Rmu_sc0000717.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000717.1
OG0009999
Physical Location & Seq
Reverse (-)
12225 .. 17304
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2400 bp
atgatttgtttaaggctaaccactttggcccggcagcggctacgacgaagtaacaatggacacaattcatcaattaatctctacgattatccaagcctctctagagaaacccctctccttctcttacctgtgaccacaggagccgactgtcagtgccaccaaaccctctgtcaacgtgcttcggtcctagtctcctcgggagccgactgtagtatcgcgaccacaactgttactgaatcagccaagcaaggaagcttagcaaaagtcctcaccacgaggcacaaagaattcctcaatgaggttggtgctctcctcgtccacaatcgctcaaaagaagtcaggtcatgggacaaccccgacgaccgcacccaaacggaatgtgtaatagcgtttgagccaactcgcaaagtcgtttctgctttggtgttatatagcaagcggatgaatgccagtgtctctcactatctacaccaactaaagctctgcgcaagaagccagacatcttccacagccaaaaaactccacgcccaaatcatcaaagcagctctacatctctgcccgcccttacccaacaccctcttaggcgtctacggcaaatgcggtctcgtcggagacgcactccacctgttcgacgaaatgcctcacagagaccacgtctcatgggcttcacttctcaccgcacacaaccaagccagcctcccccaccggactctctccatgttccgcattatgtatgagtcggactctttgctgccggaccattttgtttttgctagtgttgtcaaggcttgctctagcttgggagctattaggcaaggcaagcaagttcatgcacgctttatgttatcgcagttttgcgaggatgatgttgtcaagtcttctctggttgatatgtatgcgaaatgtggattgcctgataatgctcgtgcggtttttgattcgatttcaaagaggagtgtggtttcttggactgctttgatttccgggtatgctaggagcggaaggaaattggatgctttggaaatgtttgagaagctaccggttaagagtttgttttcgtggactgctttgatatctggattggtgcaaagtggaaatggtgttgatgcactgtacttgtttattgaaatgagaagagaaagggttgatatagtggatccattggttctttcgagcactgttggagcttgtgctaatttggcagtcttggagcttggaaagcaggttcatggcctggttattggtcttgggtatgggtcgtgcttgtttattagtaatgcactggtggatatgtatgcaaaatgtagtgacattttagctgcgaaggatattttcggtggaatgcaacgaaaagatgtagtttcttggacttccataattgttggggcggctcagcatgggcgagctgaggaagcattgactttatatgatggcatggttggagctggaattaagcctaatgaagttacatttgttggactgatttatgcttgtagtcatgttggtttcgttagcaaaggacgtgccattttcagatctatgattgaagattatggaattcgtccctgtctgcagcactatacatgtttcttggatcttcttagtcgctctgggcatcttagtgaagctttgaatgttattaattcaatgccgttggagcctgatgaacccacttgggcagctttactaagtgcttgcaagcagcatggagatacccaaatgggtatcagggttgctgatcatcttttaagcttaaacccagaagatccttcaagttatatactgttatctaatgtctacgctggtgctggtatgtgggaaaatgtagcaaaagtgagaaagttgatgacagcgagagaagttaagaagaatccaggttacagttccatcgacattggaaaggaaagccaagtgttttatgctggagagacatctcatcctttgaaggatgagatattcgatttgcttaaagagttggatgcagagatgaggaaaagaggttatgttcccgacagtagctttgttttacatgacatggagcagcaagagaaagaaaagcagctgttttggcatagtgaaaggctggcattggcttatgggcttctgaaggctgttccagggacacctatccggatagtgaaaaatcttcgtgtttgcggagattgtcacacggacacagctgaaagacaatatgaaggcccagactgtgatactcatctatctgtagtaactgtgagactgaatctggtgatagcagcagatcatgacagtcctgcccaaactaatgcatctgtatggagaaggcaagaagctgaagagcatacctcaccggtcaccagtttcatgtgtaagctgaatagataccttgctctctcctgtatgcttgtgtctgaggcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

