Rroxscaffold_3G00225040
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019091
Physical Location & Seq
Forward (+)
8271414 .. 8282148
10735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225040.1

Sequence Viewer

Length: 360 bp
ATGAAGCGGTTTACAAGTTTTGATACCTCGGTTCTTAAGCTGTATGAGAAGAAGGTTCATGAGTTAGAACATGAGAAGAAATCCCTTCAGAGAGAGATTGAAGAGTTGAGACAAAATCTTTCAAATATCTCATCTACTTCTGGGGATGGAGCTCAAAAGTTAAAGGAGGATTATCTACACAATTTGAACCTTCTTGAAGGACAGGTTTCTGAGCTCAAAACGAAACAGGATGCTCAAGCCCAATTGTTGAGACAAGAACAAAAAAGCGATGAGGCTGCAAGGAGACTACAGGATGAAATTCAGAGAATAAAGACTCAAAAGGTTCAATTGCAACACAAGATCAAACAGGAGTCTGAGTAG

Protein Analysis

119

Amino Acids

14.02

Weight (kDa)

7.95

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIF21A_4th PF25764 1 - 119 9.4e-33 KIF21A-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 1 cut(s) 71
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 5 cut(s) 101, 123, 187, 197, 326
AluBI AGCT 3 cut(s) 40, 152, 214
AluI AGCT 3 cut(s) 40, 152, 214
Alw21I GWGCWC 2 cut(s) 154, 216
Alw26I GTCTC 3 cut(s) 103, 244, 277
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 297
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BanII GRGCYC 2 cut(s) 154, 216
Bbv12I GWGCWC 2 cut(s) 154, 216
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BcoDI GTCTC 3 cut(s) 103, 244, 277
BfmI CTRYAG 1 cut(s) 287
BfrI CTTAAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmsI GCATC 1 cut(s) 220
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 3 cut(s) 151, 235, 298
BseMII CTCAG 2 cut(s) 201, 345
BseXI GCAGC 1 cut(s) 262
BsiHKAI GWGCWC 2 cut(s) 154, 216
BsmAI GTCTC 3 cut(s) 103, 244, 277
Bsp1286I GDGCHC 2 cut(s) 154, 216
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 202, 346
BspHI TCATGA 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 210, 354
BstF5I GGATG 3 cut(s) 151, 235, 298
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 3 cut(s) 103, 244, 277
BstMBI GATC 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 262
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 151, 235, 298
CciI TCATGA 1 cut(s) 58
CviAII CATG 2 cut(s) 59, 71
CviJI RGCY 5 cut(s) 40, 152, 214, 239, 275
CviKI_1 RGCY 5 cut(s) 40, 152, 214, 239, 275
DdeI CTNAG 2 cut(s) 210, 354
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Ecl136II GAGCTC 2 cut(s) 152, 214
Eco24I GRGCYC 2 cut(s) 154, 216
Eco53kI GAGCTC 2 cut(s) 152, 214
Eco57I CTGAAG 1 cut(s) 71
EcoICRI GAGCTC 2 cut(s) 152, 214
EcoT38I GRGCYC 2 cut(s) 154, 216
FaeI CATG 2 cut(s) 62, 74
FaiI YATR 3 cut(s) 45, 60, 72
FatI CATG 2 cut(s) 58, 70
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 3 cut(s) 158, 242, 305
FriOI GRGCYC 2 cut(s) 154, 216
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
Hin1II CATG 2 cut(s) 62, 74
HinfI GANTC 2 cut(s) 313, 350
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 4 cut(s) 90, 211, 303, 355
Hpy188III TCNNGA 2 cut(s) 59, 194
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 4 cut(s) 46, 95, 191, 200
HpyCH4V TGCA 2 cut(s) 278, 331
HpyF3I CTNAG 2 cut(s) 210, 354
Hsp92II CATG 2 cut(s) 62, 74
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 126, 188, 212, 275, 332
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 220
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 3 cut(s) 61, 88, 113
MfeI CAATTG 2 cut(s) 242, 326
MhlI GDGCHC 2 cut(s) 154, 216
MluCI AATT 4 cut(s) 181, 242, 297, 326
MlyI GAGTC 2 cut(s) 307, 359
MnlI CCTC 3 cut(s) 37, 160, 265
MseI TTAA 2 cut(s) 36, 161
MspCI CTTAAG 1 cut(s) 35
MunI CAATTG 2 cut(s) 242, 326
NdeII GATC 1 cut(s) 339
NlaIII CATG 2 cut(s) 62, 74
PagI TCATGA 1 cut(s) 58
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 2 cut(s) 307, 358
PpsI GAGTC 2 cut(s) 307, 358
Psp124BI GAGCTC 2 cut(s) 154, 216
SacI GAGCTC 2 cut(s) 154, 216
SaqAI TTAA 2 cut(s) 36, 161
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 339
SchI GAGTC 2 cut(s) 307, 359
SduI GDGCHC 2 cut(s) 154, 216
SetI ASST 8 cut(s) 29, 42, 57, 154, 192, 207, 216, 324
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 35, 234
SmoI CTYRAG 2 cut(s) 35, 234
Sse9I AATT 4 cut(s) 181, 242, 297, 326
SsiI CCGC 1 cut(s) 7
SstI GAGCTC 2 cut(s) 154, 216
TasI AATT 4 cut(s) 181, 242, 297, 326
Tru1I TTAA 2 cut(s) 36, 161
Tru9I TTAA 2 cut(s) 36, 161
TseI GCWGC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 17, 47, 309
Vha464I CTTAAG 1 cut(s) 35
XapI RAATTY 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.