Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000755.1

Orthogroup ID

OG0019091

Physical Location & Seq

Genomic Coordinates Forward (+)

42551 .. 43786

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000755.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaaaattgaagccttccgaaatggtaaatcttgggatgggattggattgtcagttcaggctgaaatgaagcggtttacaagttctgatacctcggttcttaagctgtatgagaagaaggttcatgagttagaacatgagaagaaagcccttcagagagagattgaagagttgagacaaaatctttcaaatatctcatctacttctggggatggagctcaaaagttaaaggaggattatctacacaagttgaaccttcttgaaggacaggtttctgagctgaaaaagaaacaggatgctcaagcccaattgttgagacaaaaacaaaaaagcgatgaggctgcaaggagactacaggatgaaattcagagaatgaagactcaaaaggttcaattgcaacacaagatcaaacagggagtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

140

Amino Acids

16.23

Weight (kDa)

9.57

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019091)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000755.1_g000006 Rmu_sc0002449.1_g000007 Rmu_sc0006366.1_g000003 Rmu_sc0020431.1_g000001 Rmu_sc0023069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225040
rosa_samantha	Rh7AG452200 Rh7DG438600
rosa_wichuraiana	Rw7G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	137
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	6 cut(s)	11, 167, 189, 253, 263, 392
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	3 cut(s)	106, 218, 280
AluI	AGCT	3 cut(s)	106, 218, 280
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	3 cut(s)	169, 310, 343
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	363
ArsI	GACNNNNNNTTYG	1 cut(s)	402
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BanII	GRGCYC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	32, 206
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	3 cut(s)	169, 310, 343
BfmI	CTRYAG	1 cut(s)	353
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
BmsI	GCATC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	4 cut(s)	43, 217, 301, 364
BseMII	CTCAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	169, 310, 343
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	124
BspTI	CTTAAG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	4 cut(s)	43, 217, 301, 364
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	3 cut(s)	169, 310, 343
BstMBI	GATC	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	4 cut(s)	43, 217, 301, 364
CciI	TCATGA	1 cut(s)	124
CviAII	CATG	2 cut(s)	125, 137
CviJI	RGCY	8 cut(s)	14, 62, 106, 149, 218, 280, 305, 341
CviKI_1	RGCY	8 cut(s)	14, 62, 106, 149, 218, 280, 305, 341
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	2 cut(s)	128, 140
FaiI	YATR	3 cut(s)	111, 126, 138
FatI	CATG	2 cut(s)	124, 136
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	4 cut(s)	50, 224, 308, 371
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	128, 140
HinfI	GANTC	2 cut(s)	379, 417
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	6 cut(s)	20, 88, 156, 277, 369, 422
Hpy188III	TCNNGA	2 cut(s)	125, 260
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	5 cut(s)	25, 112, 161, 257, 266
HpyCH4V	TGCA	2 cut(s)	344, 397
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	128, 140
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	44, 192, 254, 278, 341, 398
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	286
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	4 cut(s)	127, 154, 179, 388
MfeI	CAATTG	2 cut(s)	308, 392
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	4 cut(s)	6, 308, 363, 392
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	3 cut(s)	103, 226, 331
MseI	TTAA	2 cut(s)	102, 227
MspCI	CTTAAG	1 cut(s)	101
MunI	CAATTG	2 cut(s)	308, 392
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	2 cut(s)	128, 140
PagI	TCATGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	343
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	102, 227
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	95, 108, 123, 220, 258, 273, 282, 390
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	101, 300
SmoI	CTYRAG	2 cut(s)	101, 300
Sse9I	AATT	4 cut(s)	6, 308, 363, 392
SsiI	CCGC	1 cut(s)	73
SstI	GAGCTC	1 cut(s)	220
TasI	AATT	4 cut(s)	6, 308, 363, 392
Tru1I	TTAA	2 cut(s)	102, 227
Tru9I	TTAA	2 cut(s)	102, 227
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	5 cut(s)	17, 83, 113, 375, 389
Vha464I	CTTAAG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.