Rmu_sc0000946.1_g000034
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0016883
Physical Location & Seq
Forward (+)
154349 .. 157081
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
atggattcaacatctaatactctagagctgaccttgagtcttaagccctcctttgatcccaaacccctaaaccacttactgactaacctagctcaaattgatagtgcttccgcaaaattgtcggagctagaaatttacctgaaccagcatgaagaagagttgcgtagggttcaggcttttgatagagatctgcctcattgcatgcttctcttgaagggtggtaagctagctagcccattaaagttcagaatttacaaaaaggcgggactcccggtttcgcaagccggagctggcagtagtagtgcagagtctgcagacaatcttcatcagccagcaatggcattacaaaaacagtggactctccaatcccaggttccgtatacatatgacttttttggcacagccagtacttcaagtggtcagtactcgaactggcggcagcatcagggagatgaccagggagcgcaaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

157

Amino Acids

17.38

Weight (kDa)

6.18

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 12 - 72 3.4e-16 HHO5-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016883)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g18211 FvH4_6g46323
malus_domestica MD17G1066200.v1.1
prunus_persica Prupe.3G248500_v2.0.a1
pyrus_communis pycom17g06640
rosa_laevigata RLG00000021490
rosa_multiflora Rmu_sc0000946.1_g000034
rosa_roxburghii Rroxscaffold_2G00086290
rosa_rugosa Rorug02G0510500
rosa_samantha Rh2AG578600 Rh2BG589900 Rh2CG560500 Rh2DG600100
rosa_wichuraiana Rw2G048040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 380
AciI CCGC 3 cut(s) 111, 263, 436
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 2 cut(s) 132, 249
AfaI GTAC 2 cut(s) 409, 425
AfiI CCNNNNNNNGG 1 cut(s) 370
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 9, 214, 414
AhdI GACNNNNNGTC 1 cut(s) 36
AjnI CCWGG 2 cut(s) 369, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AluBI AGCT 6 cut(s) 28, 92, 127, 226, 230, 290
AluI AGCT 6 cut(s) 28, 92, 127, 226, 230, 290
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 2 cut(s) 132, 249
AspLEI GCGC 1 cut(s) 466
AsuC2I CCSGG 1 cut(s) 272
AsuNHI GCTAGC 2 cut(s) 226, 230
BbvI GCAGC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 2 cut(s) 371, 458
BcnI CCSGG 1 cut(s) 272
BfaI CTAG 6 cut(s) 23, 89, 128, 227, 231, 472
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 187
BisI GCNGC 2 cut(s) 437, 440
BlsI GCNGC 2 cut(s) 438, 441
BmcAI AGTACT 2 cut(s) 409, 425
Bme1390I CCNGG 3 cut(s) 272, 371, 458
BmeRI GACNNNNNGTC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 3 cut(s) 272, 371, 458
BmsI GCATC 1 cut(s) 451
BmtI GCTAGC 2 cut(s) 230, 234
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 369, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 405, 437
Bse3DI GCAATG 2 cut(s) 196, 342
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 2 cut(s) 371, 458
BseDI CCNNGG 2 cut(s) 369, 457
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 2 cut(s) 196, 342
BseNI ACTGG 2 cut(s) 405, 437
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 324
BsiSI CCGG 2 cut(s) 272, 285
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 55, 187
BspACI CCGC 3 cut(s) 111, 263, 436
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 316
BspOI GCTAGC 2 cut(s) 230, 234
BspPI GGATC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 196, 342
BsrI ACTGG 2 cut(s) 405, 437
BssECI CCNNGG 2 cut(s) 369, 457
BssMI GATC 2 cut(s) 55, 187
BssNAI GTATAC 1 cut(s) 381
Bst1107I GTATAC 1 cut(s) 381
Bst2UI CCWGG 2 cut(s) 371, 458
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 6 cut(s) 203, 228, 232, 282, 292, 333
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 2 cut(s) 58, 190
BstMBI GATC 2 cut(s) 55, 187
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 371, 458
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 270, 369, 456
