Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000796.1

Orthogroup ID

OG0007985

Physical Location & Seq

Genomic Coordinates Reverse (-)

105562 .. 106116

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggattggagagattcacatttgaagaatagtcctgaactgaaagagagaaatagtaagatccctacttttctatatgcaatgcctttttcatccaacaggatatttcttgaagaaacctccctagttgctcggcctggactacccatgaaagatatccaggaaaggatggttgctagattgaggcacctaggcataaaagttaagagcattgaagaggatgagcattgtgtcattccgatgggcgggccccttccggtgctccctcaaagagttgttggaattggcggtacagctgggatggtgcacccttcaacaggatatatggttgcgaggactctggcagcagctcctattgttgcaaatgccatagttcagtaccttggttctgatagaagtctttcaggaaatgaactgtcagcagtaagtttggaaagatttgtggcccatacaaaggaggagacaaagggagttcttctgtttcggcatgtccattctgctcaagctggatttgaatgccacaagaaggtttttcaatgcatttttttgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009536 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016853 GO:0016860 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045436 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

184

Amino Acids

20.42

Weight (kDa)

9.07

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lycopene_cycl	PF05834	1 - 140	3.8e-50	Lycopene cyclase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10230 AT3G10230
fragaria_vesca	FvH4_6g25130 FvH4_6g25130 FvH4_6g25130 FvH4_6g25130
malus_domestica	MD00G1049000.v1.1 MD00G1074700.v1.1
prunus_persica	Prupe.7G046100_v2.0.a1
pyrus_communis	pycom14g07340
rosa_chinensis	RchiOBHm_Chr2g0125001
rosa_laevigata	RLG00000018841
rosa_multiflora	Rmu_sc0000796.1_g000023 Rmu_sc0000796.1_g000027 Rmu_sc0008068.1_g000002 Rmu_sc0010311.1_g000002
rosa_roxburghii	Rroxscaffold_2G00118470 Rroxscaffold_2G00118770
rosa_rugosa	Rorug02G0254700
rosa_samantha	Rh2AG313400 Rh2BG321700 Rh2CG302900 Rh2DG338800
rosa_wichuraiana	Rw2G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AciI	CCGC	2 cut(s)	246, 288
AclWI	GGATC	1 cut(s)	55
AfaI	GTAC	2 cut(s)	292, 380
AfiI	CCNNNNNNNGG	4 cut(s)	245, 317, 454, 526
AgsI	TTSAA	6 cut(s)	25, 113, 215, 315, 515, 536
AjnI	CCWGG	2 cut(s)	136, 159
AluBI	AGCT	3 cut(s)	296, 350, 506
AluI	AGCT	3 cut(s)	296, 350, 506
Alw21I	GWGCWC	2 cut(s)	264, 309
Alw26I	GTCTC	1 cut(s)	455
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	3 cut(s)	134, 248, 444
ApaI	GGGCCC	1 cut(s)	252
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	344, 347
Asp700I	GAANNNNTTC	1 cut(s)	400
AspA2I	CCTAGG	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	248, 249, 445
AvrII	CCTAGG	1 cut(s)	190
BaeGI	GKGCMC	2 cut(s)	252, 309
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	264, 309
BbvI	GCAGC	2 cut(s)	356, 359
BccI	CCATC	3 cut(s)	163, 235, 295
BciT130I	CCWGG	2 cut(s)	138, 161
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	4 cut(s)	125, 177, 191, 553
BisI	GCNGC	2 cut(s)	345, 348
BlnI	CCTAGG	1 cut(s)	190
BlsI	GCNGC	2 cut(s)	346, 349
Bme1390I	CCNGG	2 cut(s)	138, 161
BmgT120I	GGNCC	3 cut(s)	248, 249, 445
BmiI	GGNNCC	3 cut(s)	188, 250, 251
BmrFI	CCNGG	2 cut(s)	138, 161
BpuEI	CTTGAG	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	190, 382
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 317, 454, 526
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	138, 161
BseDI	CCNNGG	2 cut(s)	190, 382
BseGI	GGATG	4 cut(s)	92, 174, 226, 306
BseLI	CCNNNNNNNGG	4 cut(s)	245, 317, 454, 526
BseMI	GCAATG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	2 cut(s)	252, 309
BseXI	GCAGC	2 cut(s)	356, 359
BseYI	CCCAGC	1 cut(s)	296
BshFI	GGCC	3 cut(s)	136, 250, 446
BshNI	GGYRCC	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	264, 309
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	245, 317, 454, 526
BsmAI	GTCTC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	136, 250, 446
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	3 cut(s)	252, 264, 309
Bsp143I	GATC	2 cut(s)	60, 549
BspACI	CCGC	2 cut(s)	246, 288
BspANI	GGCC	3 cut(s)	136, 250, 446
BspLI	GGNNCC	3 cut(s)	188, 250, 251
BspPI	GGATC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	190, 382
BssMI	GATC	2 cut(s)	60, 549
BssT1I	CCWWGG	2 cut(s)	190, 382