799

Amino Acids

88.24

Weight (kDa)

7.55

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 352 - 381 9.8e-06 PPR repeat
PPR_2 PF13041 451 - 499 3.9e-10 PPR repeat family
PPR_long PF17177 468 - 574 1.2e-08 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 570 - 630 2.3e-17 E motif
DYW_deaminase PF14432 667 - 725 6.6e-22 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 1213
AccBSI CCGCTC 1 cut(s) 999
AccI GTMKAC 2 cut(s) 588, 1797
AccII CGCG 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 2130
AclWI GGATC 4 cut(s) 1151, 1164, 1602, 1760
AcsI RAATTY 2 cut(s) 287, 1557
AcuI CTGAAG 2 cut(s) 2126, 2334
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 1 cut(s) 1115
AfiI CCNNNNNNNGG 2 cut(s) 36, 298
AflIII ACRYGT 1 cut(s) 1583
AgeI ACCGGT 2 cut(s) 1039, 2329
AgsI TTSAA 7 cut(s) 948, 1127, 1547, 1633, 1647, 1773, 1945
AjiI CACGTC 2 cut(s) 655, 1523
AjnI CCWGG 3 cut(s) 1233, 1873, 2116
AloI GAACNNNNNNTCC 2 cut(s) 1209, 1241
Alw21I GWGCWC 2 cut(s) 310, 1178
Alw26I GTCTC 8 cut(s) 196, 460, 606, 608, 642, 661, 1922, 2230
AlwI GGATC 4 cut(s) 1151, 1164, 1602, 1760
Ama87I CYCGRG 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 2130
AoxI GGCC 3 cut(s) 27, 1231, 2197
ApoI RAATTY 2 cut(s) 287, 1557
ArsI GACNNNNNNTTYG 4 cut(s) 154, 186, 2003, 2035
AseI ATTAAT 2 cut(s) 75, 1641
AsiGI ACCGGT 2 cut(s) 1039, 2329
AspLEI GCGC 1 cut(s) 488
AspS9I GGNCC 4 cut(s) 28, 184, 757, 2198
AsuC2I CCSGG 2 cut(s) 31, 985
AsuHPI GGTGA 5 cut(s) 262, 667, 2260, 2319, 2326
AvaI CYCGRG 1 cut(s) 196
AvaII GGWCC 2 cut(s) 184, 757
BaeI ACNNNNGTAYC 2 cut(s) 196, 229
BamHI GGATCC 1 cut(s) 1156
BauI CACGAG 2 cut(s) 274, 924
BbsI GAAGAC 1 cut(s) 870
Bbv12I GWGCWC 2 cut(s) 310, 1178
BbvCI CCTCAGC 1 cut(s) 1407
BccI CCATC 2 cut(s) 1424, 1895
BceAI ACGGC 2 cut(s) 607, 1636
BciT130I CCWGG 3 cut(s) 1235, 1875, 2118
BclI TGATCA 1 cut(s) 1738
BcnI CCSGG 2 cut(s) 31, 985
BcoDI GTCTC 8 cut(s) 196, 460, 606, 608, 642, 661, 1922, 2230
BfaI CTAG 5 cut(s) 102, 188, 774, 795, 993
BfmI CTRYAG 3 cut(s) 208, 1571, 2223
BfuAI ACCTGC 1 cut(s) 1213
BglII AGATCT 1 cut(s) 1535
BlpI GCTNAGC 2 cut(s) 256, 1392
Bme1390I CCNGG 5 cut(s) 31, 985, 1235, 1875, 2118
Bme18I GGWCC 2 cut(s) 184, 757
BmeT110I CYCGRG 1 cut(s) 196