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 359
Cac8I GCNNGC 6 cut(s) 203, 228, 232, 282, 292, 333
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 466
Csp6I GTAC 2 cut(s) 408, 424
CspCI CAANNNNNGTGG 2 cut(s) 335, 370
CviAII CATG 2 cut(s) 149, 202
CviQI GTAC 2 cut(s) 408, 424
DpnI GATC 2 cut(s) 57, 189
DpnII GATC 2 cut(s) 55, 187
DriI GACNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 150
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 150
EcoRII CCWGG 2 cut(s) 369, 456
FaeI CATG 2 cut(s) 152, 205
FaiI YATR 5 cut(s) 150, 203, 381, 385, 387
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 148, 201
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 385
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 437, 440
Fsp4HI GCNGC 2 cut(s) 437, 440
FspBI CTAG 6 cut(s) 23, 89, 128, 227, 231, 472
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 437, 440
HapII CCGG 2 cut(s) 272, 285
HhaI GCGC 1 cut(s) 466
Hin1II CATG 2 cut(s) 152, 205
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 5 cut(s) 5, 37, 267, 308, 358
HpaII CCGG 2 cut(s) 272, 285
Hpy166II GTNNAC 2 cut(s) 357, 381
Hpy188I TCNGA 2 cut(s) 124, 248
Hpy188III TCNNGA 2 cut(s) 23, 211
Hpy8I GTNNAC 2 cut(s) 357, 381
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 3 cut(s) 201, 305, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
Hsp92II CATG 2 cut(s) 152, 205
HspAI GCGC 1 cut(s) 464
Kzo9I GATC 2 cut(s) 55, 187
LmnI GCTCC 3 cut(s) 124, 287, 461
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 451
MaeI CTAG 6 cut(s) 23, 89, 128, 227, 231, 472
MalI GATC 2 cut(s) 57, 189
MboI GATC 2 cut(s) 55, 187
MboII GAAGA 3 cut(s) 164, 167, 314
MflI RGATCY 1 cut(s) 187
MluCI AATT 4 cut(s) 96, 116, 132, 249
MlyI GAGTC 4 cut(s) 46, 261, 317, 352
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 2 cut(s) 58, 204
MseI TTAA 2 cut(s) 42, 239
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 2 cut(s) 272, 285
MspR9I CCNGG 3 cut(s) 272, 371, 458
MvaI CCWGG 2 cut(s) 371, 458
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 385
NdeII GATC 2 cut(s) 55, 187
NheI GCTAGC 2 cut(s) 226, 230
NlaIII CATG 2 cut(s) 152, 205
NlaIV GGNNCC 1 cut(s) 375
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 438, 441
PleI GAGTC 4 cut(s) 45, 261, 316, 352
PpsI GAGTC 4 cut(s) 45, 261, 316, 352
Psp6I CCWGG 2 cut(s) 369, 456
PspGI CCWGG 2 cut(s) 369, 456
PspN4I GGNNCC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 409, 425
RsaNI GTAC 2 cut(s) 408, 424
SaqAI TTAA 2 cut(s) 42, 239
SatI GCNGC 2 cut(s) 437, 440
Sau3AI GATC 2 cut(s) 55, 187
ScaI AGTACT 2 cut(s) 409, 425
SchI GAGTC 4 cut(s) 46, 261, 317, 352
ScrFI CCNGG 3 cut(s) 272, 371, 458
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 312
SmlI CTYRAG 2 cut(s) 34, 41
SmoI CTYRAG 2 cut(s) 34, 41
SphI GCATGC 1 cut(s) 205
Sse9I AATT 4 cut(s) 96, 116, 132, 249
SsiI CCGC 3 cut(s) 111, 263, 436
SspMI CTAG 6 cut(s) 23, 89, 128, 227, 231, 472
StyD4I CCNGG 3 cut(s) 270, 369, 456
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 428
TasI AATT 4 cut(s) 96, 116, 132, 249
TatI WGTACW 2 cut(s) 407, 423
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 42, 239
Tru9I TTAA 2 cut(s) 42, 239
TscAI CASTG 1 cut(s) 359
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 165, 314
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 1 cut(s) 359
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 2 cut(s) 132, 249
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 6 cut(s) 23, 89, 128, 227, 231, 472
ZrmI AGTACT 2 cut(s) 409, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.