Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023069.1

Orthogroup ID

OG0019091

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 664

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ctggatcgggagctgaaagaattggacaaagctctcgagcaaaaggaggctgaaatgaagcggtttacaagttctgatacctcggttcttaagctgtatgagaagaaggttcatgagttagaacatgagaagaaagcccttcagagagagattgaagagttgagacaaaatctttcaaatatctcatctacttctggggatggtgctcaaaagttgaaggaggattatctacacaagttgaaccttcttgaaggacaggtttctgagctgaaaaagaaacaggatgctcaagcccaattgttgagacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

103

Amino Acids

12.02

Weight (kDa)

6.37

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019091)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000755.1_g000006 Rmu_sc0002449.1_g000007 Rmu_sc0006366.1_g000003 Rmu_sc0020431.1_g000001 Rmu_sc0023069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225040
rosa_samantha	Rh7AG452200 Rh7DG438600
rosa_wichuraiana	Rw7G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	89
AgsI	TTSAA	5 cut(s)	155, 177, 217, 241, 251
AluBI	AGCT	4 cut(s)	13, 32, 94, 268
AluI	AGCT	4 cut(s)	13, 32, 94, 268
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	2 cut(s)	157, 298
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	2 cut(s)	157, 298
BfrI	CTTAAG	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	205, 289
BseMII	CTCAG	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	157, 298
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	112
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	4
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	205, 289
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	157, 298
BstMBI	GATC	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	205, 289
CciI	TCATGA	1 cut(s)	112
CviAII	CATG	2 cut(s)	113, 125
CviJI	RGCY	7 cut(s)	13, 32, 50, 94, 137, 268, 293
CviKI_1	RGCY	7 cut(s)	13, 32, 50, 94, 137, 268, 293
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	35
FaeI	CATG	2 cut(s)	116, 128
FaiI	YATR	3 cut(s)	99, 114, 126
FatI	CATG	2 cut(s)	112, 124
FokI	GGATG	2 cut(s)	212, 296
Hin1II	CATG	2 cut(s)	116, 128
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	3 cut(s)	76, 144, 265
Hpy188III	TCNNGA	4 cut(s)	8, 35, 113, 248
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	5 cut(s)	100, 149, 211, 245, 254
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	116, 128
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	180, 242, 266
LweI	GCATC	1 cut(s)	274
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	115, 142, 167
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	2 cut(s)	20, 296
MnlI	CCTC	3 cut(s)	40, 91, 214
MseI	TTAA	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	89
MunI	CAATTG	1 cut(s)	296
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	116, 128
PaeR7I	CTCGAG	1 cut(s)	35
PagI	TCATGA	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	8 cut(s)	15, 34, 83, 96, 111, 246, 261, 270
SfaNI	GCATC	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	3 cut(s)	35, 89, 288
SmoI	CTYRAG	3 cut(s)	35, 89, 288
Sse9I	AATT	2 cut(s)	20, 296
SsiI	CCGC	1 cut(s)	61
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	20, 296
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TspDTI	ATGAA	2 cut(s)	71, 101
Vha464I	CTTAAG	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.