Rmu_sc0000871.1_g000025

Carbohydrate esterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000871.1
OG0011720
Physical Location & Seq
Forward (+)
114856 .. 116045
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
atggccggccgcggaggcgttgtaaacgacactctcaccggaatcaccacctgggacggggtcgttcctccagagtgcctccccaacaaatccatcttccgactcagcgcaaacctcacgtgggttgaagcccgcgagcctctccacgctgatatcgacgtggagaagacgaatgggatcggacccgggatgccattcgccagtgcgatccttgccaatcctgctagcagtattgatgcgattggtttagtcccgtgcgcaatcggcgggactaacctaagccaatgggaacgagggtctttcctatacagacagatgattgggagagccaaggtggctttgttaaaggtgaatgataatggcgcctcaatcaggggactactctggtatcaaggtgagagcgatacgactagtatagaagacgcccgatcttacaaagccagattggaaaccttctttggagacctccggttggatctgcaatttcctatgcttccaataatccaggttgcaattgcatctgggtcgggaccatacatagagaccattagagaagctcagatgggaattgacctactaaacgtgcgaaccgttgatgccaagggtctaacattagaacctgataggttgcacctcactaccccgagtcaggttcgactaggggaaatgttggctgacgcatattttcagttaattcccagcactacaagcaataatgctcggagaaatggacatccttgtttgatcatccattttgttattggcttgttatggaaagggatgactacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SASA

Protein Analysis

263

Amino Acids

28.59

Weight (kDa)

