 cut(s)	176, 275, 453, 1420, 1895, 1956
TaqI	TCGA	5 cut(s)	435, 627, 663, 1506, 2081
TaqII	GACCGA	1 cut(s)	2282
TasI	AATT	9 cut(s)	51, 279, 1206, 1539, 1707, 1745, 2042, 2489, 2863
TatI	WGTACW	2 cut(s)	2274, 2425
TauI	GCSGC	6 cut(s)	43, 256, 259, 392, 431, 2896
TscAI	CASTG	5 cut(s)	226, 591, 1824, 2758, 2874
TspDTI	ATGAA	7 cut(s)	17, 636, 804, 1041, 1520, 1548, 2964
TspGWI	ACGGA	2 cut(s)	869, 1298
TspRI	CASTG	5 cut(s)	226, 591, 1824, 2758, 2874
Vha464I	CTTAAG	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	736, 2265
VspI	ATTAAT	2 cut(s)	2808, 3075
XagI	CCTNNNNNAGG	1 cut(s)	1609
XapI	RAATTY	1 cut(s)	1539
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	2938
XmiI	GTMKAC	3 cut(s)	703, 1407, 1633
XmnI	GAANNNNTTC	2 cut(s)	2157, 2714
XspI	CTAG	4 cut(s)	752, 1133, 1388, 1785
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.