Bst2UI	CCWGG	2 cut(s)	138, 161
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	4 cut(s)	92, 174, 226, 306
BstKTI	GATC	2 cut(s)	63, 552
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	2 cut(s)	60, 549
BstNI	CCWGG	2 cut(s)	138, 161
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	136, 159
BstSLI	GKGCMC	2 cut(s)	252, 309
BstV1I	GCAGC	2 cut(s)	356, 359
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	136, 250, 446
BtsCI	GGATG	4 cut(s)	92, 174, 226, 306
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	3 cut(s)	248, 249, 445
Csp6I	GTAC	2 cut(s)	291, 379
CviAII	CATG	2 cut(s)	148, 488
CviJI	RGCY	6 cut(s)	136, 250, 296, 350, 446, 506
CviKI_1	RGCY	6 cut(s)	136, 250, 296, 350, 446, 506
CviQI	GTAC	2 cut(s)	291, 379
DpnI	GATC	2 cut(s)	62, 551
DpnII	GATC	2 cut(s)	60, 549
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	190, 382
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	136, 159
EcoRV	GATATC	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	190, 382
EcoT22I	ATGCAT	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	190, 382
FaeI	CATG	2 cut(s)	151, 491
FaiI	YATR	9 cut(s)	76, 78, 149, 197, 324, 326, 371, 450, 489
FatI	CATG	2 cut(s)	147, 487
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	2 cut(s)	345, 348
FokI	GGATG	4 cut(s)	79, 181, 233, 313
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	345, 348
FspBI	CTAG	4 cut(s)	125, 177, 191, 553
GluI	GCNGC	2 cut(s)	345, 348
GsaI	CCCAGC	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	136, 250, 446
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	2 cut(s)	151, 491
HinfI	GANTC	2 cut(s)	14, 337
HpaII	CCGG	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	240, 391
Hpy188III	TCNNGA	3 cut(s)	35, 110, 405
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	3 cut(s)	263, 321, 520
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	4 cut(s)	80, 307, 362, 540
Hsp92II	CATG	2 cut(s)	151, 491
Kzo9I	GATC	2 cut(s)	60, 549
LmnI	GCTCC	2 cut(s)	267, 355
Lsp1109I	GCAGC	2 cut(s)	356, 359
MaeI	CTAG	4 cut(s)	125, 177, 191, 553
MalI	GATC	2 cut(s)	62, 551
MboI	GATC	2 cut(s)	60, 549
MboII	GAAGA	4 cut(s)	37, 125, 227, 467
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	3 cut(s)	252, 264, 309
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	120, 259
MnlI	CCTC	6 cut(s)	130, 177, 211, 276, 327, 451
Mph1103I	ATGCAT	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	400
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	138, 161
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	2 cut(s)	138, 161
NdeII	GATC	2 cut(s)	60, 549
NlaIII	CATG	2 cut(s)	151, 491
NlaIV	GGNNCC	3 cut(s)	188, 250, 251
NmeAIII	GCCGAG	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	542
NspI	RCATGY	1 cut(s)	491
PctI	GAATGC	1 cut(s)	521
PdmI	GAANNNNTTC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	346, 349
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	136, 159
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	136, 159
PspN4I	GGNNCC	3 cut(s)	188, 250, 251
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	3 cut(s)	248, 249, 445
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	292, 380
RsaNI	GTAC	2 cut(s)	291, 379
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	345, 348
Sau3AI	GATC	2 cut(s)	60, 549
Sau96I	GGNCC	3 cut(s)	248, 249, 445
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	138, 161
SduI	GDGCHC	3 cut(s)	252, 264, 309
SetI	ASST	7 cut(s)	122, 192, 298, 352, 384, 508, 531
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	2 cut(s)	246, 288
SspMI	CTAG	4 cut(s)	125, 177, 191, 553
StyD4I	CCNGG	2 cut(s)	136, 159
StyI	CCWWGG	2 cut(s)	190, 382
TaaI	ACNGT	1 cut(s)	417
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	344, 347
TspDTI	ATGAA	3 cut(s)	81, 164, 426
VneI	GTGCAC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	315
XceI	RCATGY	1 cut(s)	491
XmaJI	CCTAGG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	400
XspI	CTAG	4 cut(s)	125, 177, 191, 553
Zsp2I	ATGCAT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.