5.83

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SASA PF03629 1 - 230 1.1e-80 Carbohydrate esterase, sialic acid-specific acetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011720)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53010
fragaria_vesca FvH4_2g33800
malus_domestica MD08G1092200.v1.1 MD15G1076700.v1.1
prunus_persica Prupe.1G430100_v2.0.a1
pyrus_communis pycom08g07490 pycom08g07500 pycom15g07150
rosa_chinensis RchiOBHm_Chr6g0308761
rosa_laevigata RLG00000010622
rosa_multiflora Rmu_sc0000871.1_g000025 Rmu_sc0009346.1_g000012
rosa_roxburghii Rroxscaffold_7G00159960
rosa_rugosa Rorug06G0368100
rosa_samantha Rh6AG479200 Rh6BG488800 Rh6CG494000 Rh6DG479600
rosa_wichuraiana Rw6G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 2 cut(s) 12, 135
AciI CCGC 4 cut(s) 10, 12, 133, 267
AclWI GGATC 3 cut(s) 185, 202, 483
AcoI YGGCCR 2 cut(s) 3, 7
AcvI CACGTG 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 363, 423
AfiI CCNNNNNNNGG 5 cut(s) 57, 121, 372, 472, 649
AgsI TTSAA 1 cut(s) 128
AhlI ACTAGT 1 cut(s) 410
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 50, 504
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw26I GTCTC 2 cut(s) 456, 536
AlwI GGATC 3 cut(s) 185, 202, 483
Ama87I CYCGRG 2 cut(s) 185, 643
AoxI GGCC 2 cut(s) 3, 7
AspLEI GCGC 3 cut(s) 110, 260, 365
AspS9I GGNCC 2 cut(s) 182, 530
AsuC2I CCSGG 2 cut(s) 186, 187
AsuHPI GGTGA 4 cut(s) 28, 37, 361, 407
AsuNHI GCTAGC 1 cut(s) 224
AvaI CYCGRG 2 cut(s) 185, 643
AvaII GGWCC 2 cut(s) 182, 530
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanI GGYRCC 1 cut(s) 362
BbrPI CACGTG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 173, 426
BccI CCATC 2 cut(s) 101, 556
BcgI CGANNNNNNTGC 2 cut(s) 507, 541
BciT130I CCWGG 2 cut(s) 52, 506
BclI TGATCA 1 cut(s) 744
BcnI CCSGG 2 cut(s) 186, 187
BcoDI GTCTC 2 cut(s) 456, 536
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 3 cut(s) 225, 411, 659
BfoI RGCGCY 1 cut(s) 366
BglI GCCNNNNNGGC 2 cut(s) 15, 335
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 4 cut(s) 52, 186, 187, 506
Bme18I GGWCC 2 cut(s) 182, 530
BmeT110I CYCGRG 2 cut(s) 185, 643
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 182, 530
BmiI GGNNCC 3 cut(s) 184, 364, 531
BmrFI CCNGG 4 cut(s) 52, 186, 187, 506
BmsI GCATC 4 cut(s) 180, 226, 527, 586
BmtI GCTAGC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 173, 426
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 186, 187
BsaAI YACGTR 1 cut(s) 120
BsaHI GRCGYC 2 cut(s) 363, 423
BsaI GGTCTC 2 cut(s) 456, 536
BsaJI CCNNGG 5 cut(s) 10, 51, 185, 330, 600
BsaWI WCCGGW 2 cut(s) 38, 468
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 121, 372, 472, 649
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 52, 506
BseDI CCNNGG 5 cut(s) 10, 51, 185, 330, 600
BseGI GGATG 4 cut(s) 195, 733, 747, 786
BseLI CCNNNNNNNGG 5 cut(s) 57, 121, 372, 472, 649
BseMII CTCAG 2 cut(s) 118, 572
BseNI ACTGG 1 cut(s) 201
BseX3I CGGCCG 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 12, 135
Bsh1285I CGRYCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 5, 9
BshNI GGYRCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 10
BsiHKCI CYCGRG 2 cut(s) 185, 643
BsiSI CCGG 4 cut(s) 6, 39, 186, 469
BslFI GGGAC 5 cut(s) 68, 236, 283, 390, 543
BslI CCNNNNNNNGG 5 cut(s) 57, 121, 372, 472, 649
BsmAI GTCTC 2 cut(s) 456, 536
BsmFI GGGAC 5 cut(s) 68, 236, 283, 390, 543
BsnI GGCC 2 cut(s) 5, 9
Bso31I GGTCTC 2 cut(s) 456, 536
BsoBI CYCGRG 2 cut(s) 185, 643
Bsp143I GATC 5 cut(s) 177, 207, 428, 475, 744
BspACI CCGC 4 cut(s) 10, 12, 133, 267
BspANI GGCC 2 cut(s) 5, 9
BspCNI CTCAG 2 cut(s) 117, 571
BspFNI CGCG 2 cut(s) 12, 135
BspLI GGNNCC 3 cut(s) 184, 364, 531
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 3 cut(s) 185, 202, 483
BspT107I GGYRCC 1 cut(s) 362
BspTNI GGTCTC 2 cut(s) 456, 536
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 5 cut(s) 10, 51, 185, 330, 600
BssMI GATC 5 cut(s) 177, 207, 428, 475, 744
BssNI GRCGYC 2 cut(s) 363, 423
BssT1I CCWWGG 2 cut(s) 330, 600
Bst2UI CCWGG 2 cut(s) 52, 506
Bst4CI ACNGT 1 cut(s) 592
BstACI GRCGYC 2 cut(s) 363, 423
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 4 cut(s) 7, 133, 137, 226
BstDEI CTNAG 3 cut(s) 104, 278, 558
BstDSI CCRYGG 1 cut(s) 10
BstENI CCTNNNNNAGG 1 cut(s) 370
BstF5I GGATG 4 cut(s) 195, 733, 747, 786
BstFNI CGCG 2 cut(s) 12, 135
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 3 cut(s) 110, 260, 365
BstKTI GATC 5 cut(s) 180, 210, 431, 478, 747
BstMAI GTCTC 2 cut(s) 456, 536
BstMBI GATC 5 cut(s) 177, 207, 428, 475, 744
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 6 cut(s) 15, 212, 221, 264, 335, 708
BstNI CCWGG 2 cut(s) 52, 506
BstSCI CCNGG 4 cut(s) 50, 184, 185, 504
BstUI CGCG 2 cut(s) 12, 135
BstV2I GAAGAC 2 cut(s) 173, 426
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZI CGGCCG 1 cut(s) 7
BsuRI GGCC 2 cut(s) 5, 9
BtgI CCRYGG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 4 cut(s) 195, 733, 747, 786
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 7, 133, 137, 226
