Rh7DG438600
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019091
Physical Location & Seq
Forward (+)
62408626 .. 62409596
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG438600.1

Sequence Viewer

Length: 537 bp
ATGCTTGAAAAACAATTAGATAACAATCTTGATTCATATGTACTCTTTAGTAATCACAAACTTGATTCATATGTAGATGTGATAGCTGTAGAAAAAGAGCAAGAACATTCTTCTCTTCAAGAAAAACTGGATCGGGAGGTGAAAGAATTGGACAAGGCTCTCGAGCAAAAGGAGGCTGAAATGAAGCGGTTTACAAGTTCTGATACCTCGGTTCTTAAGCTGTATGAGAAGAAGGTTCATGAGTTAGAACATGAGAAGAAAGCCCTTCAGAGAGAGATTGAAGAGTTGAGACAAAATCTTTCAAATATCTCATCTACTTCTGGGGATGGAGCTCAAAAGTTAAAGGAGGATTATCTACACAAGTTGAACCTTCTTGAAGGACAGGTTTCTGAGCTGAAAAAGAAACAGGATGCTCAAGCCCAATTGTTGAGACAAAAACAAAAAAGCGATGAGGCTGCAAGGAGACTACAGGATGAAATTCAGAGAATGAAGACTCAAAAGGTTCAATTGCAACACAAGATCAAACAGGGAGTCTGA

Protein Analysis

178

Amino Acids

20.85

Weight (kDa)

6.62

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 26 - 176 3.1e-44 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 1 cut(s) 42
AflII CTTAAG 1 cut(s) 215
AgsI TTSAA 7 cut(s) 8, 119, 281, 303, 367, 377, 506
AluBI AGCT 4 cut(s) 86, 220, 332, 394
AluI AGCT 4 cut(s) 86, 220, 332, 394
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 283, 424, 457
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 477
ArsI GACNNNNNNTTYG 1 cut(s) 516
AsuHPI GGTGA 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 161
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BanII GRGCYC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BcoDI GTCTC 3 cut(s) 283, 424, 457
BfmI CTRYAG 2 cut(s) 87, 467
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 161
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 3 cut(s) 331, 415, 478
BseJI GATNNNNATC 1 cut(s) 24
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 161
BsmAI GTCTC 3 cut(s) 283, 424, 457
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 130, 519
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 238
BspPI GGATC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 215
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 130, 519
Bst6I CTCTTC 2 cut(s) 120, 276
BstAFI CTTAAG 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 331, 415, 478
BstKTI GATC 2 cut(s) 133, 522
BstMAI GTCTC 3 cut(s) 283, 424, 457
BstMBI GATC 2 cut(s) 130, 519
BstSFI CTRYAG 2 cut(s) 87, 467
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 497
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 3 cut(s) 331, 415, 478
CciI TCATGA 1 cut(s) 238
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 239, 251
CviJI RGCY 9 cut(s) 86, 158, 176, 220, 263, 332, 394, 419, 455
CviKI_1 RGCY 9 cut(s) 86, 158, 176, 220, 263, 332, 394, 419, 455
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 390
DpnI GATC 2 cut(s) 132, 521
DpnII GATC 2 cut(s) 130, 519
Eam1104I CTCTTC 2 cut(s) 120, 276
EarI CTCTTC 2 cut(s) 120, 276
Ecl136II GAGCTC 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 334
FaeI CATG 2 cut(s) 242, 254
FaiI YATR 7 cut(s) 37, 39, 70, 72, 225, 240, 252
FatI CATG 2 cut(s) 238, 250
FauNDI CATATG 2 cut(s) 37, 70
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 3 cut(s) 338, 422, 485
FriOI GRGCYC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 456
Hin1II CATG 2 cut(s) 242, 254
HinfI GANTC 4 cut(s) 32, 65, 493, 531
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 5 cut(s) 202, 270, 391, 483, 536
Hpy188III TCNNGA 6 cut(s) 29, 119, 134, 161, 239, 374
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 4 cut(s) 226, 275, 371, 380
HpyCH4V TGCA 2 cut(s) 458, 511
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 2 cut(s) 242, 254
Kzo9I GATC 2 cut(s) 130, 519
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 6 cut(s) 113, 306, 368, 392, 455, 512
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 400
MalI GATC 2 cut(s) 132, 521
MboI GATC 2 cut(s) 130, 519
MboII GAAGA 6 cut(s) 102, 107, 241, 268, 293, 502
MfeI CAATTG 2 cut(s) 422, 506
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 5 cut(s) 14, 146, 422, 477, 506
MlyI GAGTC 1 cut(s) 487
MnlI CCTC 5 cut(s) 130, 166, 217, 340, 445
MseI TTAA 2 cut(s) 216, 341
MspCI CTTAAG 1 cut(s) 215
MunI CAATTG 2 cut(s) 422, 506
NdeI CATATG 2 cut(s) 37, 70
NdeII GATC 2 cut(s) 130, 519
NlaIII CATG 2 cut(s) 242, 254
PaeR7I CTCGAG 1 cut(s) 161
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 2 cut(s) 32, 65
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 334
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 2 cut(s) 216, 341
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 2 cut(s) 130, 519
SchI GAGTC 1 cut(s) 487
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 87, 467
Sfr274I CTCGAG 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 3 cut(s) 161, 215, 414
SmoI CTYRAG 3 cut(s) 161, 215, 414
Sse9I AATT 5 cut(s) 14, 146, 422, 477, 506
SsiI CCGC 1 cut(s) 187
SstI GAGCTC 1 cut(s) 334
TaqI TCGA 1 cut(s) 162
TasI AATT 5 cut(s) 14, 146, 422, 477, 506
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 2 cut(s) 32, 65
Tru1I TTAA 2 cut(s) 216, 341
Tru9I TTAA 2 cut(s) 216, 341
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 6 cut(s) 24, 57, 197, 227, 489, 503
Vha464I CTTAAG 1 cut(s) 215
XapI RAATTY 1 cut(s) 477
XhoI CTCGAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.