Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020431.1

Orthogroup ID

OG0019091

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1018

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgtgatagatgtagaaaaagagcaagaacattcttctcttcaagaaaaactggatcgggagctgaaagaattggacaaagctctcgagcaaaaggaggctgaaatgaagcggtttacaagttctgatacctcggttcttaagctgtatgagaagaaggttcatgagttagaacatgagaagaaagcccttcagagagagattgaagagttgagacaaaatctttcaaatatctcatctacttctggggatggtgctcaaaagttaaaggaggattatctacacaagttgaaccttcttgaaggacaggtttctgagctgaaaaagaaacaggatgctcaagcccaattgttgagacaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

119

Amino Acids

13.9

Weight (kDa)

5.65

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019091)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000755.1_g000006 Rmu_sc0002449.1_g000007 Rmu_sc0006366.1_g000003 Rmu_sc0020431.1_g000001 Rmu_sc0023069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225040
rosa_samantha	Rh7AG452200 Rh7DG438600
rosa_wichuraiana	Rw7G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	175
AflII	CTTAAG	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	43, 205, 227, 291, 301
AluBI	AGCT	4 cut(s)	63, 82, 144, 318
AluI	AGCT	4 cut(s)	63, 82, 144, 318
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	2 cut(s)	207, 348
AlwI	GGATC	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	85
BaeI	ACNNNNGTAYC	2 cut(s)	119, 152
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	207, 348
BfrI	CTTAAG	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	255, 339
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	207, 348
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	162
BspPI	GGATC	1 cut(s)	62
BspTI	CTTAAG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	54
Bst6I	CTCTTC	2 cut(s)	44, 200
BstAFI	CTTAAG	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	255, 339
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	207, 348
BstMBI	GATC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	255, 339
CciI	TCATGA	1 cut(s)	162
CviAII	CATG	2 cut(s)	163, 175
CviJI	RGCY	7 cut(s)	63, 82, 100, 144, 187, 318, 343
CviKI_1	RGCY	7 cut(s)	63, 82, 100, 144, 187, 318, 343
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	44, 200
EarI	CTCTTC	2 cut(s)	44, 200
Eco57I	CTGAAG	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	85
FaeI	CATG	2 cut(s)	166, 178
FaiI	YATR	3 cut(s)	149, 164, 176
FatI	CATG	2 cut(s)	162, 174
FokI	GGATG	2 cut(s)	262, 346
Hin1II	CATG	2 cut(s)	166, 178
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	126, 194, 315
Hpy188III	TCNNGA	5 cut(s)	43, 58, 85, 163, 298
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	150, 199, 295, 304
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	166, 178
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	37, 230, 292, 316
LweI	GCATC	1 cut(s)	324
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	5 cut(s)	26, 31, 165, 192, 217
MfeI	CAATTG	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	2 cut(s)	70, 346
MnlI	CCTC	3 cut(s)	90, 141, 264
MseI	TTAA	2 cut(s)	140, 265
MspCI	CTTAAG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	346
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	2 cut(s)	166, 178
PaeR7I	CTCGAG	1 cut(s)	85
PagI	TCATGA	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	140, 265
Sau3AI	GATC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	8 cut(s)	65, 84, 133, 146, 161, 296, 311, 320
SfaNI	GCATC	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	85
SmlI	CTYRAG	3 cut(s)	85, 139, 338
SmoI	CTYRAG	3 cut(s)	85, 139, 338
Sse9I	AATT	2 cut(s)	70, 346
SsiI	CCGC	1 cut(s)	111
TaqI	TCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	70, 346
Tru1I	TTAA	2 cut(s)	140, 265
Tru9I	TTAA	2 cut(s)	140, 265
TspDTI	ATGAA	2 cut(s)	121, 151
Vha464I	CTTAAG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.