Rmu_sc0000744.1_g000132

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000744.1
OG0016247
Physical Location & Seq
Reverse (-)
468941 .. 471686
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
atgaaaacagttaccttcttggctggtggaagcttcttgatccaagaaaactggattccgattgaggaaagaattgaaagaaaagatctttggaagagtaatgggtggctttctgtaactaagctttcggtgcttctatggtggccttttctggtagccaagatgagaagcacctcagaaacggctgtgacttgtgagatggctccaccgcgaagaaagaagaataacagcagcatgccttcccaagaggaagaagagcacgttgattctatttccaggaacgaagagcaacaagatcaggaagagaggcaagaggaggaggaaatcactcctgcgagcttggcacacattctcagcgctttcggtagggctcaaaaggagatggtcgacactatgaaacaattggtcgccacaatctcagcaacaaagcagcttgagcaaacaaatgatgaagagcgaccacggaaggtttcccatgaggactctgcggcaagagcatcagacaatcaaaaggcaccttcttttgtcacccaagacgatgttgttgccatgctagaaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag

Protein Analysis

187

Amino Acids

21.39

Weight (kDa)

4.99

Isoelectric Point (pI)

70.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 514
AccI GTMKAC 1 cut(s) 387
AccII CGCG 1 cut(s) 211
AciI CCGC 2 cut(s) 209, 488
AclWI GGATC 1 cut(s) 34
AfeI AGCGCT 1 cut(s) 358
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 4 cut(s) 33, 124, 339, 433
AluI AGCT 4 cut(s) 33, 124, 339, 433
Alw21I GWGCWC 1 cut(s) 261
AlwI GGATC 1 cut(s) 34
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 231, 430
AspLEI GCGC 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 520
BanI GGYRCC 1 cut(s) 514
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 243, 442
BccI CCATC 2 cut(s) 193, 376
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 1 cut(s) 277
BfaI CTAG 1 cut(s) 554
BfoI RGCGCY 1 cut(s) 360
BglII AGATCT 1 cut(s) 85
BisI GCNGC 3 cut(s) 232, 431, 489
BlsI GCNGC 3 cut(s) 233, 432, 490
Bme1390I CCNGG 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 204, 516
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 461
BseMII CTCAG 3 cut(s) 189, 367, 432
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 329, 332
BseXI GCAGC 2 cut(s) 243, 442
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 145
BshNI GGYRCC 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 261
BsnI GGCC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 261, 373
Bsp143I GATC 3 cut(s) 39, 85, 295
BspACI CCGC 2 cut(s) 209, 488
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 3 cut(s) 188, 366, 431
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 204, 516
BspPI GGATC 1 cut(s) 34
BspQI GCTCTTC 3 cut(s) 249, 279, 447
BspT107I GGYRCC 1 cut(s) 514
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 3 cut(s) 39, 85, 295
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 5 cut(s) 89, 249, 279, 297, 447
BstC8I GCNNGC 2 cut(s) 236, 337
BstDEI CTNAG 4 cut(s) 120, 175, 353, 418
BstDSI CCRYGG 1 cut(s) 461
BstFNI CGCG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 3 cut(s) 42, 88, 298
BstMBI GATC 3 cut(s) 39, 85, 295
BstMWI GCNNNNNNNGC 4 cut(s) 130, 341, 436, 494
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 243, 442
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 461
Cac8I GCNNGC 2 cut(s) 236, 337
CfoI GCGC 1 cut(s) 359
CviAII CATG 3 cut(s) 235, 476, 550
DdeI CTNAG 4 cut(s) 120, 175, 353, 418
DpnI GATC 3 cut(s) 41, 87, 297
DpnII GATC 3 cut(s) 39, 85, 295
Eam1104I CTCTTC 5 cut(s) 89, 249, 279, 297, 447
EarI CTCTTC 5 cut(s) 89, 249, 279, 297, 447
Eco24I GRGCYC 1 cut(s) 373
Eco47III AGCGCT 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 373
FaeI CATG 3 cut(s) 238, 479, 553
FaiI YATR 5 cut(s) 139, 236, 395, 477, 551
FatI CATG 3 cut(s) 234, 475, 549
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 232, 431, 489
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 3 cut(s) 232, 431, 489
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 232, 431, 489
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 1 cut(s) 145
HhaI GCGC 1 cut(s) 359
Hin1II CATG 3 cut(s) 238, 479, 553
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 2 cut(s) 31, 122
HinfI GANTC 3 cut(s) 55, 266, 482
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 60, 178, 502
Hpy188III TCNNGA 2 cut(s) 37, 299
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 4 cut(s) 25, 249, 460, 528
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 341, 436, 494
HpyF3I CTNAG 4 cut(s) 120, 175, 353, 418
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 3 cut(s) 238, 479, 553
HspAI GCGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 39, 85, 295
LguI GCTCTTC 3 cut(s) 249, 279, 447
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 7 cut(s) 9, 37, 137, 262, 284, 289, 345
Lsp1109I GCAGC 2 cut(s) 243, 442
LweI GCATC 1 cut(s) 506
MaeI CTAG 1 cut(s) 554
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 4 cut(s) 10, 115, 187, 526
MalI GATC 3 cut(s) 41, 87, 297
MboI GATC 3 cut(s) 39, 85, 295
MboII GAAGA 8 cut(s) 106, 225, 232, 263, 266, 296, 314, 464
MfeI CAATTG 1 cut(s) 401
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 2 cut(s) 261, 373
MluCI AATT 2 cut(s) 72, 401
MlyI GAGTC 1 cut(s) 476
MnlI CCTC 8 cut(s) 58, 184, 241, 300, 307, 310, 313, 472
MspR9I CCNGG 1 cut(s) 277
MunI CAATTG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 4 cut(s) 130, 341, 436, 494
NdeII GATC 3 cut(s) 39, 85, 295
NlaIII CATG 3 cut(s) 238, 479, 553
NlaIV GGNNCC 2 cut(s) 204, 516
NmuCI GTSAC 2 cut(s) 187, 526
NspI RCATGY 1 cut(s) 238
PaeI GCATGC 1 cut(s) 238
PciSI GCTCTTC 3 cut(s) 249, 279, 447
PfeI GAWTC 2 cut(s) 55, 266
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 3 cut(s) 233, 432, 490
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 204, 516
PsuI RGATCY 1 cut(s) 85
SalI GTCGAC 1 cut(s) 386
SapI GCTCTTC 3 cut(s) 249, 279, 447
SatI GCNGC 3 cut(s) 232, 431, 489
Sau3AI GATC 3 cut(s) 39, 85, 295
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 2 cut(s) 261, 373
SetI ASST 9 cut(s) 17, 35, 126, 176, 264, 341, 435, 471, 520
SfaNI GCATC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SphI GCATGC 1 cut(s) 238
Sse9I AATT 2 cut(s) 72, 401
SsiI CCGC 2 cut(s) 209, 488
SspMI CTAG 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 387
TasI AATT 2 cut(s) 72, 401
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 2 cut(s) 55, 266
TseFI GTSAC 2 cut(s) 187, 526
TseI GCWGC 2 cut(s) 231, 430
Tsp45I GTSAC 2 cut(s) 187, 526
TspDTI ATGAA 3 cut(s) 17, 410, 465
TspGWI ACGGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.