Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002449.1

Orthogroup ID

OG0019091

Physical Location & Seq

Genomic Coordinates Forward (+)

22840 .. 23674

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002449.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgttgaagcggttatcagctgaaatgaagcggtttacaagttttgatacctcggttcttaagctgtatgagaagaaggttcatgagttagaacatgagaagaaatcccttcagagagagattgaagagttgagacaaaatctttcaaatatctcatctacttctggggatggagctcaaaagttaaaggaggattatctacacaatttgaaccttcttgaaggacaggtttctgagctgaaaaaaaaacaggatgctcaagcccaattgttgagacaaaaacaaaaaagcgatgaggctgcaaggagactacaggatgaaattcagagaataaagactcaaaaggttcaattgcaacacaagatcaaacaggagtctgagcagcttagattatggaaagcatcacgagaaaaagaagttcttcaggtaaatagaatggaggaatatcatagatgttgtcacgccccgaattttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

159

Amino Acids

18.95

Weight (kDa)

9.28

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019091)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000755.1_g000006 Rmu_sc0002449.1_g000007 Rmu_sc0006366.1_g000003 Rmu_sc0020431.1_g000001 Rmu_sc0023069.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225040
rosa_samantha	Rh7AG452200 Rh7DG438600
rosa_wichuraiana	Rw7G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	10, 31
AcsI	RAATTY	2 cut(s)	321, 469
AcuI	CTGAAG	2 cut(s)	95, 407
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	7 cut(s)	7, 125, 147, 211, 221, 350, 476
AluBI	AGCT	5 cut(s)	20, 64, 176, 238, 385
AluI	AGCT	5 cut(s)	20, 64, 176, 238, 385
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	3 cut(s)	127, 268, 301
ApeKI	GCWGC	2 cut(s)	299, 382
ApoI	RAATTY	2 cut(s)	321, 469
Asp700I	GAANNNNTTC	1 cut(s)	420
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	286, 394
BccI	CCATC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BcoDI	GTCTC	3 cut(s)	127, 268, 301
BfmI	CTRYAG	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	2 cut(s)	300, 383
BlsI	GCNGC	2 cut(s)	301, 384
BmsI	GCATC	2 cut(s)	244, 410
BpuEI	CTTGAG	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	175, 259, 322
BseMII	CTCAG	2 cut(s)	225, 369
BseXI	GCAGC	2 cut(s)	286, 394
BsiHKAI	GWGCWC	1 cut(s)	178
BsmAI	GTCTC	3 cut(s)	127, 268, 301
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	2 cut(s)	10, 31
BspCNI	CTCAG	2 cut(s)	226, 370
BspHI	TCATGA	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst6I	CTCTTC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	234, 378, 386
BstF5I	GGATG	3 cut(s)	175, 259, 322
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	3 cut(s)	127, 268, 301
BstMBI	GATC	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	286, 394
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	175, 259, 322
CciI	TCATGA	1 cut(s)	82
CviAII	CATG	2 cut(s)	83, 95
CviJI	RGCY	7 cut(s)	20, 64, 176, 238, 263, 299, 385
CviKI_1	RGCY	7 cut(s)	20, 64, 176, 238, 263, 299, 385
DdeI	CTNAG	3 cut(s)	234, 378, 386
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	95, 407
EcoICRI	GAGCTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	86, 98
FaiI	YATR	5 cut(s)	69, 84, 96, 394, 450
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FatI	CATG	2 cut(s)	82, 94
Fnu4HI	GCNGC	2 cut(s)	300, 383
FokI	GGATG	3 cut(s)	182, 266, 329
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	300, 383
GluI	GCNGC	2 cut(s)	300, 383
Hin1II	CATG	2 cut(s)	86, 98
HinfI	GANTC	2 cut(s)	337, 374
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	4 cut(s)	114, 235, 327, 379
Hpy188III	TCNNGA	3 cut(s)	83, 218, 405
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	4 cut(s)	70, 119, 215, 224
HpyCH4V	TGCA	2 cut(s)	302, 355
HpyF3I	CTNAG	3 cut(s)	234, 378, 386
Hsp92II	CATG	2 cut(s)	86, 98
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	6 cut(s)	150, 212, 236, 299, 356, 410
Lsp1109I	GCAGC	2 cut(s)	286, 394
LweI	GCATC	2 cut(s)	244, 410
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	4 cut(s)	85, 112, 137, 413
MfeI	CAATTG	2 cut(s)	266, 350
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	5 cut(s)	205, 266, 321, 350, 469
MlyI	GAGTC	2 cut(s)	331, 383
MnlI	CCTC	4 cut(s)	61, 184, 289, 433
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	60, 185
MspA1I	CMGCKG	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	59
MunI	CAATTG	2 cut(s)	266, 350
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	86, 98
NmuCI	GTSAC	1 cut(s)	458
PagI	TCATGA	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	301, 384
PleI	GAGTC	2 cut(s)	331, 382
PpsI	GAGTC	2 cut(s)	331, 382
Psp124BI	GAGCTC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	60, 185
SatI	GCNGC	2 cut(s)	300, 383
Sau3AI	GATC	1 cut(s)	363
SchI	GAGTC	2 cut(s)	331, 383
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	244, 410
SfcI	CTRYAG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	59, 258
SmoI	CTYRAG	2 cut(s)	59, 258
Sse9I	AATT	5 cut(s)	205, 266, 321, 350, 469
SsiI	CCGC	2 cut(s)	10, 31
SstI	GAGCTC	1 cut(s)	178
TasI	AATT	5 cut(s)	205, 266, 321, 350, 469
Tru1I	TTAA	2 cut(s)	60, 185
Tru9I	TTAA	2 cut(s)	60, 185
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	299, 382
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	41, 71, 333
Vha464I	CTTAAG	1 cut(s)	59
XapI	RAATTY	2 cut(s)	321, 469
XmnI	GAANNNNTTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.