BmgBI CACGTC 2 cut(s) 655, 1523
BmgT120I GGNCC 4 cut(s) 28, 184, 757, 2198
BmiI GGNNCC 4 cut(s) 142, 202, 1158, 1659
BmrFI CCNGG 5 cut(s) 31, 985, 1235, 1875, 2118
BmsI GCATC 5 cut(s) 1003, 1096, 1624, 1969, 2297
BpiI GAAGAC 1 cut(s) 870
BplI GAGNNNNNCTC 6 cut(s) 603, 635, 728, 760, 2309, 2341
BpmI CTGGAG 1 cut(s) 1944
Bpu10I CCTNAGC 1 cut(s) 1407
Bpu1102I GCTNAGC 2 cut(s) 256, 1392
BpuMI CCSGG 2 cut(s) 31, 985
BsaBI GATNNNNATC 1 cut(s) 2214
BsaHI GRCGYC 1 cut(s) 585
BsaI GGTCTC 2 cut(s) 608, 642
BsaJI CCNNGG 2 cut(s) 195, 2117
BsaWI WCCGGW 4 cut(s) 705, 1039, 2130, 2329
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 298
Bse118I RCCGGY 2 cut(s) 1039, 2329
Bse1I ACTGG 3 cut(s) 450, 1287, 2337
Bse8I GATNNNNATC 1 cut(s) 2214
BseAI TCCGGA 1 cut(s) 2130
BseBI CCWGG 3 cut(s) 1235, 1875, 2118
BseDI CCNNGG 2 cut(s) 195, 2117
BseGI GGATG 6 cut(s) 447, 868, 1018, 1936, 1954, 1984
BseJI GATNNNNATC 1 cut(s) 2214
BseLI CCNNNNNNNGG 2 cut(s) 36, 298
BseMII CTCAG 3 cut(s) 1398, 1406, 2382
BseNI ACTGG 3 cut(s) 450, 1287, 2337
BseRI GAGGAG 3 cut(s) 184, 302, 967
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 29, 1233, 2199
BshTI ACCGGT 2 cut(s) 1039, 2329
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 310, 1178
BsiHKCI CYCGRG 1 cut(s) 196
BsiSI CCGG 7 cut(s) 31, 706, 755, 984, 1040, 2131, 2330
BslFI GGGAC 3 cut(s) 362, 1548, 2134
BslI CCNNNNNNNGG 2 cut(s) 36, 298
BsmAI GTCTC 8 cut(s) 196, 460, 606, 608, 642, 661, 1922, 2230
BsmBI CGTCTC 2 cut(s) 606, 661
BsmFI GGGAC 3 cut(s) 362, 1548, 2134
BsmI GAATGC 2 cut(s) 451, 1347
BsnI GGCC 3 cut(s) 29, 1233, 2199
Bso31I GGTCTC 2 cut(s) 608, 642
BsoBI CYCGRG 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 310, 1178
Bsp13I TCCGGA 1 cut(s) 2130
Bsp143I GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
Bsp1720I GCTNAGC 2 cut(s) 256, 1392
Bsp68I TCGCGA 1 cut(s) 218
BspANI GGCC 3 cut(s) 29, 1233, 2199
BspCNI CTCAG 3 cut(s) 1399, 1405, 2383
BspEI TCCGGA 1 cut(s) 2130
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 2263
BspLI GGNNCC 4 cut(s) 142, 202, 1158, 1659
BspMAI CTGCAG 1 cut(s) 1575
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 4 cut(s) 1151, 1164, 1602, 1760
BspQI GCTCTTC 1 cut(s) 2310
BspTNI GGTCTC 2 cut(s) 608, 642
BsrBI CCGCTC 1 cut(s) 999
BsrFI RCCGGY 2 cut(s) 1039, 2329
BsrI ACTGG 3 cut(s) 450, 1287, 2337
BssAI RCCGGY 2 cut(s) 1039, 2329
BssECI CCNNGG 2 cut(s) 195, 2117
BssMI GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