CfoI GCGC 3 cut(s) 110, 260, 365
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 182, 530
Cfr42I CCGCGG 1 cut(s) 13
Cfr9I CCCGGG 1 cut(s) 185
CseI GACGC 2 cut(s) 431, 686
DdeI CTNAG 3 cut(s) 104, 278, 558
DinI GGCGCC 1 cut(s) 364
DpnI GATC 5 cut(s) 179, 209, 430, 477, 746
DpnII GATC 5 cut(s) 177, 207, 428, 475, 744
EaeI YGGCCR 2 cut(s) 3, 7
EagI CGGCCG 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 330, 600
Eco31I GGTCTC 2 cut(s) 456, 536
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 182, 530
Eco52I CGGCCG 1 cut(s) 7
Eco72I CACGTG 1 cut(s) 120
Eco88I CYCGRG 2 cut(s) 185, 643
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 50, 504
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 330, 600
EgeI GGCGCC 1 cut(s) 364
EheI GGCGCC 1 cut(s) 364
ErhI CCWWGG 2 cut(s) 330, 600
FaiI YATR 8 cut(s) 307, 416, 491, 535, 539, 682, 772, 790
FaqI GGGAC 5 cut(s) 68, 236, 283, 390, 543
FauI CCCGC 2 cut(s) 140, 260
FbaI TGATCA 1 cut(s) 744
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 3 cut(s) 202, 720, 734
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 3 cut(s) 225, 411, 659
FspI TGCGCA 1 cut(s) 259
GlaI GCGC 3 cut(s) 109, 259, 364
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 2 cut(s) 5, 9
HapII CCGG 4 cut(s) 6, 39, 186, 469
HgaI GACGC 2 cut(s) 431, 686
HhaI GCGC 3 cut(s) 110, 260, 365
Hin1I GRCGYC 2 cut(s) 363, 423
Hin6I GCGC 3 cut(s) 108, 258, 363
HinP1I GCGC 3 cut(s) 108, 258, 363
HinfI GANTC 3 cut(s) 42, 102, 646
HpaII CCGG 4 cut(s) 6, 39, 186, 469
HphI GGTGA 4 cut(s) 28, 37, 361, 407
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 101, 182, 561, 723
Hpy188III TCNNGA 2 cut(s) 71, 528
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 3 cut(s) 119, 159, 582
HpyCH4V TGCA 4 cut(s) 481, 512, 518, 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 212, 221, 264, 335, 708
HpyF3I CTNAG 3 cut(s) 104, 278, 558
HpySE526I ACGT 3 cut(s) 119, 159, 582
Hsp92I GRCGYC 2 cut(s) 363, 423
HspAI GCGC 3 cut(s) 108, 258, 363
KasI GGCGCC 1 cut(s) 362
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 744
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 5 cut(s) 177, 207, 428, 475, 744
LweI GCATC 4 cut(s) 180, 226, 527, 586
MaeI CTAG 3 cut(s) 225, 411, 659
MaeII ACGT 3 cut(s) 119, 159, 582
MalI GATC 5 cut(s) 179, 209, 430, 477, 746
MboI GATC 5 cut(s) 177, 207, 428, 475, 744
MboII GAAGA 3 cut(s) 88, 178, 431
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 1 cut(s) 475
MluCI AATT 4 cut(s) 482, 513, 567, 693
Mly113I GGCGCC 1 cut(s) 363
MlyI GAGTC 2 cut(s) 96, 655
MmeI TCCRAC 2 cut(s) 124, 453
MnlI CCTC 9 cut(s) 8, 78, 89, 125, 150, 287, 376, 476, 644
MroNI GCCGGC 1 cut(s) 5
MseI TTAA 2 cut(s) 344, 692
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 4 cut(s) 6, 39, 186, 469
MspR9I CCNGG 4 cut(s) 52, 186, 187, 506
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 2 cut(s) 52, 506
MvnI CGCG 2 cut(s) 12, 135
MwoI GCNNNNNNNGC 6 cut(s) 15, 212, 221, 264, 335, 708
NaeI GCCGGC 1 cut(s) 7
NarI GGCGCC 1 cut(s) 363
NciI CCSGG 2 cut(s) 186, 187
NdeII GATC 5 cut(s) 177, 207, 428, 475, 744
NgoMIV GCCGGC 1 cut(s) 5
NheI GCTAGC 1 cut(s) 224
NlaIV GGNNCC 3 cut(s) 184, 364, 531
NsbI TGCGCA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 588
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 42
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 2 cut(s) 96, 654
PluTI GGCGCC 1 cut(s) 366
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 2 cut(s) 96, 654
Ppu21I YACGTR 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 50, 504
PspCI CACGTG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 698
PspGI CCWGG 2 cut(s) 50, 504
PspN4I GGNNCC 3 cut(s) 184, 364, 531
PspPI GGNCC 2 cut(s) 182, 530
PsuI RGATCY 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 59
RigI GGCCGGCC 1 cut(s) 9
SacII CCGCGG 1 cut(s) 13
SaqAI TTAA 2 cut(s) 344, 692
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 5 cut(s) 177, 207, 428, 475, 744
Sau96I GGNCC 2 cut(s) 182, 530
SchI GAGTC 2 cut(s) 96, 655
ScrFI CCNGG 4 cut(s) 52, 186, 187, 506
SfaNI GCATC 4 cut(s) 180, 226, 527, 586
SfoI GGCGCC 1 cut(s) 364
Sfr303I CCGCGG 1 cut(s) 13
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 2 cut(s) 182, 530
SmaI CCCGGG 1 cut(s) 187
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 4 cut(s) 482, 513, 567, 693
SsiI CCGC 4 cut(s) 10, 12, 133, 267
SspDI GGCGCC 1 cut(s) 362
SspMI CTAG 3 cut(s) 225, 411, 659
StyD4I CCNGG 4 cut(s) 50, 184, 185, 504
StyI CCWWGG 2 cut(s) 330, 600
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 3 cut(s) 122, 162, 585
TaqI TCGA 2 cut(s) 156, 655
TasI AATT 4 cut(s) 482, 513, 567, 693
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 344, 692
Tru9I TTAA 2 cut(s) 344, 692
TscAI CASTG 1 cut(s) 208
TspMI CCCGGG 1 cut(s) 185
TspRI CASTG 1 cut(s) 208
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 182, 530
XagI CCTNNNNNAGG 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XmaI CCCGGG 1 cut(s) 185
XspI CTAG 3 cut(s) 225, 411, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.