BssNI GRCGYC 1 cut(s) 585
BssSI CACGAG 2 cut(s) 274, 924
Bst2BI CACGAG 2 cut(s) 274, 924
Bst2UI CCWGG 3 cut(s) 1235, 1875, 2118
Bst6I CTCTTC 2 cut(s) 1129, 2310
BstACI GRCGYC 1 cut(s) 585
BstDEI CTNAG 8 cut(s) 256, 580, 1392, 1407, 1601, 1619, 1688, 2391
BstEII GGTNACC 1 cut(s) 2332
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 6 cut(s) 447, 868, 1018, 1936, 1954, 1984
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 488
BstKTI GATC 6 cut(s) 1159, 1538, 1597, 1741, 1768, 2263
BstMAI GTCTC 8 cut(s) 196, 460, 606, 608, 642, 661, 1922, 2230
BstMBI GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 8 cut(s) 492, 591, 820, 1199, 1219, 1412, 1657, 2068
BstNI CCWGG 3 cut(s) 1235, 1875, 2118
BstNSI RCATGY 1 cut(s) 1587
BstPI GGTNACC 1 cut(s) 2332
BstSCI CCNGG 5 cut(s) 29, 983, 1233, 1873, 2116
BstSFI CTRYAG 3 cut(s) 208, 1571, 2223
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 870
BstX2I RGATCY 4 cut(s) 1156, 1535, 1594, 1765
BstYI RGATCY 4 cut(s) 1156, 1535, 1594, 1765
BsuRI GGCC 3 cut(s) 29, 1233, 2199
BtrI CACGTC 2 cut(s) 655, 1523
BtsCI GGATG 6 cut(s) 447, 868, 1018, 1936, 1954, 1984
BtsIMutI CAGTG 5 cut(s) 158, 457, 1109, 1176, 1280
BtuMI TCGCGA 1 cut(s) 218
BveI ACCTGC 1 cut(s) 1213
CciI TCATGA 1 cut(s) 2263
CfoI GCGC 1 cut(s) 488
Cfr10I RCCGGY 2 cut(s) 1039, 2329
Cfr13I GGNCC 4 cut(s) 28, 184, 757, 2198
CseI GACGC 2 cut(s) 574, 623
Csp6I GTAC 1 cut(s) 1114
CspAI ACCGGT 2 cut(s) 1039, 2329
CviQI GTAC 1 cut(s) 1114
DdeI CTNAG 8 cut(s) 256, 580, 1392, 1407, 1601, 1619, 1688, 2391
DpnI GATC 6 cut(s) 1158, 1537, 1596, 1740, 1767, 2262
DpnII GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
Eam1104I CTCTTC 2 cut(s) 1129, 2310
EarI CTCTTC 2 cut(s) 1129, 2310
Eco31I GGTCTC 2 cut(s) 608, 642
Eco32I GATATC 1 cut(s) 1074
Eco47I GGWCC 2 cut(s) 184, 757
Eco57I CTGAAG 2 cut(s) 2126, 2334
Eco88I CYCGRG 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 2332
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 2332
EcoRI GAATTC 2 cut(s) 287, 1557
EcoRII CCWGG 3 cut(s) 1233, 1873, 2116
EcoRV GATATC 1 cut(s) 1074
EcoT22I ATGCAT 1 cut(s) 2290
Esp3I CGTCTC 2 cut(s) 606, 661
FaqI GGGAC 3 cut(s) 362, 1548, 2134
FauI CCCGC 1 cut(s) 567
FbaI TGATCA 1 cut(s) 1738
FblI GTMKAC 2 cut(s) 588, 1797
FokI GGATG 6 cut(s) 454, 875, 1025, 1923, 1961, 1991
FspBI CTAG 5 cut(s) 102, 188, 774, 795, 993
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 1944
HaeIII GGCC 3 cut(s) 29, 1233, 2199
HapII CCGG 7 cut(s) 31, 706, 755, 984, 1040, 2131, 2330
HgaI GACGC 2 cut(s) 574, 623
HhaI GCGC 1 cut(s) 488
Hin1I GRCGYC 1 cut(s) 585
Hin6I GCGC 1 cut(s) 486
HinP1I GCGC 1 cut(s) 486
HincII GTYRAC 1 cut(s) 173
HindII GTYRAC 1 cut(s) 173
HindIII AAGCTT 3 cut(s) 253, 1626, 1750
HinfI GANTC 7 cut(s) 236, 709, 737, 743, 938, 1870, 2242
HpaII CCGG 7 cut(s) 31, 706, 755, 984, 1040, 2131, 2330
HphI GGTGA 5 cut(s) 262, 667, 2260, 2319, 2326
Hpy166II GTNNAC 5 cut(s) 173, 319, 589, 1062, 1798
Hpy188I TCNGA 5 cut(s) 611, 742, 1535, 2106, 2392
Hpy188III TCNNGA 7 cut(s) 102, 198, 217, 1077, 2009, 2131, 2264
Hpy8I GTNNAC 5 cut(s) 173, 319, 589, 1062, 1798
Hpy99I CGWCG 4 cut(s) 48, 362, 611, 635
HpyAV CCTTC 8 cut(s) 128, 996, 1318, 1779, 1939, 2101, 2189, 2295
HpyCH4IV ACGT 3 cut(s) 175, 654, 1522
HpyF10VI GCNNNNNNNGC 8 cut(s) 492, 591, 820, 1199, 1219, 1412, 1657, 2068
HpyF3I CTNAG 8 cut(s) 256, 580, 1392, 1407, 1601, 1619, 1688, 2391
HpySE526I ACGT 3 cut(s) 175, 654, 1522
Hsp92I GRCGYC 1 cut(s) 585
HspAI GCGC 1 cut(s) 486
Kpn2I TCCGGA 1 cut(s) 2130
Ksp22I TGATCA 1 cut(s) 1738
Kzo9I GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
LguI GCTCTTC 1 cut(s) 2310
LmnI GCTCC 9 cut(s) 140, 200, 803, 996, 1184, 1210, 1442, 1657, 2038
LweI GCATC 5 cut(s) 1003, 1096, 1624, 1969, 2297
MaeI CTAG 5 cut(s) 102, 188, 774, 795, 993
MaeII ACGT 3 cut(s) 175, 654, 1522
MaeIII GTNAC 9 cut(s) 50, 130, 229, 1307, 1465, 1877, 2165, 2227, 2332
MalI GATC 6 cut(s) 1158, 1537, 1596, 1740, 1767, 2262
MbiI CCGCTC 1 cut(s) 999
MboI GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
MboII GAAGA 9 cut(s) 495, 870, 1146, 1559, 1589, 1775, 1879, 2138, 2327
MflI RGATCY 4 cut(s) 1156, 1535, 1594, 1765
MhlI GDGCHC 2 cut(s) 310, 1178
MluCI AATT 9 cut(s) 64, 72, 287, 1007, 1195, 1377, 1449, 1557, 1642
MlyI GAGTC 3 cut(s) 703, 737, 746
MmeI TCCRAC 7 cut(s) 589, 720, 1162, 1420, 1456, 1635, 1956
Mph1103I ATGCAT 1 cut(s) 2290
MroI TCCGGA 1 cut(s) 2130
MslI CAYNNNNRTG 2 cut(s) 1620, 2293
MspA1I CMGCKG 3 cut(s) 37, 2062, 2180
MspI CCGG 7 cut(s) 31, 706, 755, 984, 1040, 2131, 2330
MspR9I CCNGG 5 cut(s) 31, 985, 1235, 1875, 2118
Mva1269I GAATGC 2 cut(s) 451, 1347
MvaI CCWGG 3 cut(s) 1235, 1875, 2118
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 8 cut(s) 492, 591, 820, 1199, 1219, 1412, 1657, 2068
NciI CCSGG 2 cut(s) 31, 985
NdeII GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
NlaIV GGNNCC 4 cut(s) 142, 202, 1158, 1659
NmuCI GTSAC 4 cut(s) 130, 1307, 2165, 2332
NruI TCGCGA 1 cut(s) 218
NsbI TGCGCA 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 2290
NspI RCATGY 1 cut(s) 1587
PagI TCATGA 1 cut(s) 2263
PciI ACATGT 1 cut(s) 1583
PciSI GCTCTTC 1 cut(s) 2310
PctI GAATGC 2 cut(s) 451, 1347
PfeI GAWTC 4 cut(s) 236, 938, 1870, 2242
PflFI GACNNNGTC 1 cut(s) 653
PinAI ACCGGT 2 cut(s) 1039, 2329
PleI GAGTC 3 cut(s) 703, 737, 745
PpsI GAGTC 3 cut(s) 703, 737, 745
PscI ACATGT 1 cut(s) 1583
PshBI ATTAAT 2 cut(s) 75, 1641
Psp6I CCWGG 3 cut(s) 1233, 1873, 2116
PspEI GGTNACC 1 cut(s) 2332
PspGI CCWGG 3 cut(s) 1233, 1873, 2116
PspN4I GGNNCC 4 cut(s) 142, 202, 1158, 1659
PspPI GGNCC 4 cut(s) 28, 184, 757, 2198
PstI CTGCAG 1 cut(s) 1575
PsuI RGATCY 4 cut(s) 1156, 1535, 1594, 1765
PsyI GACNNNGTC 1 cut(s) 653
PvuII CAGCTG 2 cut(s) 2062, 2180
RruI TCGCGA 1 cut(s) 218
RsaI GTAC 1 cut(s) 1115
RsaNI GTAC 1 cut(s) 1114
RseI CAYNNNNRTG 2 cut(s) 1620, 2293
SapI GCTCTTC 1 cut(s) 2310
Sau3AI GATC 6 cut(s) 1156, 1535, 1594, 1738, 1765, 2260
Sau96I GGNCC 4 cut(s) 28, 184, 757, 2198
SchI GAGTC 3 cut(s) 703, 737, 746
ScrFI CCNGG 5 cut(s) 31, 985, 1235, 1875, 2118
SduI GDGCHC 2 cut(s) 310, 1178
SfaNI GCATC 5 cut(s) 1003, 1096, 1624, 1969, 2297
SfcI CTRYAG 3 cut(s) 208, 1571, 2223
SinI GGWCC 2 cut(s) 184, 757
SmiMI CAYNNNNRTG 2 cut(s) 1620, 2293
Sse9I AATT 9 cut(s) 64, 72, 287, 1007, 1195, 1377, 1449, 1557, 1642
SspMI CTAG 5 cut(s) 102, 188, 774, 795, 993
StyD4I CCNGG 5 cut(s) 29, 983, 1233, 1873, 2116
TaiI ACGT 3 cut(s) 178, 657, 1525
TaqI TCGA 5 cut(s) 630, 941, 1172, 1890, 1959
TaqII GACCGA 1 cut(s) 172
TasI AATT 9 cut(s) 64, 72, 287, 1007, 1195, 1377, 1449, 1557, 1642
TatI WGTACW 1 cut(s) 1113
TauI GCSGC 2 cut(s) 40, 1391
TfiI GAWTC 4 cut(s) 236, 938, 1870, 2242
TscAI CASTG 5 cut(s) 158, 457, 1116, 1183, 1287
TseFI GTSAC 4 cut(s) 130, 1307, 2165, 2332
Tsp45I GTSAC 4 cut(s) 130, 1307, 2165, 2332
TspDTI ATGAA 8 cut(s) 57, 458, 818, 1217, 1476, 1680, 2208, 2332
TspGWI ACGGA 2 cut(s) 389, 2186
TspRI CASTG 5 cut(s) 158, 457, 1116, 1183, 1287
Tth111I GACNNNGTC 1 cut(s) 653
VpaK11BI GGWCC 2 cut(s) 184, 757
VspI ATTAAT 2 cut(s) 75, 1641
XagI CCTNNNNNAGG 1 cut(s) 296
XapI RAATTY 2 cut(s) 287, 1557
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 1587
XmiI GTMKAC 2 cut(s) 588, 1797
XspI CTAG 5 cut(s) 102, 188, 774, 795, 993
Zsp2I ATGCAT 1 cut(s) 2290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.